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0DA

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C8AN9Asing1.36Å1.36ÅAromatic
C8AN7Adoub1.30Å1.31ÅAromatic
N9AC4Asing1.37Å1.37ÅAromatic
N9AC1'sing1.46Å1.47Å
C4AC5Adoub1.40Å1.37ÅAromatic
C4AN3Asing1.33Å1.36ÅAromatic
C5AN7Asing1.35Å1.40ÅAromatic
C5AC6Asing1.41Å1.41ÅAromatic
N3AC2Adoub1.32Å1.33ÅAromatic
C2AN1Asing1.32Å1.33ÅAromatic
N1AC6Adoub1.33Å1.34ÅAromatic
C6AN6Asing1.38Å1.32Å
C4'O4'sing1.44Å1.40Å
C4'C3'sing1.54Å1.53Å
O4'C1'sing1.44Å1.40Å
C3'C2'sing1.55Å1.52Å
C2'C1'sing1.55Å1.53Å
C3'O3'sing1.43Å1.43Å
C4'C5'sing1.53Å1.54Å
C5'O5'sing1.43Å1.43Å
O5'Psing1.61Å1.72Å
POP2sing1.61Å1.72Å
POP3sing1.61Å1.72Å
POP1doub1.48Å1.72Å
C8AH8Asing1.08Å1.08Å
C2AH2Asing1.08Å1.08Å
N6AHN61sing0.97Å1.00Å
N6AHN62sing0.97Å1.00Å
C4'H4'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
C2'H2''sing1.09Å1.10Å
C1'H1'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C5'H5'sing1.09Å1.10Å
C5'H5''sing1.09Å1.10Å
OP2H2Psing0.97Å0.95Å
OP3HOP3sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N9AC8AN7A114.2°110.0°
C8AN9AC4A105.9°107.4°
C8AN9AC1'126.8°126.3°
N9AC8AH8A122.9°125.0°
C8AN7AC5A103.0°109.4°
N7AC8AH8A122.9°125.0°
C4AN9AC1'126.1°126.3°
N9AC4AC5A105.8°106.0°
N9AC4AN3A127.1°134.9°
N9AC1'O4'107.0°110.4°
N9AC1'C2'116.4°110.3°
N9AC1'H1'106.3°110.3°
C5AC4AN3A127.2°119.1°
C4AC5AN7A111.0°107.2°
C4AC5AC6A114.5°118.1°
C4AN3AC2A111.6°120.6°
N7AC5AC6A134.5°134.7°
C5AC6AN1A121.0°118.5°
C5AC6AN6A122.6°120.8°
N3AC2AN1A128.4°122.5°
N3AC2AH2A115.8°118.7°
C2AN1AC6A117.3°121.1°
N1AC2AH2A115.8°118.8°
N1AC6AN6A116.4°120.7°
C6AN6AHN61109.5°120.0°
C6AN6AHN62109.5°120.1°
O4'C4'C3'109.3°104.8°
C4'O4'C1'109.6°105.2°
O4'C4'C5'111.9°110.4°
O4'C4'H4'109.6°110.4°
C4'C3'C2'102.5°104.1°
C4'C3'O3'86.0°110.5°
C3'C4'C5'114.1°110.4°
C3'C4'H4'107.2°110.4°
C4'C3'H3'122.8°110.5°
O4'C1'C2'108.8°104.8°
O4'C1'H1'114.2°110.4°
C3'C2'C1'103.3°104.0°
C2'C3'O3'96.2°110.5°
C2'C3'H3'115.4°110.5°
C3'C2'H2'111.6°110.5°
C3'C2'H2''111.6°110.5°
C1'C2'H2'111.6°110.5°
C1'C2'H2''111.6°110.5°
C2'C1'H1'104.4°110.4°
O3'C3'H3'127.5°110.6°
C3'O3'HO3'109.5°114.0°
C4'C5'O5'104.8°109.5°
C5'C4'H4'104.4°110.4°
C4'C5'H5'111.1°109.4°
C4'C5'H5''111.1°109.5°
C5'O5'P120.0°123.0°
O5'C5'H5'111.0°109.4°
O5'C5'H5''111.0°109.5°
O5'POP2115.1°109.5°
O5'POP3129.6°109.5°
O5'POP1107.1°109.4°
OP2POP375.5°109.5°
OP2POP1111.6°109.5°
POP2H2P109.5°114.0°
OP3POP1114.0°109.4°
POP3HOP3109.5°114.1°
HN61N6AHN62109.4°120.0°
H2'C2'H2''107.3°110.6°
H5'C5'H5''107.8°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N9AC8AN7AH8A180.0°179.7°
C8AN9AC4AC1'168.3°179.9°
C8AN9AC4AC5A3.0°0.0°
C8AN9AC4AN3A176.7°180.0°
N9AC8AN7AC5A2.6°0.0°
C8AN9AC1'O4'38.7°23.5°
C8AN9AC1'C2'83.2°91.9°
C8AN9AC1'H1'161.1°145.8°
N7AC8AN9AC4A3.7°0.0°
N7AC8AN9AC1'164.5°180.0°
C8AN7AC5AC4A0.6°0.0°
C8AN7AC5AC6A178.0°179.9°
N9AC4AC5AN3A179.7°180.0°
N9AC4AC5AN7A1.6°0.0°
