0G0
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O2 | C2 | doub | 1.22Å | 1.25Å | |
C2 | N3 | sing | 1.35Å | 1.34Å | |
C2 | N1 | sing | 1.35Å | 1.36Å | |
N3 | C4 | sing | 1.35Å | 1.37Å | |
N5 | N6 | doub | 1.29Å | 1.32Å | Aromatic |
N5 | C8 | sing | 1.34Å | 1.39Å | Aromatic |
N6 | N7 | sing | 1.29Å | 1.33Å | Aromatic |
N1 | C7 | sing | 1.47Å | 1.40Å | |
N1 | C6 | sing | 1.37Å | 1.37Å | |
C7 | C8 | sing | 1.51Å | 1.47Å | |
C4 | O4 | doub | 1.22Å | 1.39Å | |
C4 | C5 | sing | 1.42Å | 1.39Å | |
C8 | C9 | doub | 1.35Å | 1.47Å | Aromatic |
O5' | C5' | sing | 1.43Å | 1.42Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C6 | C5 | doub | 1.35Å | 1.38Å | |
C5 | F5A | sing | 1.35Å | 1.31Å | |
C4' | O4' | sing | 1.44Å | 1.45Å | |
C4' | C3' | sing | 1.54Å | 1.53Å | |
N7 | C9 | sing | 1.35Å | 1.39Å | Aromatic |
N7 | C1' | sing | 1.46Å | 1.46Å | |
O3' | C3' | sing | 1.43Å | 1.42Å | |
O4' | C1' | sing | 1.44Å | 1.39Å | |
C3' | C2' | sing | 1.55Å | 1.54Å | |
C1' | C2' | sing | 1.54Å | 1.53Å | |
C2' | O2' | sing | 1.43Å | 1.42Å | |
C6 | H1 | sing | 1.08Å | 1.08Å | |
C7 | H2 | sing | 1.09Å | 1.10Å | |
C7 | H3 | sing | 1.09Å | 1.10Å | |
C9 | H4 | sing | 1.08Å | 1.08Å | |
N3 | H5 | sing | 0.97Å | 1.00Å | |
C1' | H6 | sing | 1.09Å | 1.10Å | |
C4' | H7 | sing | 1.09Å | 1.10Å | |
C5' | H8 | sing | 1.09Å | 1.10Å | |
C5' | H9 | sing | 1.09Å | 1.10Å | |
O5' | H10 | sing | 0.97Å | 0.95Å | |
C3' | H11 | sing | 1.09Å | 1.10Å | |
O3' | H12 | sing | 0.97Å | 0.95Å | |
C2' | H13 | sing | 1.09Å | 1.10Å | |
O2' | H14 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O2 | C2 | N3 | 119.7° | 119.5° |
O2 | C2 | N1 | 121.8° | 119.5° |
N3 | C2 | N1 | 118.5° | 120.9° |
C2 | N3 | C4 | 122.2° | 120.3° |
C2 | N3 | H5 | 118.9° | 119.9° |
C2 | N1 | C7 | 124.0° | 119.7° |
C2 | N1 | C6 | 121.4° | 120.7° |
N3 | C4 | O4 | 121.2° | 120.3° |
N3 | C4 | C5 | 119.7° | 119.4° |
C4 | N3 | H5 | 118.9° | 119.8° |
N6 | N5 | C8 | 108.6° | 108.9° |
N5 | N6 | N7 | 111.6° | 110.1° |
N5 | C8 | C7 | 127.4° | 126.8° |
N5 | C8 | C9 | 105.9° | 106.5° |
N6 | N7 | C9 | 109.4° | 108.3° |
N6 | N7 | C1' | 128.1° | 125.9° |
C7 | N1 | C6 | 114.3° | 119.6° |
N1 | C7 | C8 | 129.3° | 109.5° |
N1 | C7 | H2 | 104.3° | 109.4° |
N1 | C7 | H3 | 104.3° | 109.4° |
N1 | C6 | C5 | 120.1° | 119.6° |
N1 | C6 | H1 | 119.9° | 120.2° |
C7 | C8 | C9 | 126.4° | 126.7° |
