0C
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.61Å | 1.58Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| P | OP1 | doub | 1.48Å | 1.49Å | |
| P | OP2 | sing | 1.61Å | 1.49Å | |
| P | O5' | sing | 1.61Å | 1.62Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C3' | O3' | sing | 1.43Å | 1.40Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.40Å | |
| C2' | C1' | sing | 1.54Å | 1.51Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.46Å | 1.49Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.35Å | 1.42Å | |
| N1 | C6 | sing | 1.36Å | 1.38Å | |
| C2 | O2 | doub | 1.22Å | 1.25Å | |
| C2 | N3 | sing | 1.33Å | 1.37Å | |
| N3 | C4 | doub | 1.33Å | 1.35Å | |
| C4 | N4 | sing | 1.37Å | 1.36Å | |
| C4 | C5 | sing | 1.41Å | 1.43Å | |
| N4 | H41 | sing | 0.97Å | 1.00Å | |
| N4 | H42 | sing | 0.97Å | 1.00Å | |
| C5 | C6 | doub | 1.35Å | 1.34Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| OP3 | P | OP1 | 108.9° | 109.5° |
| OP3 | P | OP2 | 106.6° | 109.5° |
| OP3 | P | O5' | 108.2° | 109.4° |
| OP1 | P | OP2 | 120.2° | 109.5° |
| OP1 | P | O5' | 107.9° | 109.5° |
| OP2 | P | O5' | 104.4° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 113.9° |
| P | O5' | C5' | 119.6° | 123.0° |
| O5' | C5' | C4' | 111.7° | 109.5° |
| O5' | C5' | H5' | 108.7° | 109.5° |
| O5' | C5' | H5'' | 108.7° | 109.5° |
| C4' | C5' | H5' | 108.8° | 109.5° |
| C4' | C5' | H5'' | 108.7° | 109.5° |
| C5' | C4' | O4' | 112.5° | 110.4° |
| C5' | C4' | C3' | 116.7° | 110.3° |
| C5' | C4' | H4' | 100.5° | 110.3° |
| H5' | C5' | H5'' | 110.2° | 109.4° |
| O4' | C4' | C3' | 104.0° | 104.8° |
| O4' | C4' | H4' | 113.9° | 110.4° |
| C4' | O4' | C1' | 107.8° | 105.3° |
| C3' | C4' | H4' | 109.6° | 110.5° |
| C4' | C3' | O3' | 111.2° | 110.5° |
| C4' | C3' | C2' | 98.7° | 104.0° |
| C4' | C3' | H3' | 117.1° | 110.5° |
| O4' | C1' | C2' | 106.8° | 104.8° |
| O4' | C1' | N1 | 109.9° | 110.4° |
| O4' | C1' | H1' | 111.4° | 110.4° |
| O3' | C3' | C2' | 114.6° | 110.5° |
| O3' | C3' | H3' | 102.0° | 110.5° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C2' | C3' | H3' | 113.9° | 110.6° |
| C3' | C2' | O2' | 113.0° | 110.5° |
| C3' | C2' | C1' | 99.8° | 104.1° |
| C3' | C2' | H2' | 114.5° | 110.5° |
| O2' | C2' | C1' | 112.3° | 110.5° |
| O2' | C2' | H2' | 102.6° | 110.4° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C1' | C2' | H2' | 115.2° | 110.6° |
| C2' | C1' | N1 | 110.7° | 110.4° |
| C2' | C1' | H1' | 110.5° | 110.4° |
| N1 | C1' | H1' | 107.5° | 110.4° |
| C1' | N1 | C2 | 119.7° | 119.8° |
| C1' | N1 | C6 | 120.5° | 119.8° |
| C2 | N1 | C6 | 119.9° | 120.3° |
| N1 | C2 | O2 | 119.9° | 119.5° |
| N1 | C2 | N3 | 118.2° | 121.1° |
| N1 | C6 | C5 | 121.9° | 119.3° |
| N1 | C6 | H6 | 119.0° | 120.4° |