N9AC4AC5AC6A179.6°179.9°
N9AC4AN3AC2A178.8°179.9°
C4AN9AC1'O4'127.1°156.5°
C4AN9AC1'C2'111.0°88.2°
C4AN9AC8AH8A176.3°179.7°
C4AN9AC1'H1'4.7°34.2°
C1'N9AC4AC5A165.3°179.9°
C1'N9AC4AN3A15.1°0.1°
N9AC1'O4'C4'116.8°159.3°
N9AC1'O4'C2'126.5°118.8°
N9AC1'O4'H1'117.3°122.3°
N9AC1'C2'C3'98.7°142.8°
N9AC1'C2'H1'116.8°122.3°
C1'N9AC8AH8A15.5°0.3°
N9AC1'C2'H2'141.3°98.6°
N9AC1'C2'H2''21.3°24.2°
C4AC5AN7AC6A178.6°179.9°
C5AC4AN3AC2A0.8°0.0°
C4AC5AC6AN1A1.8°0.1°
C4AC5AC6AN6A179.7°180.0°
N3AC4AC5AN7A178.1°180.0°
N3AC4AC5AC6A0.8°0.0°
C4AN3AC2AN1A1.7°0.1°
C4AN3AC2AH2A178.3°180.0°
N7AC5AC6AN1A176.8°180.0°
N7AC5AC6AN6A1.8°0.1°
C5AN7AC8AH8A177.4°179.7°
C5AC6AN1AC2A1.1°0.1°
C5AC6AN1AN6A178.6°179.9°
C5AC6AN6AHN61178.6°0.1°
C5AC6AN6AHN6258.6°180.0°
N3AC2AN1AH2A180.0°179.9°
N3AC2AN1AC6A0.8°0.1°
C2AN1AC6AN6A179.8°180.0°
C6AN1AC2AH2A179.3°180.0°
N1AC6AN6AHN610.0°180.0°
N1AC6AN6AHN62120.0°0.0°
C6AN6AHN61HN62120.0°180.0°
O4'C4'C3'C5'126.2°118.8°
O4'C4'C3'H4'118.8°118.9°
O4'C4'C3'C2'20.6°24.0°
C4'O4'C1'C2'9.7°40.5°
O4'C4'C3'O3'116.1°142.6°
O4'C4'C5'H4'118.5°122.3°
O4'C4'C5'O5'131.1°66.4°
O4'C4'C3'H3'111.0°94.7°
C4'O4'C1'H1'125.9°78.4°
O4'C4'C5'H5'11.1°53.6°
O4'C4'C5'H5''108.9°173.6°
C3'C4'O4'C1'7.1°40.5°
C4'C3'C2'O3'87.3°118.6°
C4'C3'C2'H3'135.9°118.6°
C4'C3'C2'C1'24.7°0.0°
C4'C3'O3'H3'129.1°122.7°
C3'C4'C5'H4'116.7°122.3°
C3'C4'C5'O5'104.0°178.2°
C4'C3'C2'H2'95.2°118.6°
C4'C3'C2'H2''144.7°118.6°
C4'C3'O3'HO3'180.0°180.0°
C3'C4'C5'H5'136.0°61.8°
C3'C4'C5'H5''16.0°58.2°
O4'C1'C2'C3'22.3°24.0°
O4'C1'C2'H1'122.3°118.9°
C1'O4'C4'C5'134.6°159.4°
C1'O4'C4'H4'110.1°78.4°
O4'C1'C2'H2'97.7°142.6°
O4'C1'C2'H2''142.3°94.6°
C3'C2'C1'H2'120.0°118.6°
C3'C2'C1'H2''120.0°118.6°
C2'C3'O3'H3'128.8°122.7°
C2'C3'C4'C5'146.8°142.8°
C2'C3'C4'H4'98.2°94.9°
C3'C2'H2'H2''122.5°122.7°
C3'C2'C1'H1'144.6°94.9°
C2'C3'O3'HO3'77.9°65.4°
C1'C2'C3'O3'112.0°118.6°
C1'C2'C3'H3'111.2°118.7°
C1'C2'H2'H2''122.5°122.7°
O3'C3'C4'C5'117.7°98.5°
O3'C3'C4'H4'2.6°23.8°
O3'C3'C2'H2'7.9°0.1°
O3'C3'C2'H2''127.9°122.7°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5''120.0°120.0°
C4'C5'O5'P178.3°180.0°
C5'C4'C3'H3'15.2°24.2°
C4'C5'H5'H5''121.9°120.0°
C5'O5'POP28.2°64.9°
C5'O5'POP399.8°175.0°
C5'O5'POP1116.4°55.1°
O5'C5'C4'H4'12.6°55.9°
O5'C5'H5'H5''121.9°120.0°
O5'POP2OP3127.3°120.0°
O5'POP2OP1122.3°120.0°
O5'POP3OP1141.8°119.9°
PO5'C5'H5'61.7°60.1°
PO5'C5'H5''58.3°59.9°
O5'POP2H2P122.2°60.0°
O5'POP3HOP3141.8°180.0°
OP2POP3OP1107.5°120.0°
OP2POP3HOP3107.5°60.0°
OP3POP2H2P110.5°60.1°
OP1POP2H2P0.0°179.9°
OP1POP3HOP30.0°60.0°
H4'C4'C3'H3'130.2°146.5°
H4'C4'C5'H5'107.4°175.8°
H4'C4'C5'H5''132.6°64.2°
H3'C3'C2'H2'128.9°122.8°
H3'C3'C2'H2''8.9°0.0°
H3'C3'O3'HO3'50.9°57.3°
H2'C2'C1'H1'24.6°23.7°
H2''C2'C1'H1'95.4°146.5°

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PDB entries from 2024-09-11

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