C8 | C7 | H2 | 104.3° | 109.5° |
C8 | C7 | H3 | 104.3° | 109.5° |
O4 | C4 | C5 | 119.1° | 120.3° |
C4 | C5 | C6 | 118.1° | 119.1° |
C4 | C5 | F5A | 120.7° | 120.4° |
C8 | C9 | N7 | 104.4° | 106.1° |
C8 | C9 | H4 | 127.8° | 127.0° |
O5' | C5' | C4' | 111.3° | 109.4° |
O5' | C5' | H8 | 109.0° | 109.5° |
O5' | C5' | H9 | 109.0° | 109.5° |
C5' | O5' | H10 | 109.5° | 114.0° |
C5' | C4' | O4' | 110.1° | 110.4° |
C5' | C4' | C3' | 116.0° | 110.4° |
C5' | C4' | H7 | 108.3° | 110.4° |
C4' | C5' | H8 | 109.0° | 109.5° |
C4' | C5' | H9 | 109.0° | 109.4° |
C6 | C5 | F5A | 121.2° | 120.4° |
C5 | C6 | H1 | 119.9° | 120.2° |
O4' | C4' | C3' | 105.3° | 104.8° |
C4' | O4' | C1' | 108.6° | 105.3° |
O4' | C4' | H7 | 109.1° | 110.4° |
C4' | C3' | O3' | 112.8° | 110.5° |
C4' | C3' | C2' | 105.4° | 104.0° |
C3' | C4' | H7 | 108.0° | 110.4° |
C4' | C3' | H11 | 107.8° | 110.5° |
C9 | N7 | C1' | 122.4° | 125.9° |
N7 | C9 | H4 | 127.8° | 126.9° |
N7 | C1' | O4' | 108.8° | 110.4° |
N7 | C1' | C2' | 111.0° | 110.3° |
N7 | C1' | H6 | 110.2° | 110.4° |
O3' | C3' | C2' | 113.7° | 110.5° |
O3' | C3' | H11 | 109.3° | 110.6° |
C3' | O3' | H12 | 109.5° | 114.0° |
O4' | C1' | C2' | 106.5° | 104.8° |
O4' | C1' | H6 | 111.1° | 110.5° |
C3' | C2' | C1' | 103.0° | 104.1° |
C3' | C2' | O2' | 111.0° | 110.5° |
C2' | C3' | H11 | 107.6° | 110.5° |
C3' | C2' | H13 | 110.6° | 110.5° |
C1' | C2' | O2' | 108.6° | 110.5° |
C2' | C1' | H6 | 109.2° | 110.3° |
C1' | C2' | H13 | 110.8° | 110.5° |
O2' | C2' | H13 | 112.5° | 110.5° |
C2' | O2' | H14 | 109.5° | 114.0° |
H2 | C7 | H3 | 109.4° | 109.5° |
H8 | C5' | H9 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O2 | C2 | N3 | N1 | 177.8° | 179.5° |
O2 | C2 | N3 | C4 | 179.3° | 180.0° |
O2 | C2 | N1 | C7 | 6.7° | 0.2° |
O2 | C2 | N1 | C6 | 179.2° | 179.7° |
O2 | C2 | N3 | H5 | 0.7° | 0.2° |
C2 | N3 | C4 | H5 | 180.0° | 179.8° |
N3 | C2 | N1 | C7 | 175.6° | 179.7° |
N3 | C2 | N1 | C6 | 3.0° | 0.2° |
C2 | N3 | C4 | O4 | 179.9° | 179.8° |
C2 | N3 | C4 | C5 | 0.2° | 0.5° |
N1 | C2 | N3 | C4 | 1.5° | 0.5° |
C2 | N1 | C7 | C6 | 173.0° | 179.9° |
C2 | N1 | C7 | C8 | 63.3° | 90.0° |
C2 | N1 | C6 | C5 | 3.2° | 0.0° |
C2 | N1 | C6 | H1 | 176.8° | 180.0° |
C2 | N1 | C7 | H2 | 174.1° | 150.0° |
C2 | N1 | C7 | H3 | 59.3° | 30.1° |
N1 | C2 | N3 | H5 | 178.5° | 179.7° |
N3 | C4 | O4 | C5 | 179.8° | 179.7° |