| O2 | C2 | N3 | 121.9° | 119.4° |
| C2 | N3 | C4 | 120.9° | 120.7° |
| N3 | C4 | N4 | 119.3° | 120.2° |
| N3 | C4 | C5 | 121.4° | 119.6° |
| N4 | C4 | C5 | 119.3° | 120.2° |
| C4 | N4 | H41 | 120.0° | 120.1° |
| C4 | N4 | H42 | 120.0° | 120.0° |
| C4 | C5 | C6 | 117.6° | 119.0° |
| C4 | C5 | H5 | 121.2° | 120.5° |
| H41 | N4 | H42 | 120.0° | 120.0° |
| C6 | C5 | H5 | 121.2° | 120.5° |
| C5 | C6 | H6 | 119.0° | 120.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 123.3° | 120.0° |
| OP3 | P | OP1 | O5' | 117.3° | 120.0° |
| OP3 | P | OP2 | O5' | 114.4° | 120.0° |
| OP3 | P | OP2 | HOP2 | 124.4° | 60.0° |
| OP3 | P | O5' | C5' | 74.7° | 175.0° |
| HOP3 | OP3 | P | OP1 | 0.0° | 60.0° |
| HOP3 | OP3 | P | OP2 | 131.1° | 60.0° |
| HOP3 | OP3 | P | O5' | 117.1° | 180.0° |
| OP1 | P | OP2 | O5' | 121.2° | 120.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
| OP1 | P | O5' | C5' | 43.0° | 55.0° |
| OP2 | P | O5' | C5' | 172.0° | 65.0° |
| O5' | P | OP2 | HOP2 | 121.2° | 60.0° |
| P | O5' | C5' | C4' | 168.9° | 180.0° |
| P | O5' | C5' | H5' | 48.9° | 60.0° |
| P | O5' | C5' | H5'' | 71.1° | 60.0° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'' | 120.0° | 120.0° |
| O5' | C5' | H5' | H5'' | 119.1° | 120.0° |
| O5' | C5' | C4' | O4' | 57.8° | 66.5° |
| O5' | C5' | C4' | C3' | 62.3° | 178.1° |
| O5' | C5' | C4' | H4' | 179.4° | 55.8° |
| C4' | C5' | H5' | H5'' | 119.1° | 120.0° |
| C5' | C4' | O4' | C3' | 127.2° | 118.8° |
| C5' | C4' | O4' | H4' | 113.6° | 122.2° |
| C5' | C4' | C3' | H4' | 113.3° | 122.2° |
| C5' | C4' | O4' | C1' | 150.8° | 159.4° |
| C5' | C4' | C3' | O3' | 71.5° | 98.5° |
| C5' | C4' | C3' | C2' | 167.8° | 142.9° |
| C5' | C4' | C3' | H3' | 45.2° | 24.1° |
| H5' | C5' | C4' | O4' | 62.2° | 173.5° |
| H5' | C5' | C4' | C3' | 177.7° | 58.1° |
| H5' | C5' | C4' | H4' | 59.4° | 64.2° |
| H5'' | C5' | C4' | O4' | 177.8° | 53.5° |
| H5'' | C5' | C4' | C3' | 57.7° | 61.9° |
| H5'' | C5' | C4' | H4' | 60.6° | 175.8° |
| O4' | C4' | C3' | H4' | 122.2° | 118.9° |
| O4' | C4' | C3' | O3' | 163.9° | 142.6° |
| O4' | C4' | C3' | C2' | 43.2° | 24.0° |
| O4' | C4' | C3' | H3' | 79.4° | 94.8° |
| C4' | O4' | C1' | C2' | 6.3° | 40.5° |
| C4' | O4' | C1' | N1 | 113.9° | 159.4° |
| C4' | O4' | C1' | H1' | 127.1° | 78.3° |
| C3' | C4' | O4' | C1' | 23.6° | 40.5° |
| C4' | C3' | O3' | C2' | 110.8° | 114.6° |
| C4' | C3' | O3' | H3' | 125.6° | 122.6° |
| C4' | C3' | C2' | H3' | 124.9° | 118.7° |
| C4' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C4' | C3' | C2' | O2' | 74.2° | 118.6° |
| C4' | C3' | C2' | C1' | 45.3° | 0.0° |
| C4' | C3' | C2' | H2' | 168.9° | 118.8° |
| H4' | C4' | O4' | C1' | 95.6° | 78.4° |
| H4' | C4' | C3' | O3' | 41.8° | 23.7° |
