0G8

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C2'	S3'	sing	1.84Å	1.83Å
C2'	C1'	sing	1.56Å	1.53Å
S3'	C4'	sing	1.83Å	1.83Å
O2	C2	doub	1.22Å	1.23Å
C2	N3	sing	1.33Å	1.35Å
C2	N1	sing	1.35Å	1.39Å
C1'	N1	sing	1.47Å	1.48Å
C1'	O4'	sing	1.43Å	1.44Å
N3	C4	doub	1.33Å	1.35Å
N1	C6	sing	1.36Å	1.41Å
C4'	O4'	sing	1.44Å	1.44Å
C4'	C5'	sing	1.53Å	1.53Å
C4	N4	sing	1.38Å	1.33Å
C4	C5	sing	1.41Å	1.39Å
C6	C5	doub	1.35Å	1.39Å
C5'	O5'	sing	1.43Å	1.43Å
O5'	PA	sing	1.61Å	1.61Å
O2A	PA	doub	1.48Å	1.48Å
O2B	PB	doub	1.48Å	1.48Å
O3A	PA	sing	1.61Å	1.61Å
O3A	PB	sing	1.61Å	1.61Å
PA	O1A	sing	1.61Å	1.48Å
O3B	PB	sing	1.61Å	1.61Å
PB	O1B	sing	1.61Å	1.61Å
N4	H1	sing	0.97Å	1.00Å
N4	H2	sing	0.97Å	1.00Å
C5	H3	sing	1.08Å	1.08Å
C6	H4	sing	1.08Å	1.08Å
C1'	H5	sing	1.09Å	1.10Å
C2'	H6	sing	1.09Å	1.10Å
C2'	H7	sing	1.09Å	1.10Å
C4'	H8	sing	1.09Å	1.10Å
C5'	H9	sing	1.09Å	1.10Å
C5'	H10	sing	1.09Å	1.10Å
O1A	H11	sing	0.97Å	0.95Å
O1B	H12	sing	0.97Å	0.95Å
O3B	H13	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
S3'	C2'	C1'	100.6°	100.2°
C2'	S3'	C4'	94.6°	95.6°
S3'	C2'	H6	111.6°	111.3°
S3'	C2'	H7	111.7°	111.2°
C2'	C1'	N1	109.5°	109.8°
C2'	C1'	O4'	107.5°	107.6°
C2'	C1'	H5	109.8°	109.9°
C1'	C2'	H6	111.7°	111.3°
C1'	C2'	H7	111.6°	111.2°
S3'	C4'	O4'	103.3°	104.4°
S3'	C4'	C5'	112.5°	110.5°
S3'	C4'	H8	107.9°	110.4°
O2	C2	N3	120.3°	119.5°
O2	C2	N1	119.7°	119.4°
N3	C2	N1	120.0°	121.1°
C2	N3	C4	121.2°	120.7°
C2	N1	C1'	120.5°	119.9°
C2	N1	C6	119.9°	120.4°
N1	C1'	O4'	108.5°	109.9°
C1'	N1	C6	119.6°	119.8°
N1	C1'	H5	110.5°	109.8°
C1'	O4'	C4'	106.5°	112.3°
O4'	C1'	H5	111.1°	109.9°
N3	C4	N4	119.4°	120.2°
N3	C4	C5	120.7°	119.6°
N1	C6	C5	118.3°	119.2°
N1	C6	H4	120.9°	120.4°
O4'	C4'	C5'	108.3°	110.5°
O4'	C4'	H8	113.1°	110.5°
C4'	C5'	O5'	109.7°	109.5°
C5'	C4'	H8	111.6°	110.4°
C4'	C5'	H9	109.4°	109.5°
C4'	C5'	H10	109.4°	109.5°
N4	C4	C5	119.9°	120.2°
C4	N4	H1	120.0°	120.0°
C4	N4	H2	120.0°	119.9°
C4	C5	C6	119.8°	119.0°
