0DG
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP3 | P | sing | 1.61Å | 1.61Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
P | OP1 | doub | 1.48Å | 1.49Å | |
P | OP2 | sing | 1.61Å | 1.48Å | |
P | O5' | sing | 1.61Å | 1.59Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.43Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'' | sing | 1.09Å | 1.10Å | |
C4' | O4' | sing | 1.44Å | 1.45Å | |
C4' | C3' | sing | 1.54Å | 1.53Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C2' | sing | 1.55Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | C1' | sing | 1.55Å | 1.52Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C2' | H2'' | sing | 1.09Å | 1.10Å | |
C1' | N9 | sing | 1.47Å | 1.46Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
N9 | C8 | sing | 1.37Å | 1.37Å | Aromatic |
N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
C8 | N7 | doub | 1.30Å | 1.30Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.08Å | |
N7 | C5 | sing | 1.35Å | 1.39Å | Aromatic |
C5 | C6 | sing | 1.42Å | 1.42Å | |
C5 | C4 | doub | 1.40Å | 1.38Å | Aromatic |
C6 | O6 | doub | 1.22Å | 1.24Å | |
C6 | N1 | sing | 1.35Å | 1.39Å | |
N1 | C2 | sing | 1.36Å | 1.37Å | |
N1 | H1 | sing | 0.97Å | 1.00Å | |
C2 | N2 | sing | 1.37Å | 1.34Å | |
C2 | N3 | doub | 1.31Å | 1.32Å | |
N2 | H21 | sing | 0.97Å | 1.00Å | |
N2 | H22 | sing | 0.97Å | 1.00Å | |
N3 | C4 | sing | 1.34Å | 1.35Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
P | OP3 | HOP3 | 109.5° | 114.1° |
OP3 | P | OP1 | 108.3° | 109.5° |
OP3 | P | OP2 | 107.9° | 109.4° |
OP3 | P | O5' | 103.9° | 109.5° |
OP1 | P | OP2 | 119.5° | 109.5° |
OP1 | P | O5' | 108.0° | 109.5° |
OP2 | P | O5' | 108.1° | 109.5° |
P | OP2 | HOP2 | 109.5° | 114.1° |
P | O5' | C5' | 121.0° | 123.0° |
O5' | C5' | C4' | 110.2° | 109.4° |
O5' | C5' | H5' | 109.2° | 109.5° |
O5' | C5' | H5'' | 109.2° | 109.5° |
C4' | C5' | H5' | 109.3° | 109.4° |
C4' | C5' | H5'' | 109.3° | 109.5° |
C5' | C4' | O4' | 108.8° | 110.3° |
C5' | C4' | C3' | 115.1° | 110.3° |
C5' | C4' | H4' | 105.0° | 110.3° |
H5' | C5' | H5'' | 109.7° | 109.5° |
O4' | C4' | C3' | 105.7° | 104.8° |
O4' | C4' | H4' | 114.5° | 110.4° |
C4' | O4' | C1' | 110.0° | 105.3° |
C3' | C4' | H4' | 108.1° | 110.5° |
C4' | C3' | O3' | 109.8° | 110.5° |
C4' | C3' | C2' | 103.0° | 104.0° |
C4' | C3' | H3' | 114.2° | 110.5° |
O4' | C1' | C2' | 106.1° | 104.8° |
O4' | C1' | N9 | 107.9° | 110.4° |
O4' | C1' | H1' | 114.7° | 110.4° |
O3' | C3' | C2' | 111.7° | 110.5° |
O3' | C3' | H3' | 105.9° | 110.5° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C2' | C3' | H3' | 112.4° | 110.7° |
C3' | C2' | C1' | 101.9° | 104.1° |
C3' | C2' | H2' | 112.1° | 110.5° |
C3' | C2' | H2'' | 112.1° | 110.5° |
C1' | C2' | H2' | 112.1° | 110.5° |
C1' | C2' | H2'' | 112.1° | 110.5° |
C2' | C1' | N9 | 114.9° | 110.4° |
C2' | C1' | H1' | 107.7° | 110.4° |
H2' | C2' | H2'' | 106.7° | 110.5° |
N9 | C1' | H1' | 105.9° | 110.5° |
C1' | N9 | C8 | 126.8° | 126.3° |
C1' | N9 | C4 | 126.9° | 126.3° |
