0DA
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C8A | N9A | sing | 1.36Å | 1.36Å | Aromatic |
C8A | N7A | doub | 1.30Å | 1.31Å | Aromatic |
N9A | C4A | sing | 1.37Å | 1.37Å | Aromatic |
N9A | C1' | sing | 1.46Å | 1.47Å | |
C4A | C5A | doub | 1.40Å | 1.37Å | Aromatic |
C4A | N3A | sing | 1.33Å | 1.36Å | Aromatic |
C5A | N7A | sing | 1.35Å | 1.40Å | Aromatic |
C5A | C6A | sing | 1.41Å | 1.41Å | Aromatic |
N3A | C2A | doub | 1.32Å | 1.33Å | Aromatic |
C2A | N1A | sing | 1.32Å | 1.33Å | Aromatic |
N1A | C6A | doub | 1.33Å | 1.34Å | Aromatic |
C6A | N6A | sing | 1.38Å | 1.32Å | |
C4' | O4' | sing | 1.44Å | 1.40Å | |
C4' | C3' | sing | 1.54Å | 1.53Å | |
O4' | C1' | sing | 1.44Å | 1.40Å | |
C3' | C2' | sing | 1.55Å | 1.52Å | |
C2' | C1' | sing | 1.55Å | 1.53Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C4' | C5' | sing | 1.53Å | 1.54Å | |
C5' | O5' | sing | 1.43Å | 1.43Å | |
O5' | P | sing | 1.61Å | 1.72Å | |
P | OP2 | sing | 1.61Å | 1.72Å | |
P | OP3 | sing | 1.61Å | 1.72Å | |
P | OP1 | doub | 1.48Å | 1.72Å | |
C8A | H8A | sing | 1.08Å | 1.08Å | |
C2A | H2A | sing | 1.08Å | 1.08Å | |
N6A | HN61 | sing | 0.97Å | 1.00Å | |
N6A | HN62 | sing | 0.97Å | 1.00Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C2' | H2'' | sing | 1.09Å | 1.10Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'' | sing | 1.09Å | 1.10Å | |
OP2 | H2P | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N9A | C8A | N7A | 114.2° | 110.0° |
C8A | N9A | C4A | 105.9° | 107.4° |
C8A | N9A | C1' | 126.8° | 126.3° |
N9A | C8A | H8A | 122.9° | 125.0° |
C8A | N7A | C5A | 103.0° | 109.4° |
N7A | C8A | H8A | 122.9° | 125.0° |
C4A | N9A | C1' | 126.1° | 126.3° |
N9A | C4A | C5A | 105.8° | 106.0° |
N9A | C4A | N3A | 127.1° | 134.9° |
N9A | C1' | O4' | 107.0° | 110.4° |
N9A | C1' | C2' | 116.4° | 110.3° |
N9A | C1' | H1' | 106.3° | 110.3° |
C5A | C4A | N3A | 127.2° | 119.1° |
C4A | C5A | N7A | 111.0° | 107.2° |
C4A | C5A | C6A | 114.5° | 118.1° |
C4A | N3A | C2A | 111.6° | 120.6° |
N7A | C5A | C6A | 134.5° | 134.7° |
C5A | C6A | N1A | 121.0° | 118.5° |
C5A | C6A | N6A | 122.6° | 120.8° |
N3A | C2A | N1A | 128.4° | 122.5° |
N3A | C2A | H2A | 115.8° | 118.7° |
C2A | N1A | C6A | 117.3° | 121.1° |
N1A | C2A | H2A | 115.8° | 118.8° |
N1A | C6A | N6A | 116.4° | 120.7° |
C6A | N6A | HN61 | 109.5° | 120.0° |
C6A | N6A | HN62 | 109.5° | 120.1° |
O4' | C4' | C3' | 109.3° | 104.8° |
C4' | O4' | C1' | 109.6° | 105.2° |
O4' | C4' | C5' | 111.9° | 110.4° |
O4' | C4' | H4' | 109.6° | 110.4° |
C4' | C3' | C2' | 102.5° | 104.1° |
C4' | C3' | O3' | 86.0° | 110.5° |
C3' | C4' | C5' | 114.1° | 110.4° |
C3' | C4' | H4' | 107.2° | 110.4° |
C4' | C3' | H3' | 122.8° | 110.5° |
O4' | C1' | C2' | 108.8° | 104.8° |
O4' | C1' | H1' | 114.2° | 110.4° |
C3' | C2' | C1' | 103.3° | 104.0° |
C2' | C3' | O3' | 96.2° | 110.5° |
C2' | C3' | H3' | 115.4° | 110.5° |
C3' | C2' | H2' | 111.6° | 110.5° |
C3' | C2' | H2'' | 111.6° | 110.5° |
C1' | C2' | H2' | 111.6° | 110.5° |
C1' | C2' | H2'' | 111.6° | 110.5° |