C4	C5	H3	120.1°	120.5°
C6	C5	H3	120.1°	120.5°
C5	C6	H4	120.8°	120.4°
C5'	O5'	PA	119.4°	123.0°
O5'	C5'	H9	109.4°	109.4°
O5'	C5'	H10	109.4°	109.4°
O5'	PA	O2A	108.9°	109.5°
O5'	PA	O3A	102.7°	109.5°
O5'	PA	O1A	108.2°	109.4°
O2A	PA	O3A	110.8°	109.5°
O2A	PA	O1A	117.5°	109.5°
O2B	PB	O3A	114.0°	109.5°
O2B	PB	O3B	111.8°	109.5°
O2B	PB	O1B	111.3°	109.5°
PA	O3A	PB	122.9°	134.0°
O3A	PA	O1A	107.7°	109.5°
O3A	PB	O3B	105.1°	109.5°
O3A	PB	O1B	107.6°	109.5°
PA	O1A	H11	109.5°	114.0°
O3B	PB	O1B	106.6°	109.5°
PB	O3B	H13	109.5°	114.0°
PB	O1B	H12	109.5°	114.0°
H1	N4	H2	120.0°	120.1°
H6	C2'	H7	109.5°	111.2°
H9	C5'	H10	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
S3'	C2'	C1'	H6	118.5°	117.8°
S3'	C2'	C1'	H7	118.6°	117.7°
S3'	C2'	C1'	N1	157.5°	160.4°
S3'	C2'	C1'	O4'	39.9°	40.9°
C2'	S3'	C4'	O4'	17.8°	3.5°
C2'	S3'	C4'	C5'	134.3°	122.3°
S3'	C2'	C1'	H5	81.1°	78.7°
S3'	C2'	H6	H7	124.2°	124.6°
C2'	S3'	C4'	H8	102.2°	115.3°
C1'	C2'	S3'	C4'	11.8°	20.6°
C2'	C1'	N1	C2	102.5°	60.5°
C2'	C1'	N1	O4'	117.0°	118.1°
C2'	C1'	N1	H5	121.0°	121.0°
C2'	C1'	O4'	H5	120.1°	119.6°
C2'	C1'	N1	C6	76.8°	119.8°
C2'	C1'	O4'	C4'	58.1°	49.4°
C1'	C2'	H6	H7	124.1°	124.6°
S3'	C4'	O4'	C1'	44.8°	30.5°
S3'	C4'	O4'	C5'	119.4°	118.8°
S3'	C4'	O4'	H8	116.3°	118.7°
S3'	C4'	C5'	H8	121.4°	122.5°
S3'	C4'	C5'	O5'	163.0°	58.6°
C4'	S3'	C2'	H6	130.3°	97.2°
C4'	S3'	C2'	H7	106.7°	138.3°
S3'	C4'	C5'	H9	43.0°	61.4°
S3'	C4'	C5'	H10	77.0°	178.5°
O2	C2	N3	N1	179.4°	179.6°
O2	C2	N1	C1'	1.4°	0.1°
O2	C2	N3	C4	179.2°	179.9°
O2	C2	N1	C6	179.2°	179.8°
N3	C2	N1	C1'	179.3°	179.7°
N3	C2	N1	C6	0.1°	0.6°
C2	N3	C4	N4	179.7°	180.0°
C2	N3	C4	C5	0.1°	0.0°
C2	N1	C1'	C6	179.4°	179.7°
C2	N1	C1'	O4'	140.5°	178.6°
N1	C2	N3	C4	0.1°	0.3°
C2	N1	C6	C5	0.1°	0.5°
C2	N1	C6	H4	179.9°	179.7°
C2	N1	C1'	H5	18.5°	60.5°
N1	C1'	O4'	H5	121.6°	120.9°
N1	C1'	O4'	C4'	176.4°	168.8°
C1'	N1	C6	C5	179.3°	179.8°
C1'	N1	C6	H4	0.7°	0.0°
N1	C1'	C2'	H6	84.0°	42.6°
N1	C1'	C2'	H7	38.9°	82.0°
