0DC
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.61Å | 1.61Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| P | OP1 | doub | 1.48Å | 1.49Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.59Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.54Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'' | sing | 1.09Å | 1.10Å | |
| C1' | N1 | sing | 1.47Å | 1.47Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.35Å | 1.40Å | |
| N1 | C6 | sing | 1.36Å | 1.37Å | |
| C2 | O2 | doub | 1.22Å | 1.24Å | |
| C2 | N3 | sing | 1.33Å | 1.35Å | |
| N3 | C4 | doub | 1.33Å | 1.34Å | |
| C4 | N4 | sing | 1.38Å | 1.33Å | |
| C4 | C5 | sing | 1.41Å | 1.42Å | |
| N4 | H41 | sing | 0.97Å | 1.00Å | |
| N4 | H42 | sing | 0.97Å | 1.00Å | |
| C5 | C6 | doub | 1.35Å | 1.34Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| OP3 | P | OP1 | 107.7° | 109.5° |
| OP3 | P | OP2 | 108.2° | 109.5° |
| OP3 | P | O5' | 104.1° | 109.5° |
| OP1 | P | OP2 | 119.5° | 109.5° |
| OP1 | P | O5' | 108.1° | 109.5° |
| OP2 | P | O5' | 108.1° | 109.4° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| P | O5' | C5' | 121.2° | 123.0° |
| O5' | C5' | C4' | 110.2° | 109.5° |
| O5' | C5' | H5' | 109.2° | 109.5° |
| O5' | C5' | H5'' | 109.2° | 109.5° |
| C4' | C5' | H5' | 109.2° | 109.4° |
| C4' | C5' | H5'' | 109.2° | 109.4° |
| C5' | C4' | O4' | 108.8° | 110.4° |
| C5' | C4' | C3' | 115.0° | 110.4° |
| C5' | C4' | H4' | 104.9° | 110.3° |
| H5' | C5' | H5'' | 109.8° | 109.5° |
| O4' | C4' | C3' | 105.6° | 104.8° |
| O4' | C4' | H4' | 114.5° | 110.3° |
| C4' | O4' | C1' | 110.4° | 105.3° |
| C3' | C4' | H4' | 108.2° | 110.4° |
| C4' | C3' | O3' | 110.5° | 110.5° |
| C4' | C3' | C2' | 103.1° | 104.0° |
| C4' | C3' | H3' | 113.4° | 110.5° |
| O4' | C1' | C2' | 106.6° | 104.8° |
| O4' | C1' | N1 | 108.0° | 110.4° |
| O4' | C1' | H1' | 114.1° | 110.4° |
| O3' | C3' | C2' | 110.6° | 110.5° |
| O3' | C3' | H3' | 106.2° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C2' | C3' | H3' | 113.2° | 110.6° |
| C3' | C2' | C1' | 102.5° | 104.0° |
| C3' | C2' | H2' | 111.9° | 110.5° |
| C3' | C2' | H2'' | 111.9° | 110.5° |
| C1' | C2' | H2' | 111.9° | 110.5° |
| C1' | C2' | H2'' | 111.9° | 110.5° |
| C2' | C1' | N1 | 114.3° | 110.3° |
| C2' | C1' | H1' | 107.8° | 110.4° |
| H2' | C2' | H2'' | 106.9° | 110.6° |
| N1 | C1' | H1' | 106.3° | 110.4° |
| C1' | N1 | C2 | 118.9° | 119.8° |
| C1' | N1 | C6 | 120.7° | 119.8° |
| C2 | N1 | C6 | 120.3° | 120.4° |
| N1 | C2 | O2 | 119.0° | 119.4° |
| N1 | C2 | N3 | 119.2° | 121.1° |
| N1 | C6 | C5 | 121.1° | 119.2° |
| N1 | C6 | H6 | 119.4° | 120.4° |
| O2 | C2 | N3 | 121.8° | 119.5° |