C2' | C1' | H1' | 104.4° | 110.4° |
O3' | C3' | H3' | 127.5° | 110.6° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C4' | C5' | O5' | 104.8° | 109.5° |
C5' | C4' | H4' | 104.4° | 110.4° |
C4' | C5' | H5' | 111.1° | 109.4° |
C4' | C5' | H5'' | 111.1° | 109.5° |
C5' | O5' | P | 120.0° | 123.0° |
O5' | C5' | H5' | 111.0° | 109.4° |
O5' | C5' | H5'' | 111.0° | 109.5° |
O5' | P | OP2 | 115.1° | 109.5° |
O5' | P | OP3 | 129.6° | 109.5° |
O5' | P | OP1 | 107.1° | 109.4° |
OP2 | P | OP3 | 75.5° | 109.5° |
OP2 | P | OP1 | 111.6° | 109.5° |
P | OP2 | H2P | 109.5° | 114.0° |
OP3 | P | OP1 | 114.0° | 109.4° |
P | OP3 | HOP3 | 109.5° | 114.1° |
HN61 | N6A | HN62 | 109.4° | 120.0° |
H2' | C2' | H2'' | 107.3° | 110.6° |
H5' | C5' | H5'' | 107.8° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N9A | C8A | N7A | H8A | 180.0° | 179.7° |
C8A | N9A | C4A | C1' | 168.3° | 179.9° |
C8A | N9A | C4A | C5A | 3.0° | 0.0° |
C8A | N9A | C4A | N3A | 176.7° | 180.0° |
N9A | C8A | N7A | C5A | 2.6° | 0.0° |
C8A | N9A | C1' | O4' | 38.7° | 23.5° |
C8A | N9A | C1' | C2' | 83.2° | 91.9° |
C8A | N9A | C1' | H1' | 161.1° | 145.8° |
N7A | C8A | N9A | C4A | 3.7° | 0.0° |
N7A | C8A | N9A | C1' | 164.5° | 180.0° |
C8A | N7A | C5A | C4A | 0.6° | 0.0° |
C8A | N7A | C5A | C6A | 178.0° | 179.9° |
N9A | C4A | C5A | N3A | 179.7° | 180.0° |
N9A | C4A | C5A | N7A | 1.6° | 0.0° |
N9A | C4A | C5A | C6A | 179.6° | 179.9° |
N9A | C4A | N3A | C2A | 178.8° | 179.9° |
C4A | N9A | C1' | O4' | 127.1° | 156.5° |
C4A | N9A | C1' | C2' | 111.0° | 88.2° |
C4A | N9A | C8A | H8A | 176.3° | 179.7° |
C4A | N9A | C1' | H1' | 4.7° | 34.2° |
C1' | N9A | C4A | C5A | 165.3° | 179.9° |
C1' | N9A | C4A | N3A | 15.1° | 0.1° |
N9A | C1' | O4' | C4' | 116.8° | 159.3° |
N9A | C1' | O4' | C2' | 126.5° | 118.8° |
N9A | C1' | O4' | H1' | 117.3° | 122.3° |
N9A | C1' | C2' | C3' | 98.7° | 142.8° |
N9A | C1' | C2' | H1' | 116.8° | 122.3° |
C1' | N9A | C8A | H8A | 15.5° | 0.3° |
N9A | C1' | C2' | H2' | 141.3° | 98.6° |
N9A | C1' | C2' | H2'' | 21.3° | 24.2° |
C4A | C5A | N7A | C6A | 178.6° | 179.9° |
C5A | C4A | N3A | C2A | 0.8° | 0.0° |
C4A | C5A | C6A | N1A | 1.8° | 0.1° |
C4A | C5A | C6A | N6A | 179.7° | 180.0° |
N3A | C4A | C5A | N7A | 178.1° | 180.0° |
N3A | C4A | C5A | C6A | 0.8° | 0.0° |
C4A | N3A | C2A | N1A | 1.7° | 0.1° |
C4A | N3A | C2A | H2A | 178.3° | 180.0° |
N7A | C5A | C6A | N1A | 176.8° | 180.0° |
N7A | C5A | C6A | N6A | 1.8° | 0.1° |
C5A | N7A | C8A | H8A | 177.4° | 179.7° |
C5A | C6A | N1A | C2A | 1.1° | 0.1° |
C5A | C6A | N1A | N6A | 178.6° | 179.9° |
C5A | C6A | N6A | HN61 | 178.6° | 0.1° |
C5A | C6A | N6A | HN62 | 58.6° | 180.0° |
N3A | C2A | N1A | H2A | 180.0° | 179.9° |
N3A | C2A | N1A | C6A | 0.8° | 0.1° |
C2A | N1A | C6A | N6A | 179.8° | 180.0° |
C6A | N1A | C2A | H2A | 179.3° | 180.0° |
N1A | C6A | N6A | HN61 | 0.0° | 180.0° |
N1A | C6A | N6A | HN62 | 120.0° | 0.0° |
C6A | N6A | HN61 | HN62 | 120.0° | 180.0° |
O4' | C4' | C3' | C5' | 126.2° | 118.8° |
