0AY
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CA | sing | 1.47Å | 1.46Å | |
N | H1N | sing | 1.01Å | 1.00Å | |
N | H2N | sing | 1.01Å | 1.00Å | |
CA | B | sing | 1.57Å | 1.64Å | |
CA | HA | sing | 1.09Å | 1.10Å | |
CB | CA | sing | 1.53Å | 1.52Å | |
CB | H1B | sing | 1.09Å | 1.10Å | |
CB | H2B | sing | 1.09Å | 1.10Å | |
CG | CB | sing | 1.53Å | 1.51Å | |
CG | H1G | sing | 1.09Å | 1.10Å | |
CG | H2G | sing | 1.09Å | 1.10Å | |
CD | CG | sing | 1.53Å | 1.50Å | |
CD | H1D | sing | 1.09Å | 1.10Å | |
CD | H2D | sing | 1.09Å | 1.10Å | |
CE | CD | sing | 1.53Å | 1.50Å | |
CE | H1E | sing | 1.09Å | 1.10Å | |
CE | H2E | sing | 1.09Å | 1.10Å | |
NZ | CE | sing | 1.47Å | 1.44Å | |
NZ | H1NZ | sing | 1.01Å | 1.00Å | |
NZ | H2NZ | sing | 1.01Å | 1.00Å | |
B | O | sing | 1.42Å | 1.47Å | |
B | OXT | sing | 1.42Å | 1.50Å | |
OXT | C1 | sing | 1.43Å | 1.46Å | |
C1 | C2 | sing | 1.53Å | 1.51Å | |
C1 | H11 | sing | 1.09Å | 1.10Å | |
C1 | H21 | sing | 1.09Å | 1.10Å | |
C2 | H12 | sing | 1.09Å | 1.10Å | |
C2 | H22 | sing | 1.09Å | 1.10Å | |
C2 | H32 | sing | 1.09Å | 1.10Å | |
O | C3 | sing | 1.43Å | 1.44Å | |
C3 | H13 | sing | 1.09Å | 1.10Å | |
C3 | H23 | sing | 1.09Å | 1.10Å | |
C5 | C3 | sing | 1.53Å | 1.54Å | |
C5 | H15 | sing | 1.09Å | 1.10Å | |
C5 | H25 | sing | 1.09Å | 1.10Å | |
C5 | H35 | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CA | N | H1N | 109.5° | 111.0° |
CA | N | H2N | 109.5° | 111.0° |
N | CA | B | 100.7° | 109.5° |
N | CA | HA | 117.0° | 109.5° |
N | CA | CB | 108.2° | 109.5° |
H1N | N | H2N | 109.5° | 111.0° |
B | CA | HA | 112.5° | 109.4° |
B | CA | CB | 113.0° | 109.5° |
CA | B | O | 116.0° | 120.0° |
CA | B | OXT | 118.6° | 120.0° |
HA | CA | CB | 105.5° | 109.5° |
CA | CB | H1B | 109.7° | 109.4° |
CA | CB | H2B | 109.7° | 109.5° |
CA | CB | CG | 108.8° | 109.5° |
H1B | CB | H2B | 109.3° | 109.5° |
H1B | CB | CG | 109.7° | 109.5° |
H2B | CB | CG | 109.7° | 109.5° |
CB | CG | H1G | 109.2° | 109.4° |
CB | CG | H2G | 109.3° | 109.5° |
CB | CG | CD | 110.1° | 109.5° |
H1G | CG | H2G | 109.7° | 109.4° |
H1G | CG | CD | 109.3° | 109.5° |
H2G | CG | CD | 109.2° | 109.5° |
CG | CD | H1D | 110.8° | 109.4° |
CG | CD | H2D | 110.9° | 109.5° |
CG | CD | CE | 105.4° | 109.5° |
H1D | CD | H2D | 108.1° | 109.5° |
H1D | CD | CE | 110.8° | 109.5° |
H2D | CD | CE | 110.8° | 109.4° |
CD | CE | H1E | 109.1° | 109.5° |
CD | CE | H2E | 109.1° | 109.4° |
CD | CE | NZ | 110.7° | 109.5° |
H1E | CE | H2E | 109.9° | 109.4° |
H1E | CE | NZ | 109.1° | 109.5° |
H2E | CE | NZ | 109.1° | 109.5° |
CE | NZ | H1NZ | 109.5° | 111.0° |
CE | NZ | H2NZ | 109.5° | 111.0° |
H1NZ | NZ | H2NZ | 109.5° | 110.9° |
O | B | OXT | 111.0° | 120.0° |
B | O | C3 | 138.9° | 114.1° |
B | OXT | C1 | 129.8° | 114.0° |