N3 | C4 | C5 | C6 | 0.4° | 0.2° |
N3 | C4 | C5 | F5A | 179.9° | 179.8° |
N6 | N5 | C8 | C7 | 176.5° | 180.0° |
N6 | N5 | C8 | C9 | 2.8° | 0.2° |
N5 | N6 | N7 | C9 | 1.3° | 0.0° |
N5 | N6 | N7 | C1' | 177.8° | 179.9° |
C8 | N5 | N6 | N7 | 1.0° | 0.1° |
N5 | C8 | C7 | N1 | 91.0° | 85.3° |
N5 | C8 | C7 | C9 | 172.5° | 179.7° |
N5 | C8 | C9 | N7 | 3.4° | 0.2° |
N5 | C8 | C7 | H2 | 146.4° | 34.7° |
N5 | C8 | C7 | H3 | 31.6° | 154.7° |
N5 | C8 | C9 | H4 | 176.6° | 179.8° |
N6 | N7 | C9 | C8 | 2.9° | 0.1° |
N6 | N7 | C9 | C1' | 176.7° | 180.0° |
N6 | N7 | C1' | O4' | 4.0° | 60.3° |
N6 | N7 | C1' | C2' | 120.9° | 55.1° |
N6 | N7 | C9 | H4 | 177.1° | 179.9° |
N6 | N7 | C1' | H6 | 118.0° | 177.3° |
N1 | C7 | C8 | H2 | 122.6° | 120.0° |
N1 | C7 | C8 | H3 | 122.6° | 120.0° |
N1 | C7 | C8 | C9 | 96.5° | 95.0° |
C7 | N1 | C6 | C5 | 176.5° | 180.0° |
C7 | N1 | C6 | H1 | 3.5° | 0.1° |
N1 | C7 | H2 | H3 | 111.1° | 119.9° |
C6 | N1 | C7 | C8 | 123.6° | 90.0° |
N1 | C6 | C5 | C4 | 1.9° | 0.0° |
N1 | C6 | C5 | H1 | 180.0° | 179.9° |
N1 | C6 | C5 | F5A | 178.4° | 180.0° |
C6 | N1 | C7 | H2 | 1.0° | 30.0° |
C6 | N1 | C7 | H3 | 113.8° | 150.0° |
C7 | C8 | C9 | N7 | 177.2° | 180.0° |
C8 | C7 | H2 | H3 | 111.2° | 120.0° |
C7 | C8 | C9 | H4 | 2.8° | 0.1° |
O4 | C4 | C5 | C6 | 179.8° | 180.0° |
O4 | C4 | C5 | F5A | 0.1° | 0.1° |
O4 | C4 | N3 | H5 | 0.0° | 0.0° |
C4 | C5 | C6 | F5A | 179.7° | 180.0° |
C4 | C5 | C6 | H1 | 178.1° | 180.0° |
C5 | C4 | N3 | H5 | 179.8° | 179.7° |
C8 | C9 | N7 | H4 | 180.0° | 180.0° |
C8 | C9 | N7 | C1' | 179.6° | 179.8° |
C9 | C8 | C7 | H2 | 26.0° | 145.0° |
C9 | C8 | C7 | H3 | 140.9° | 25.0° |
O5' | C5' | C4' | H8 | 120.3° | 120.0° |
O5' | C5' | C4' | H9 | 120.3° | 120.0° |
O5' | C5' | C4' | O4' | 169.7° | 66.5° |
O5' | C5' | C4' | C3' | 50.4° | 178.2° |
O5' | C5' | C4' | H7 | 71.1° | 55.8° |
O5' | C5' | H8 | H9 | 119.1° | 120.0° |
C5' | C4' | O4' | C3' | 125.7° | 118.8° |
C5' | C4' | O4' | H7 | 118.7° | 122.3° |
C5' | C4' | C3' | H7 | 121.7° | 122.4° |
C5' | C4' | C3' | O3' | 103.7° | 98.6° |
C5' | C4' | O4' | C1' | 153.9° | 159.3° |
C5' | C4' | C3' | C2' | 131.7° | 142.8° |
C4' | C5' | H8 | H9 | 119.2° | 120.0° |
C4' | C5' | O5' | H10 | 180.0° | 180.0° |
C5' | C4' | C3' | H11 | 17.0° | 24.1° |
F5A | C5 | C6 | H1 | 1.6° | 0.0° |
O4' | C4' | C3' | H7 | 116.4° | 118.8° |
C4' | O4' | C1' | N7 | 84.2° | 78.3° |