C8 | N9 | C4 | 106.3° | 107.5° |
N9 | C8 | N7 | 113.3° | 109.8° |
N9 | C8 | H8 | 123.3° | 125.1° |
N9 | C4 | C5 | 105.4° | 106.1° |
N9 | C4 | N3 | 126.1° | 134.2° |
N7 | C8 | H8 | 123.3° | 125.1° |
C8 | N7 | C5 | 104.3° | 109.4° |
N7 | C5 | C6 | 130.4° | 134.1° |
N7 | C5 | C4 | 110.8° | 107.3° |
C6 | C5 | C4 | 118.8° | 118.6° |
C5 | C6 | O6 | 128.6° | 120.8° |
C5 | C6 | N1 | 111.6° | 118.3° |
C5 | C4 | N3 | 128.6° | 119.7° |
O6 | C6 | N1 | 119.8° | 120.9° |
C6 | N1 | C2 | 125.0° | 120.4° |
C6 | N1 | H1 | 117.5° | 119.8° |
C2 | N1 | H1 | 117.5° | 119.8° |
N1 | C2 | N2 | 116.2° | 119.1° |
N1 | C2 | N3 | 124.0° | 121.9° |
N2 | C2 | N3 | 119.8° | 119.0° |
C2 | N2 | H21 | 120.0° | 120.0° |
C2 | N2 | H22 | 120.0° | 120.0° |
C2 | N3 | C4 | 111.9° | 121.1° |
H21 | N2 | H22 | 120.0° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP3 | P | OP1 | OP2 | 124.0° | 120.0° |
OP3 | P | OP1 | O5' | 111.9° | 120.0° |
OP3 | P | OP2 | O5' | 111.8° | 120.0° |
OP3 | P | OP2 | HOP2 | 124.2° | 60.0° |
OP3 | P | O5' | C5' | 37.1° | 65.1° |
HOP3 | OP3 | P | OP1 | 0.0° | 180.0° |
HOP3 | OP3 | P | OP2 | 130.7° | 60.0° |
HOP3 | OP3 | P | O5' | 114.7° | 60.0° |
OP1 | P | OP2 | O5' | 124.0° | 120.0° |
OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
OP1 | P | O5' | C5' | 151.9° | 55.0° |
OP2 | P | O5' | C5' | 77.4° | 175.0° |
O5' | P | OP2 | HOP2 | 124.0° | 180.0° |
P | O5' | C5' | C4' | 156.5° | 180.0° |
P | O5' | C5' | H5' | 83.4° | 60.1° |
P | O5' | C5' | H5'' | 36.5° | 60.0° |
O5' | C5' | C4' | H5' | 120.0° | 119.9° |
O5' | C5' | C4' | H5'' | 120.0° | 120.0° |
O5' | C5' | H5' | H5'' | 119.7° | 120.0° |
O5' | C5' | C4' | O4' | 84.0° | 66.5° |
O5' | C5' | C4' | C3' | 157.6° | 178.2° |
O5' | C5' | C4' | H4' | 39.0° | 55.8° |
C4' | C5' | H5' | H5'' | 119.7° | 120.0° |
C5' | C4' | O4' | C3' | 124.2° | 118.8° |
C5' | C4' | O4' | H4' | 117.0° | 122.2° |
C5' | C4' | C3' | H4' | 116.9° | 122.3° |
C5' | C4' | O4' | C1' | 120.6° | 159.3° |
C5' | C4' | C3' | O3' | 145.4° | 98.6° |
C5' | C4' | C3' | C2' | 95.5° | 142.8° |
C5' | C4' | C3' | H3' | 26.7° | 24.0° |
H5' | C5' | C4' | O4' | 156.1° | 173.6° |
H5' | C5' | C4' | C3' | 37.6° | 58.2° |
H5' | C5' | C4' | H4' | 81.0° | 64.2° |
H5'' | C5' | C4' | O4' | 36.1° | 53.5° |
H5'' | C5' | C4' | C3' | 82.4° | 61.8° |
H5'' | C5' | C4' | H4' | 159.0° | 175.8° |
O4' | C4' | C3' | H4' | 123.0° | 118.9° |
O4' | C4' | C3' | O3' | 94.5° | 142.6° |
O4' | C4' | C3' | C2' | 24.6° | 24.0° |
O4' | C4' | C3' | H3' | 146.8° | 94.8° |
C4' | O4' | C1' | C2' | 19.3° | 40.5° |
C4' | O4' | C1' | N9 | 142.9° | 159.3° |
C4' | O4' | C1' | H1' | 99.4° | 78.3° |
C3' | C4' | O4' | C1' | 3.5° | 40.6° |
C4' | C3' | O3' | C2' | 113.6° | 114.6° |
C4' | C3' | O3' | H3' | 123.7° | 122.6° |
C4' | C3' | C2' | H3' | 123.3° | 118.7° |
C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
C4' | C3' | C2' | C1' | 35.0° | 0.0° |
C4' | C3' | C2' | H2' | 155.0° | 118.7° |
C4' | C3' | C2' | H2'' | 85.0° | 118.7° |
H4' | C4' | O4' | C1' | 122.3° | 78.4° |
H4' | C4' | C3' | O3' | 28.5° | 23.7° |
