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Summary Geometry Related PDB entries

0J5

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N5	C1	sing	1.37Å	1.35Å
N1	C1	sing	1.36Å	1.38Å
N1	C4	sing	1.35Å	1.37Å
C1	N2	doub	1.31Å	1.37Å
O1	C4	doub	1.22Å	1.24Å
C4	C3	sing	1.46Å	1.51Å
N2	C2	sing	1.33Å	1.37Å
C3	C2	doub	1.41Å	1.51Å
C3	C6	sing	1.42Å	1.51Å
C2	N3	sing	1.37Å	1.35Å
O2	C6	doub	1.22Å	1.25Å
C6	C5	sing	1.42Å	1.51Å
N3	N4	sing	1.40Å	1.43Å
C5	N4	doub	1.30Å	1.37Å
C5	C7	sing	1.51Å	1.53Å
C7	C8	sing	1.51Å	1.53Å
O3	C8	doub	1.21Å	1.26Å
C8	O4	sing	1.34Å	1.26Å
O4	H1	sing	0.97Å	0.95Å
C7	H2	sing	1.09Å	1.10Å
C7	H3	sing	1.09Å	1.10Å
N5	H5	sing	0.97Å	1.00Å
N5	H6	sing	0.97Å	1.00Å
N1	H7	sing	0.97Å	1.00Å
N3	H4	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N5	C1	N1	119.4°	118.5°
N5	C1	N2	118.5°	118.5°
C1	N5	H5	120.0°	120.0°
C1	N5	H6	120.0°	120.1°
C1	N1	C4	122.4°	120.2°
N1	C1	N2	122.0°	122.9°
C1	N1	H7	118.8°	119.9°
N1	C4	O1	119.8°	121.3°
N1	C4	C3	118.6°	117.4°
C4	N1	H7	118.8°	119.9°
C1	N2	C2	122.1°	121.7°
O1	C4	C3	121.6°	121.3°
C4	C3	C2	115.9°	118.5°
C4	C3	C6	125.8°	122.1°
N2	C2	C3	119.0°	119.2°
N2	C2	N3	121.5°	121.7°
C2	C3	C6	118.3°	119.3°
C3	C2	N3	119.5°	119.1°
C3	C6	O2	121.8°	120.8°
C3	C6	C5	117.1°	118.5°
C2	N3	N4	122.3°	120.5°
C2	N3	H4	118.9°	119.7°
O2	C6	C5	121.1°	120.7°
C6	C5	N4	118.6°	120.5°
C6	C5	C7	122.1°	119.7°
N3	N4	C5	124.1°	122.0°
N4	N3	H4	118.8°	119.7°
N4	C5	C7	119.3°	119.8°
C5	C7	C8	112.7°	109.5°
C5	C7	H2	108.7°	109.5°
C5	C7	H3	108.6°	109.5°
C7	C8	O3	119.0°	120.0°
C7	C8	O4	118.4°	120.0°
C8	C7	H2	108.6°	109.4°
C8	C7	H3	108.6°	109.4°
O3	C8	O4	122.6°	120.0°
C8	O4	H1	109.5°	117.0°
H2	C7	H3	109.5°	109.5°
H5	N5	H6	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N5	C1	N1	N2	179.9°	180.0°
N5	C1	N1	C4	179.9°	179.9°
N5	C1	N2	C2	180.0°	180.0°
C1	N5	H5	H6	180.0°	179.9°
N5	C1	N1	H7	0.1°	0.1°
C1	N1	C4	H7	180.0°	179.9°
C1	N1	C4	O1	180.0°	180.0°
C1	N1	C4	C3	0.1°	0.1°
N1	C1	N2	C2	0.1°	0.0°
N1	C1	N5	H5	179.9°	179.9°
N1	C1	N5	H6	0.1°	0.0°
C4	N1	C1	N2	0.0°	0.1°
N1	C4	O1	C3	179.9°	180.0°
N1	C4	C3	C2	0.3°	0.0°
N1	C4	C3	C6	179.9°	180.0°
C1	N2	C2	C3	0.3°	0.0°
C1	N2	C2	N3	179.9°	179.7°
N2	C1	N5	H5	0.0°	0.1°
N2	C1	N5	H6	180.0°	180.0°
N2	C1	N1	H7	180.0°	180.0°
O1	C4	C3	C2	179.8°	180.0°
O1	C4	C3	C6	0.1°	0.0°
O1	C4	N1	H7	0.0°	0.1°
C4	C3	C2	N2	0.4°	0.1°
C4	C3	C2	C6	179.8°	180.0°
C4	C3	C2	N3	179.9°	179.8°
C4	C3	C6	O2	0.3°	0.0°
C4	C3	C6	C5	179.8°	180.0°
C3	C4	N1	H7	179.9°	179.9°
N2	C2	C3	N3	179.8°	179.7°
N2	C2	C3	C6	179.8°	180.0°
N2	C2	N3	N4	179.9°	179.8°
N2	C2	N3	H4	0.1°	0.3°
C2	C3	C6	O2	179.9°	180.0°
C2	C3	C6	C5	0.1°	0.0°
C3	C2	N3	N4	0.1°	0.5°
C3	C2	N3	H4	179.8°	180.0°
C6	C3	C2	N3	0.1°	0.3°
C3	C6	O2	C5	179.8°	180.0°
C3	C6	C5	N4	0.2°	0.1°
C3	C6	C5	C7	180.0°	179.7°
C2	N3	N4	H4	180.0°	179.5°
C2	N3	N4	C5	0.2°	0.5°
O2	C6	C5	N4	180.0°	179.9°
O2	C6	C5	C7	0.2°	0.3°
C6	C5	N4	N3	0.2°	0.3°
C6	C5	N4	C7	179.8°	179.7°
C6	C5	C7	C8	61.9°	179.7°
C6	C5	C7	H2	177.6°	60.3°
C6	C5	C7	H3	58.6°	59.8°
N3	N4	C5	C7	179.9°	180.0°
N4	C5	C7	C8	118.3°	0.0°
N4	C5	C7	H2	2.2°	120.0°
N4	C5	C7	H3	121.2°	119.9°
C5	N4	N3	H4	179.7°	179.9°
C5	C7	C8	H2	120.5°	120.0°
C5	C7	C8	H3	120.5°	120.0°
C5	C7	C8	O3	116.4°	0.0°
C5	C7	C8	O4	62.8°	180.0°
C5	C7	H2	H3	118.5°	120.1°
C7	C8	O3	O4	179.1°	179.9°
C7	C8	O4	H1	179.1°	180.0°
C8	C7	H2	H3	118.5°	119.9°
O3	C8	O4	H1	0.0°	0.1°
O3	C8	C7	H2	123.1°	120.0°
O3	C8	C7	H3	4.1°	120.1°
O4	C8	C7	H2	57.7°	59.9°
O4	C8	C7	H3	176.7°	60.0°

222415

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