O4' | C4' | C3' | O3' | 134.3° | 142.6° |
O4' | C4' | C3' | C2' | 9.7° | 24.0° |
C4' | O4' | C1' | C2' | 35.5° | 40.5° |
C4' | O4' | C1' | H6 | 154.3° | 159.4° |
O4' | C4' | C5' | H8 | 49.5° | 53.5° |
O4' | C4' | C5' | H9 | 70.0° | 173.6° |
O4' | C4' | C3' | H11 | 105.0° | 94.7° |
C4' | C3' | O3' | C2' | 119.9° | 114.6° |
C4' | C3' | O3' | H11 | 119.8° | 122.7° |
C3' | C4' | O4' | C1' | 28.2° | 40.5° |
C4' | C3' | C2' | H11 | 114.8° | 118.7° |
C4' | C3' | C2' | C1' | 9.9° | 0.0° |
C4' | C3' | C2' | O2' | 106.1° | 118.7° |
C3' | C4' | C5' | H8 | 69.9° | 61.8° |
C3' | C4' | C5' | H9 | 170.7° | 58.2° |
C4' | C3' | O3' | H12 | 180.0° | 180.0° |
C4' | C3' | C2' | H13 | 128.4° | 118.6° |
C9 | N7 | C1' | O4' | 172.0° | 119.7° |
C9 | N7 | C1' | C2' | 55.1° | 125.0° |
C9 | N7 | C1' | H6 | 65.9° | 2.8° |
N7 | C1' | O4' | C2' | 119.7° | 118.8° |
N7 | C1' | O4' | H6 | 121.5° | 122.4° |
N7 | C1' | C2' | C3' | 90.9° | 94.9° |
N7 | C1' | C2' | H6 | 121.7° | 122.2° |
N7 | C1' | C2' | O2' | 151.3° | 146.5° |
C1' | N7 | C9 | H4 | 0.4° | 0.2° |
N7 | C1' | C2' | H13 | 27.3° | 23.8° |
O3' | C3' | C2' | H11 | 121.2° | 122.7° |
O3' | C3' | C2' | C1' | 114.1° | 118.6° |
O3' | C3' | C2' | O2' | 129.9° | 122.7° |
O3' | C3' | C4' | H7 | 18.0° | 23.8° |
O3' | C3' | C2' | H13 | 4.3° | 0.1° |
O4' | C1' | C2' | C3' | 27.3° | 24.0° |
O4' | C1' | C2' | H6 | 120.1° | 119.0° |
O4' | C1' | C2' | O2' | 90.4° | 94.7° |
C1' | O4' | C4' | H7 | 87.4° | 78.3° |
O4' | C1' | C2' | H13 | 145.6° | 142.6° |
C3' | C2' | C1' | O2' | 117.7° | 118.6° |
C3' | C2' | C1' | H13 | 118.3° | 118.7° |
C3' | C2' | O2' | H13 | 124.5° | 122.6° |
C3' | C2' | C1' | H6 | 147.4° | 142.9° |
C2' | C3' | C4' | H7 | 106.6° | 94.8° |
C2' | C3' | O3' | H12 | 60.1° | 65.4° |
C3' | C2' | O2' | H14 | 180.0° | 65.3° |
C1' | C2' | O2' | H13 | 123.0° | 122.7° |
C1' | C2' | C3' | H11 | 124.7° | 118.6° |
C1' | C2' | O2' | H14 | 67.5° | 180.0° |
O2' | C2' | C1' | H6 | 29.7° | 24.3° |
O2' | C2' | C3' | H11 | 8.7° | 0.0° |
H6 | C1' | C2' | H13 | 94.3° | 98.4° |
H7 | C4' | C5' | H8 | 168.6° | 175.8° |
H7 | C4' | C5' | H9 | 49.2° | 64.1° |
H7 | C4' | C3' | H11 | 138.6° | 146.5° |
H8 | C5' | O5' | H10 | 59.7° | 60.0° |
H9 | C5' | O5' | H10 | 59.7° | 60.0° |
H11 | C3' | O3' | H12 | 60.2° | 57.3° |
H11 | C3' | C2' | H13 | 116.8° | 122.7° |
H13 | C2' | O2' | H14 | 55.5° | 57.3° |