O4' | C4' | C3' | H4' | 118.8° | 118.9° |
O4' | C4' | C3' | C2' | 20.6° | 24.0° |
C4' | O4' | C1' | C2' | 9.7° | 40.5° |
O4' | C4' | C3' | O3' | 116.1° | 142.6° |
O4' | C4' | C5' | H4' | 118.5° | 122.3° |
O4' | C4' | C5' | O5' | 131.1° | 66.4° |
O4' | C4' | C3' | H3' | 111.0° | 94.7° |
C4' | O4' | C1' | H1' | 125.9° | 78.4° |
O4' | C4' | C5' | H5' | 11.1° | 53.6° |
O4' | C4' | C5' | H5'' | 108.9° | 173.6° |
C3' | C4' | O4' | C1' | 7.1° | 40.5° |
C4' | C3' | C2' | O3' | 87.3° | 118.6° |
C4' | C3' | C2' | H3' | 135.9° | 118.6° |
C4' | C3' | C2' | C1' | 24.7° | 0.0° |
C4' | C3' | O3' | H3' | 129.1° | 122.7° |
C3' | C4' | C5' | H4' | 116.7° | 122.3° |
C3' | C4' | C5' | O5' | 104.0° | 178.2° |
C4' | C3' | C2' | H2' | 95.2° | 118.6° |
C4' | C3' | C2' | H2'' | 144.7° | 118.6° |
C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
C3' | C4' | C5' | H5' | 136.0° | 61.8° |
C3' | C4' | C5' | H5'' | 16.0° | 58.2° |
O4' | C1' | C2' | C3' | 22.3° | 24.0° |
O4' | C1' | C2' | H1' | 122.3° | 118.9° |
C1' | O4' | C4' | C5' | 134.6° | 159.4° |
C1' | O4' | C4' | H4' | 110.1° | 78.4° |
O4' | C1' | C2' | H2' | 97.7° | 142.6° |
O4' | C1' | C2' | H2'' | 142.3° | 94.6° |
C3' | C2' | C1' | H2' | 120.0° | 118.6° |
C3' | C2' | C1' | H2'' | 120.0° | 118.6° |
C2' | C3' | O3' | H3' | 128.8° | 122.7° |
C2' | C3' | C4' | C5' | 146.8° | 142.8° |
C2' | C3' | C4' | H4' | 98.2° | 94.9° |
C3' | C2' | H2' | H2'' | 122.5° | 122.7° |
C3' | C2' | C1' | H1' | 144.6° | 94.9° |
C2' | C3' | O3' | HO3' | 77.9° | 65.4° |
C1' | C2' | C3' | O3' | 112.0° | 118.6° |
C1' | C2' | C3' | H3' | 111.2° | 118.7° |
C1' | C2' | H2' | H2'' | 122.5° | 122.7° |
O3' | C3' | C4' | C5' | 117.7° | 98.5° |
O3' | C3' | C4' | H4' | 2.6° | 23.8° |
O3' | C3' | C2' | H2' | 7.9° | 0.1° |
O3' | C3' | C2' | H2'' | 127.9° | 122.7° |
C4' | C5' | O5' | H5' | 120.0° | 120.0° |
C4' | C5' | O5' | H5'' | 120.0° | 120.0° |
C4' | C5' | O5' | P | 178.3° | 180.0° |
C5' | C4' | C3' | H3' | 15.2° | 24.2° |
C4' | C5' | H5' | H5'' | 121.9° | 120.0° |
C5' | O5' | P | OP2 | 8.2° | 64.9° |
C5' | O5' | P | OP3 | 99.8° | 175.0° |
C5' | O5' | P | OP1 | 116.4° | 55.1° |
O5' | C5' | C4' | H4' | 12.6° | 55.9° |
O5' | C5' | H5' | H5'' | 121.9° | 120.0° |
O5' | P | OP2 | OP3 | 127.3° | 120.0° |
O5' | P | OP2 | OP1 | 122.3° | 120.0° |
O5' | P | OP3 | OP1 | 141.8° | 119.9° |
P | O5' | C5' | H5' | 61.7° | 60.1° |
P | O5' | C5' | H5'' | 58.3° | 59.9° |
O5' | P | OP2 | H2P | 122.2° | 60.0° |
O5' | P | OP3 | HOP3 | 141.8° | 180.0° |
OP2 | P | OP3 | OP1 | 107.5° | 120.0° |
OP2 | P | OP3 | HOP3 | 107.5° | 60.0° |
OP3 | P | OP2 | H2P | 110.5° | 60.1° |
OP1 | P | OP2 | H2P | 0.0° | 179.9° |
OP1 | P | OP3 | HOP3 | 0.0° | 60.0° |
H4' | C4' | C3' | H3' | 130.2° | 146.5° |
H4' | C4' | C5' | H5' | 107.4° | 175.8° |
H4' | C4' | C5' | H5'' | 132.6° | 64.2° |
H3' | C3' | C2' | H2' | 128.9° | 122.8° |
H3' | C3' | C2' | H2'' | 8.9° | 0.0° |
H3' | C3' | O3' | HO3' | 50.9° | 57.3° |
H2' | C2' | C1' | H1' | 24.6° | 23.7° |
H2'' | C2' | C1' | H1' | 95.4° | 146.5° |