| H4' | C4' | C3' | C2' | 78.9° | 94.9° |
| H4' | C4' | C3' | H3' | 158.5° | 146.3° |
| O4' | C1' | C2' | C3' | 33.2° | 24.0° |
| O4' | C1' | C2' | O2' | 86.7° | 142.6° |
| O4' | C1' | C2' | N1 | 119.6° | 118.8° |
| O4' | C1' | C2' | H1' | 121.3° | 118.8° |
| O4' | C1' | C2' | H2' | 156.4° | 94.7° |
| O4' | C1' | N1 | H1' | 121.4° | 122.3° |
| O4' | C1' | N1 | C2 | 165.9° | 178.5° |
| O4' | C1' | N1 | C6 | 14.4° | 1.2° |
| O3' | C3' | C2' | H3' | 116.9° | 122.7° |
| O3' | C3' | C2' | O2' | 44.0° | 0.0° |
| O3' | C3' | C2' | C1' | 163.4° | 118.7° |
| O3' | C3' | C2' | H2' | 72.9° | 122.6° |
| C2' | C3' | O3' | HO3' | 69.2° | 65.4° |
| C3' | C2' | O2' | C1' | 112.0° | 114.7° |
| C3' | C2' | O2' | H2' | 123.8° | 122.6° |
| C3' | C2' | C1' | H2' | 123.2° | 118.7° |
| C3' | C2' | O2' | HO2' | 180.0° | 61.4° |
| C3' | C2' | C1' | N1 | 86.4° | 142.8° |
| C3' | C2' | C1' | H1' | 154.5° | 94.9° |
| H3' | C3' | O3' | HO3' | 54.4° | 57.4° |
| H3' | C3' | C2' | O2' | 160.9° | 122.7° |
| H3' | C3' | C2' | C1' | 79.6° | 118.7° |
| H3' | C3' | C2' | H2' | 44.0° | 0.1° |
| O2' | C2' | C1' | H2' | 116.9° | 122.6° |
| O2' | C2' | C1' | N1 | 153.7° | 98.5° |
| O2' | C2' | C1' | H1' | 34.6° | 23.8° |
| C1' | C2' | O2' | HO2' | 68.1° | 176.1° |
| C2' | C1' | N1 | H1' | 120.8° | 122.3° |
| C2' | C1' | N1 | C2 | 76.3° | 63.2° |
| C2' | C1' | N1 | C6 | 103.3° | 116.5° |
| H2' | C2' | O2' | HO2' | 56.2° | 61.2° |
| H2' | C2' | C1' | N1 | 36.7° | 24.1° |
| H2' | C2' | C1' | H1' | 82.3° | 146.4° |
| C1' | N1 | C2 | C6 | 179.7° | 179.7° |
| C1' | N1 | C2 | O2 | 0.1° | 0.0° |
| C1' | N1 | C2 | N3 | 179.3° | 179.9° |
| C1' | N1 | C6 | C5 | 179.9° | 179.7° |
| C1' | N1 | C6 | H6 | 0.1° | 0.0° |
| H1' | C1' | N1 | C2 | 44.5° | 59.1° |
| H1' | C1' | N1 | C6 | 135.8° | 121.2° |
| N1 | C2 | O2 | N3 | 179.3° | 179.9° |
| N1 | C2 | N3 | C4 | 1.2° | 0.1° |
| C2 | N1 | C6 | C5 | 0.5° | 0.6° |
| C2 | N1 | C6 | H6 | 179.6° | 179.7° |
| C6 | N1 | C2 | O2 | 179.7° | 179.7° |
| C6 | N1 | C2 | N3 | 0.4° | 0.2° |
| N1 | C6 | C5 | C4 | 0.5° | 0.6° |
| N1 | C6 | C5 | H6 | 180.0° | 179.7° |
| N1 | C6 | C5 | H5 | 179.4° | 179.7° |
| O2 | C2 | N3 | C4 | 179.5° | 180.0° |
| C2 | N3 | C4 | N4 | 179.6° | 180.0° |
| C2 | N3 | C4 | C5 | 1.1° | 0.1° |
| N3 | C4 | N4 | C5 | 179.3° | 179.9° |
| N3 | C4 | N4 | H41 | 0.0° | 0.0° |
| N3 | C4 | N4 | H42 | 180.0° | 180.0° |
| N3 | C4 | C5 | C6 | 0.2° | 0.3° |
| N3 | C4 | C5 | H5 | 179.8° | 180.0° |
| C4 | N4 | H41 | H42 | 180.0° | 180.0° |
| N4 | C4 | C5 | C6 | 179.5° | 179.7° |
| N4 | C4 | C5 | H5 | 0.5° | 0.1° |
| C5 | C4 | N4 | H41 | 179.3° | 180.0° |
| C5 | C4 | N4 | H42 | 0.7° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 179.7° |
| C4 | C5 | C6 | H6 | 179.5° | 179.7° |
| H5 | C5 | C6 | H6 | 0.6° | 0.0° |