| C2 | N3 | C4 | 120.0° | 120.7° |
| N3 | C4 | N4 | 117.9° | 120.2° |
| N3 | C4 | C5 | 122.0° | 119.6° |
| N4 | C4 | C5 | 120.1° | 120.1° |
| C4 | N4 | H41 | 120.0° | 119.9° |
| C4 | N4 | H42 | 120.0° | 120.0° |
| C4 | C5 | C6 | 117.4° | 119.0° |
| C4 | C5 | H5 | 121.3° | 120.5° |
| H41 | N4 | H42 | 120.0° | 120.0° |
| C6 | C5 | H5 | 121.3° | 120.5° |
| C5 | C6 | H6 | 119.5° | 120.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 123.9° | 120.0° |
| OP3 | P | OP1 | O5' | 111.9° | 120.0° |
| OP3 | P | OP2 | O5' | 112.2° | 120.0° |
| OP3 | P | OP2 | HOP2 | 123.7° | 60.0° |
| OP3 | P | O5' | C5' | 85.4° | 175.0° |
| HOP3 | OP3 | P | OP1 | 0.0° | 60.0° |
| HOP3 | OP3 | P | OP2 | 130.5° | 60.0° |
| HOP3 | OP3 | P | O5' | 114.6° | 180.0° |
| OP1 | P | OP2 | O5' | 124.1° | 120.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
| OP1 | P | O5' | C5' | 29.0° | 54.9° |
| OP2 | P | O5' | C5' | 159.7° | 65.1° |
| O5' | P | OP2 | HOP2 | 124.2° | 60.0° |
| P | O5' | C5' | C4' | 139.7° | 180.0° |
| P | O5' | C5' | H5' | 19.7° | 60.0° |
| P | O5' | C5' | H5'' | 100.3° | 60.1° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'' | 120.0° | 120.0° |
| O5' | C5' | H5' | H5'' | 119.7° | 120.0° |
| O5' | C5' | C4' | O4' | 148.2° | 66.4° |
| O5' | C5' | C4' | C3' | 30.0° | 178.2° |
| O5' | C5' | C4' | H4' | 88.8° | 55.8° |
| C4' | C5' | H5' | H5'' | 119.7° | 119.9° |
| C5' | C4' | O4' | C3' | 124.0° | 118.9° |
| C5' | C4' | O4' | H4' | 117.0° | 122.2° |
| C5' | C4' | C3' | H4' | 117.0° | 122.3° |
| C5' | C4' | O4' | C1' | 115.3° | 159.4° |
| C5' | C4' | C3' | O3' | 148.7° | 98.5° |
| C5' | C4' | C3' | C2' | 93.1° | 142.8° |
| C5' | C4' | C3' | H3' | 29.6° | 24.1° |
| H5' | C5' | C4' | O4' | 28.3° | 173.6° |
| H5' | C5' | C4' | C3' | 90.0° | 58.1° |
| H5' | C5' | C4' | H4' | 151.2° | 64.2° |
| H5'' | C5' | C4' | O4' | 91.8° | 53.6° |
| H5'' | C5' | C4' | C3' | 150.0° | 61.8° |
| H5'' | C5' | C4' | H4' | 31.2° | 175.8° |
| O4' | C4' | C3' | H4' | 123.0° | 118.9° |
| O4' | C4' | C3' | O3' | 91.3° | 142.6° |
| O4' | C4' | C3' | C2' | 26.9° | 24.0° |
| O4' | C4' | C3' | H3' | 149.7° | 94.8° |
| C4' | O4' | C1' | C2' | 13.3° | 40.5° |
| C4' | O4' | C1' | N1 | 136.6° | 159.3° |
| C4' | O4' | C1' | H1' | 105.5° | 78.4° |
| C3' | C4' | O4' | C1' | 8.7° | 40.5° |
| C4' | C3' | O3' | C2' | 113.5° | 114.6° |
| C4' | C3' | O3' | H3' | 123.3° | 122.6° |
| C4' | C3' | C2' | H3' | 122.9° | 118.6° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C4' | C3' | C2' | C1' | 33.9° | 0.0° |
| C4' | C3' | C2' | H2' | 153.9° | 118.7° |
| C4' | C3' | C2' | H2'' | 86.1° | 118.6° |
| H4' | C4' | O4' | C1' | 127.6° | 78.4° |
| H4' | C4' | C3' | O3' | 31.7° | 23.7° |