OXT | C1 | C2 | 122.1° | 109.5° |
OXT | C1 | H11 | 105.4° | 109.4° |
OXT | C1 | H21 | 105.4° | 109.5° |
C2 | C1 | H11 | 105.5° | 109.4° |
C2 | C1 | H21 | 105.5° | 109.5° |
C1 | C2 | H12 | 109.5° | 109.5° |
C1 | C2 | H22 | 109.5° | 109.5° |
C1 | C2 | H32 | 109.4° | 109.4° |
H11 | C1 | H21 | 113.2° | 109.5° |
H12 | C2 | H22 | 109.4° | 109.5° |
H12 | C2 | H32 | 109.5° | 109.5° |
H22 | C2 | H32 | 109.5° | 109.4° |
O | C3 | H13 | 106.6° | 109.5° |
O | C3 | H23 | 106.6° | 109.4° |
O | C3 | C5 | 118.5° | 109.5° |
H13 | C3 | H23 | 112.2° | 109.5° |
H13 | C3 | C5 | 106.6° | 109.5° |
H23 | C3 | C5 | 106.6° | 109.5° |
C3 | C5 | H15 | 109.5° | 109.5° |
C3 | C5 | H25 | 109.5° | 109.5° |
C3 | C5 | H35 | 109.5° | 109.5° |
H15 | C5 | H25 | 109.4° | 109.5° |
H15 | C5 | H35 | 109.5° | 109.4° |
H25 | C5 | H35 | 109.5° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CA | N | H1N | H2N | 120.0° | 124.0° |
N | CA | B | HA | 125.3° | 120.0° |
N | CA | B | CB | 115.2° | 120.0° |
N | CA | HA | CB | 120.4° | 120.0° |
N | CA | CB | H1B | 44.8° | 60.0° |
N | CA | CB | H2B | 164.8° | 60.0° |
N | CA | CB | CG | 75.2° | 180.0° |
N | CA | B | O | 38.0° | 120.0° |
N | CA | B | OXT | 174.2° | 60.0° |
H1N | N | CA | B | 180.0° | 60.0° |
H1N | N | CA | HA | 57.7° | 180.0° |
H1N | N | CA | CB | 61.2° | 60.0° |
H2N | N | CA | B | 60.0° | 176.1° |
H2N | N | CA | HA | 62.3° | 56.1° |
H2N | N | CA | CB | 178.7° | 63.9° |
B | CA | HA | CB | 123.7° | 120.0° |
B | CA | CB | H1B | 65.8° | 180.0° |
B | CA | CB | H2B | 54.2° | 60.0° |
B | CA | CB | CG | 174.2° | 60.0° |
CA | B | O | OXT | 139.4° | 179.9° |
CA | B | OXT | C1 | 141.5° | 95.1° |
CA | B | O | C3 | 71.4° | 114.9° |
HA | CA | CB | H1B | 170.8° | 60.0° |
HA | CA | CB | H2B | 69.2° | 180.0° |
HA | CA | CB | CG | 50.8° | 59.9° |
HA | CA | B | O | 87.3° | 120.1° |
HA | CA | B | OXT | 48.8° | 60.0° |
CA | CB | H1B | H2B | 120.2° | 120.0° |
CA | CB | H1B | CG | 119.4° | 120.0° |
CA | CB | H2B | CG | 119.5° | 120.0° |
CA | CB | CG | H1G | 64.5° | 60.0° |
CA | CB | CG | H2G | 55.5° | 59.9° |
CA | CB | CG | CD | 175.4° | 180.0° |
CB | CA | B | O | 153.2° | 0.0° |
CB | CA | B | OXT | 70.6° | 180.0° |
H1B | CB | H2B | CG | 120.3° | 120.0° |
H1B | CB | CG | H1G | 175.5° | 180.0° |
H1B | CB | CG | H2G | 64.5° | 60.0° |
H1B | CB | CG | CD | 55.5° | 60.0° |
H2B | CB | CG | H1G | 55.5° | 60.0° |
H2B | CB | CG | H2G | 175.5° | 179.9° |
H2B | CB | CG | CD | 64.6° | 60.0° |
CB | CG | H1G | H2G | 119.7° | 120.0° |
CB | CG | H1G | CD | 120.5° | 120.0° |
CB | CG | H2G | CD | 120.5° | 120.0° |
CB | CG | CD | H1D | 62.8° | 60.0° |
CB | CG | CD | H2D | 57.1° | 60.0° |
CB | CG | CD | CE | 177.2° | 180.0° |
H1G | CG | H2G | CD | 119.8° | 120.0° |
H1G | CG | CD | H1D | 177.2° | 180.0° |