O4'	C1'	N1	C6	40.1°	1.8°
C1'	O4'	C4'	C5'	164.2°	149.3°
O4'	C1'	C2'	H6	158.4°	76.9°
O4'	C1'	C2'	H7	78.7°	158.5°
C1'	O4'	C4'	H8	71.5°	88.2°
N3	C4	N4	C5	179.8°	180.0°
N3	C4	C5	C6	0.1°	0.0°
N3	C4	N4	H1	0.0°	0.0°
N3	C4	N4	H2	180.0°	180.0°
N3	C4	C5	H3	179.9°	180.0°
N1	C6	C5	C4	0.1°	0.2°
N1	C6	C5	H4	180.0°	179.7°
N1	C6	C5	H3	179.9°	179.8°
C6	N1	C1'	H5	162.1°	119.2°
O4'	C4'	C5'	H8	125.1°	122.5°
O4'	C4'	C5'	O5'	49.5°	56.4°
C4'	O4'	C1'	H5	62.0°	70.3°
O4'	C4'	C5'	H9	70.5°	176.4°
O4'	C4'	C5'	H10	169.6°	63.5°
C4'	C5'	O5'	H9	120.0°	120.0°
C4'	C5'	O5'	H10	120.0°	120.0°
C4'	C5'	O5'	PA	160.9°	180.0°
C4'	C5'	H9	H10	119.9°	120.1°
N4	C4	C5	C6	179.7°	180.0°
C4	N4	H1	H2	180.0°	180.0°
N4	C4	C5	H3	0.3°	0.0°
C4	C5	C6	H3	180.0°	180.0°
C5	C4	N4	H1	179.7°	180.0°
C5	C4	N4	H2	0.2°	0.0°
C4	C5	C6	H4	180.0°	180.0°
C5'	O5'	PA	O2A	36.4°	55.0°
C5'	O5'	PA	O3A	81.1°	175.0°
C5'	O5'	PA	O1A	165.2°	65.0°
O5'	C5'	C4'	H8	75.6°	179.0°
O5'	C5'	H9	H10	119.9°	119.9°
O5'	PA	O2A	O3A	112.2°	120.0°
O5'	PA	O2A	O1A	123.4°	120.0°
O5'	PA	O3A	O1A	114.1°	120.0°
O5'	PA	O3A	PB	152.0°	165.0°
PA	O5'	C5'	H9	40.9°	60.0°
PA	O5'	C5'	H10	79.1°	60.0°
O5'	PA	O1A	H11	123.7°	60.0°
O2A	PA	O3A	O1A	129.8°	120.0°
O2A	PA	O3A	PB	35.9°	45.0°
O2A	PA	O1A	H11	0.0°	180.0°
O2B	PB	O3A	PA	59.8°	40.0°
O2B	PB	O3A	O3B	122.8°	120.0°
O2B	PB	O3A	O1B	123.9°	120.0°
O2B	PB	O3B	O1B	121.9°	120.0°
O2B	PB	O1B	H12	0.0°	180.0°
O2B	PB	O3B	H13	0.0°	59.9°
PA	O3A	PB	O3B	177.4°	160.0°
PA	O3A	PB	O1B	64.2°	80.0°
O3A	PA	O1A	H11	125.9°	59.9°
PB	O3A	PA	O1A	93.9°	75.0°
O3A	PB	O3B	O1B	114.0°	120.0°
O3A	PB	O1B	H12	125.5°	60.0°
O3A	PB	O3B	H13	124.1°	180.0°
O3B	PB	O1B	H12	122.2°	60.0°
O1B	PB	O3B	H13	121.9°	60.0°
H3	C5	C6	H4	0.1°	0.0°
H5	C1'	C2'	H6	37.4°	163.5°
H5	C1'	C2'	H7	160.3°	38.9°
H8	C4'	C5'	H9	164.4°	61.1°
H8	C4'	C5'	H10	44.4°	59.0°

Release date:	2014-08-27
Definition date:	2012-01-06
Last modified:	2014-08-22
Release status:	REL
Processing site:	RCSB
Derived from:	3VCW