| H4' | C4' | C3' | C2' | 149.9° | 94.9° |
| H4' | C4' | C3' | H3' | 87.3° | 146.4° |
| O4' | C1' | C2' | C3' | 29.7° | 24.0° |
| O4' | C1' | C2' | N1 | 119.2° | 118.8° |
| O4' | C1' | C2' | H1' | 122.9° | 118.9° |
| O4' | C1' | C2' | H2' | 149.7° | 142.6° |
| O4' | C1' | C2' | H2'' | 90.3° | 94.6° |
| O4' | C1' | N1 | H1' | 122.8° | 122.3° |
| O4' | C1' | N1 | C2 | 151.4° | 178.5° |
| O4' | C1' | N1 | C6 | 28.6° | 1.2° |
| O3' | C3' | C2' | H3' | 119.0° | 122.7° |
| O3' | C3' | C2' | C1' | 84.2° | 118.6° |
| O3' | C3' | C2' | H2' | 35.8° | 0.0° |
| O3' | C3' | C2' | H2'' | 155.8° | 122.8° |
| C2' | C3' | O3' | HO3' | 66.5° | 65.3° |
| C3' | C2' | C1' | H2' | 120.0° | 118.6° |
| C3' | C2' | C1' | H2'' | 120.0° | 118.6° |
| C3' | C2' | H2' | H2'' | 122.8° | 122.7° |
| C3' | C2' | C1' | N1 | 148.9° | 142.8° |
| C3' | C2' | C1' | H1' | 93.2° | 94.9° |
| H3' | C3' | O3' | HO3' | 56.7° | 57.4° |
| H3' | C3' | C2' | C1' | 156.8° | 118.7° |
| H3' | C3' | C2' | H2' | 83.2° | 122.7° |
| H3' | C3' | C2' | H2'' | 36.8° | 0.0° |
| C1' | C2' | H2' | H2'' | 122.8° | 122.7° |
| C2' | C1' | N1 | H1' | 118.7° | 122.3° |
| C2' | C1' | N1 | C2 | 90.2° | 63.2° |
| C2' | C1' | N1 | C6 | 89.8° | 116.6° |
| H2' | C2' | C1' | N1 | 91.1° | 98.6° |
| H2' | C2' | C1' | H1' | 26.9° | 23.7° |
| H2'' | C2' | C1' | N1 | 28.9° | 24.2° |
| H2'' | C2' | C1' | H1' | 146.8° | 146.5° |
| C1' | N1 | C2 | C6 | 179.9° | 179.8° |
| C1' | N1 | C2 | O2 | 0.1° | 0.0° |
| C1' | N1 | C2 | N3 | 179.9° | 180.0° |
| C1' | N1 | C6 | C5 | 179.8° | 179.7° |
| C1' | N1 | C6 | H6 | 0.2° | 0.1° |
| H1' | C1' | N1 | C2 | 28.6° | 59.2° |
| H1' | C1' | N1 | C6 | 151.5° | 121.1° |
| N1 | C2 | O2 | N3 | 179.9° | 179.9° |
| N1 | C2 | N3 | C4 | 0.0° | 0.0° |
| C2 | N1 | C6 | C5 | 0.1° | 0.5° |
| C2 | N1 | C6 | H6 | 179.9° | 179.7° |
| C6 | N1 | C2 | O2 | 180.0° | 179.8° |
| C6 | N1 | C2 | N3 | 0.1° | 0.3° |
| N1 | C6 | C5 | C4 | 0.1° | 0.5° |
| N1 | C6 | C5 | H6 | 180.0° | 179.8° |
| N1 | C6 | C5 | H5 | 179.9° | 179.7° |
| O2 | C2 | N3 | C4 | 180.0° | 179.9° |
| C2 | N3 | C4 | N4 | 179.9° | 179.9° |
| C2 | N3 | C4 | C5 | 0.0° | 0.0° |
| N3 | C4 | N4 | C5 | 179.9° | 179.9° |
| N3 | C4 | N4 | H41 | 0.0° | 0.0° |
| N3 | C4 | N4 | H42 | 180.0° | 180.0° |
| N3 | C4 | C5 | C6 | 0.0° | 0.3° |
| N3 | C4 | C5 | H5 | 180.0° | 180.0° |
| C4 | N4 | H41 | H42 | 180.0° | 180.0° |
| N4 | C4 | C5 | C6 | 179.9° | 179.7° |
| N4 | C4 | C5 | H5 | 0.1° | 0.1° |
| C5 | C4 | N4 | H41 | 179.9° | 179.9° |
| C5 | C4 | N4 | H42 | 0.1° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 179.8° |
| C4 | C5 | C6 | H6 | 179.9° | 179.7° |
| H5 | C5 | C6 | H6 | 0.1° | 0.1° |