H4' | C4' | C3' | C2' | 147.6° | 94.9° |
H4' | C4' | C3' | H3' | 90.2° | 146.3° |
O4' | C1' | C2' | C3' | 34.0° | 24.0° |
O4' | C1' | C2' | N9 | 119.1° | 118.8° |
O4' | C1' | C2' | H1' | 123.3° | 118.8° |
O4' | C1' | C2' | H2' | 154.0° | 142.7° |
O4' | C1' | C2' | H2'' | 86.0° | 94.6° |
O4' | C1' | N9 | H1' | 123.2° | 122.3° |
O4' | C1' | N9 | C8 | 100.0° | 23.5° |
O4' | C1' | N9 | C4 | 79.8° | 156.2° |
O3' | C3' | C2' | H3' | 118.9° | 122.7° |
O3' | C3' | C2' | C1' | 82.8° | 118.6° |
O3' | C3' | C2' | H2' | 37.2° | 0.1° |
O3' | C3' | C2' | H2'' | 157.2° | 122.7° |
C2' | C3' | O3' | HO3' | 66.4° | 65.4° |
C3' | C2' | C1' | H2' | 120.0° | 118.7° |
C3' | C2' | C1' | H2'' | 120.0° | 118.6° |
C3' | C2' | H2' | H2'' | 123.0° | 122.6° |
C3' | C2' | C1' | N9 | 153.1° | 142.8° |
C3' | C2' | C1' | H1' | 89.2° | 94.8° |
H3' | C3' | O3' | HO3' | 56.3° | 57.4° |
H3' | C3' | C2' | C1' | 158.4° | 118.7° |
H3' | C3' | C2' | H2' | 81.6° | 122.6° |
H3' | C3' | C2' | H2'' | 38.3° | 0.1° |
C1' | C2' | H2' | H2'' | 123.1° | 122.7° |
C2' | C1' | N9 | H1' | 118.7° | 122.3° |
C2' | C1' | N9 | C8 | 141.9° | 91.8° |
C2' | C1' | N9 | C4 | 38.3° | 88.4° |
H2' | C2' | C1' | N9 | 86.9° | 98.5° |
H2' | C2' | C1' | H1' | 30.8° | 23.9° |
H2'' | C2' | C1' | N9 | 33.1° | 24.2° |
H2'' | C2' | C1' | H1' | 150.8° | 146.6° |
C1' | N9 | C8 | C4 | 179.8° | 179.8° |
C1' | N9 | C8 | N7 | 179.8° | 180.0° |
C1' | N9 | C8 | H8 | 0.2° | 0.0° |
C1' | N9 | C4 | C5 | 179.8° | 179.9° |
C1' | N9 | C4 | N3 | 0.3° | 0.7° |
H1' | C1' | N9 | C8 | 23.2° | 145.8° |
H1' | C1' | N9 | C4 | 157.0° | 33.9° |
N9 | C8 | N7 | H8 | 180.0° | 180.0° |
N9 | C8 | N7 | C5 | 0.0° | 0.0° |
C8 | N9 | C4 | C5 | 0.1° | 0.4° |
C8 | N9 | C4 | N3 | 179.9° | 179.6° |
C4 | N9 | C8 | N7 | 0.0° | 0.2° |
C4 | N9 | C8 | H8 | 180.0° | 179.8° |
N9 | C4 | C5 | N7 | 0.1° | 0.4° |
N9 | C4 | C5 | C6 | 179.9° | 179.9° |
N9 | C4 | C5 | N3 | 179.9° | 179.3° |
N9 | C4 | N3 | C2 | 179.9° | 179.6° |
C8 | N7 | C5 | C6 | 179.9° | 179.9° |
C8 | N7 | C5 | C4 | 0.0° | 0.3° |
H8 | C8 | N7 | C5 | 180.0° | 180.0° |
N7 | C5 | C6 | C4 | 180.0° | 179.6° |
N7 | C5 | C6 | O6 | 0.2° | 0.1° |
N7 | C5 | C6 | N1 | 179.9° | 179.9° |
N7 | C5 | C4 | N3 | 179.9° | 179.7° |
C5 | C6 | O6 | N1 | 179.9° | 180.0° |
C5 | C6 | N1 | C2 | 0.3° | 0.0° |
C5 | C6 | N1 | H1 | 179.7° | 179.9° |
C6 | C5 | C4 | N3 | 0.1° | 0.5° |
C4 | C5 | C6 | O6 | 179.8° | 179.7° |
C4 | C5 | C6 | N1 | 0.1° | 0.3° |
C5 | C4 | N3 | C2 | 0.2° | 0.5° |
O6 | C6 | N1 | C2 | 179.6° | 180.0° |
O6 | C6 | N1 | H1 | 0.4° | 0.1° |
C6 | N1 | C2 | H1 | 180.0° | 179.9° |
C6 | N1 | C2 | N2 | 179.6° | 180.0° |
C6 | N1 | C2 | N3 | 0.2° | 0.0° |
N1 | C2 | N2 | N3 | 179.8° | 179.9° |
N1 | C2 | N2 | H21 | 179.9° | 0.0° |
N1 | C2 | N2 | H22 | 0.2° | 180.0° |
N1 | C2 | N3 | C4 | 0.0° | 0.2° |
H1 | N1 | C2 | N2 | 0.4° | 0.1° |
H1 | N1 | C2 | N3 | 179.8° | 180.0° |
C2 | N2 | H21 | H22 | 180.0° | 180.0° |
N2 | C2 | N3 | C4 | 179.9° | 179.7° |
N3 | C2 | N2 | H21 | 0.0° | 180.0° |
N3 | C2 | N2 | H22 | 180.0° | 0.0° |