H1G | CG | CD | H2D | 62.8° | 59.9° |
H1G | CG | CD | CE | 57.2° | 60.0° |
H2G | CG | CD | H1D | 57.1° | 60.0° |
H2G | CG | CD | H2D | 177.1° | 179.9° |
H2G | CG | CD | CE | 62.8° | 60.0° |
CG | CD | H1D | H2D | 121.7° | 120.0° |
CG | CD | H1D | CE | 116.7° | 120.0° |
CG | CD | H2D | CE | 116.7° | 120.0° |
CG | CD | CE | H1E | 64.8° | 60.0° |
CG | CD | CE | H2E | 55.2° | 60.0° |
CG | CD | CE | NZ | 175.2° | 180.0° |
H1D | CD | H2D | CE | 121.6° | 120.0° |
H1D | CD | CE | H1E | 175.2° | 180.0° |
H1D | CD | CE | H2E | 64.7° | 60.0° |
H1D | CD | CE | NZ | 55.2° | 60.0° |
H2D | CD | CE | H1E | 55.2° | 60.0° |
H2D | CD | CE | H2E | 175.3° | 179.9° |
H2D | CD | CE | NZ | 64.8° | 60.1° |
CD | CE | H1E | H2E | 119.5° | 120.0° |
CD | CE | H1E | NZ | 121.0° | 120.0° |
CD | CE | H2E | NZ | 121.0° | 120.0° |
CD | CE | NZ | H1NZ | 180.0° | 180.0° |
CD | CE | NZ | H2NZ | 60.0° | 56.1° |
H1E | CE | H2E | NZ | 119.5° | 120.1° |
H1E | CE | NZ | H1NZ | 60.0° | 60.0° |
H1E | CE | NZ | H2NZ | 180.0° | 176.1° |
H2E | CE | NZ | H1NZ | 60.0° | 60.0° |
H2E | CE | NZ | H2NZ | 60.0° | 63.9° |
CE | NZ | H1NZ | H2NZ | 120.0° | 123.9° |
O | B | OXT | C1 | 3.3° | 85.0° |
B | O | C3 | H13 | 109.4° | 64.9° |
B | O | C3 | H23 | 130.5° | 55.0° |
B | O | C3 | C5 | 10.5° | 175.0° |
B | OXT | C1 | C2 | 51.4° | 175.0° |
B | OXT | C1 | H11 | 68.5° | 55.1° |
B | OXT | C1 | H21 | 171.4° | 64.9° |
OXT | B | O | C3 | 68.0° | 65.1° |
OXT | C1 | C2 | H11 | 120.0° | 119.9° |
OXT | C1 | C2 | H21 | 120.0° | 120.0° |
OXT | C1 | H11 | H21 | 114.8° | 120.0° |
OXT | C1 | C2 | H12 | 180.0° | 60.0° |
OXT | C1 | C2 | H22 | 60.0° | 180.0° |
OXT | C1 | C2 | H32 | 60.0° | 60.1° |
C2 | C1 | H11 | H21 | 114.8° | 120.0° |
C1 | C2 | H12 | H22 | 120.0° | 120.0° |
C1 | C2 | H12 | H32 | 120.0° | 120.0° |
C1 | C2 | H22 | H32 | 120.0° | 119.9° |
H11 | C1 | C2 | H12 | 60.0° | 60.0° |
H11 | C1 | C2 | H22 | 180.0° | 60.0° |
H11 | C1 | C2 | H32 | 60.0° | 180.0° |
H21 | C1 | C2 | H12 | 60.0° | 180.0° |
H21 | C1 | C2 | H22 | 60.0° | 60.0° |
H21 | C1 | C2 | H32 | 180.0° | 60.0° |
H12 | C2 | H22 | H32 | 120.0° | 120.0° |
O | C3 | H13 | H23 | 116.3° | 119.9° |
O | C3 | H13 | C5 | 127.4° | 120.0° |
O | C3 | H23 | C5 | 127.4° | 120.0° |
O | C3 | C5 | H15 | 180.0° | 60.0° |
O | C3 | C5 | H25 | 60.0° | 60.1° |
O | C3 | C5 | H35 | 60.0° | 180.0° |
H13 | C3 | H23 | C5 | 116.3° | 120.1° |
H13 | C3 | C5 | H15 | 60.0° | 180.0° |
H13 | C3 | C5 | H25 | 180.0° | 60.0° |
H13 | C3 | C5 | H35 | 60.0° | 60.0° |
H23 | C3 | C5 | H15 | 60.0° | 60.0° |
H23 | C3 | C5 | H25 | 60.0° | 180.0° |
H23 | C3 | C5 | H35 | 180.0° | 60.1° |
C3 | C5 | H15 | H25 | 120.0° | 120.0° |
C3 | C5 | H15 | H35 | 120.0° | 120.0° |
C3 | C5 | H25 | H35 | 120.0° | 120.0° |
H15 | C5 | H25 | H35 | 120.0° | 119.9° |