0AD
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | sing | 1.61Å | 1.48Å | |
| P | OP2 | doub | 1.48Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.61Å | |
| P | OP3 | sing | 1.61Å | 1.63Å | |
| OP1 | HP1 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.48Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C3' | O3' | sing | 1.43Å | 1.45Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HA | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.54Å | 1.48Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| C1' | N9 | sing | 1.47Å | 1.44Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N9 | C8 | sing | 1.36Å | 1.33Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.30Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| N7 | C5 | sing | 1.36Å | 1.40Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.41Å | |
| C5 | C4 | doub | 1.40Å | 1.37Å | Aromatic |
| C6 | O6 | doub | 1.22Å | 1.22Å | |
| C6 | N1 | sing | 1.35Å | 1.41Å | |
| N1 | C2 | sing | 1.36Å | 1.40Å | |
| N1 | H1 | sing | 0.97Å | 1.00Å | |
| C2 | N2 | sing | 1.37Å | 1.36Å | |
| C2 | N3 | doub | 1.31Å | 1.33Å | |
| N2 | C4A | sing | 1.47Å | 1.47Å | |
| N2 | H2 | sing | 0.97Å | 1.00Å | |
| C4A | C5A | sing | 1.53Å | 1.54Å | |
| C4A | H4A1 | sing | 1.09Å | 1.10Å | |
| C4A | H4A2 | sing | 1.09Å | 1.10Å | |
| C5A | C6A | sing | 1.53Å | 1.50Å | |
| C5A | H5A1 | sing | 1.09Å | 1.10Å | |
| C5A | H5A2 | sing | 1.09Å | 1.10Å | |
| C4 | N3 | sing | 1.34Å | 1.35Å | |
| C6A | H17 | sing | 1.09Å | 1.10Å | |
| C6A | H18 | sing | 1.09Å | 1.10Å | |
| C6A | H19 | sing | 1.09Å | 1.10Å | |
| OP3 | H20 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 118.6° | 109.5° |
| OP1 | P | O5' | 107.0° | 109.5° |
| OP1 | P | OP3 | 107.0° | 109.5° |
| P | OP1 | HP1 | 109.5° | 114.0° |
| OP2 | P | O5' | 108.4° | 109.4° |
| OP2 | P | OP3 | 109.9° | 109.5° |
| O5' | P | OP3 | 105.1° | 109.5° |
| P | O5' | C5' | 118.8° | 123.0° |
| P | OP3 | H20 | 109.5° | 114.0° |
| O5' | C5' | C4' | 110.6° | 109.5° |
| O5' | C5' | H5'1 | 109.1° | 109.5° |
| O5' | C5' | H5'2 | 108.8° | 109.5° |
| C4' | C5' | H5'1 | 109.1° | 109.5° |
| C4' | C5' | H5'2 | 108.8° | 109.5° |
| C5' | C4' | O4' | 109.6° | 110.6° |
| C5' | C4' | C3' | 111.0° | 110.6° |
| C5' | C4' | H4' | 107.9° | 110.5° |
| H5'1 | C5' | H5'2 | 110.4° | 109.5° |
| O4' | C4' | C3' | 108.1° | 103.5° |
| O4' | C4' | H4' | 110.8° | 110.6° |
| C4' | O4' | C1' | 105.2° | 106.9° |
| C3' | C4' | H4' | 109.4° | 110.8° |
| C4' | C3' | O3' | 113.5° | 110.9° |
| C4' | C3' | C2' | 101.0° | 102.1° |
| C4' | C3' | H3' | 113.4° | 110.9° |
| O4' | C1' | C2' | 107.1° | 107.3° |
| O4' | C1' | N9 | 120.9° | 109.9° |
| O4' | C1' | H1' | 104.6° | 109.9° |
| O3' | C3' | C2' | 112.1° | 110.9° |
| O3' | C3' | H3' | 102.6° | 110.8° |
| C3' | O3' | HA | 109.5° | 114.0° |
| C2' | C3' | H3' | 114.8° | 111.0° |
| C3' | C2' | C1' | 101.6° | 104.2° |
| C3' | C2' | H2'1 | 112.2° | 110.5° |
| C3' | C2' | H2'2 | 113.8° | 110.5° |
| C1' | C2' | H2'1 | 112.2° | 110.5° |
| C1' | C2' | H2'2 | 113.8° | 110.5° |
| C2' | C1' | N9 | 113.7° | 109.9° |
| C2' | C1' | H1' | 113.4° | 109.9° |
| H2'1 | C2' | H2'2 | 103.6° | 110.5° |
| N9 | C1' | H1' | 96.4° | 110.0° |
| C1' | N9 | C8 | 130.8° | 126.3° |
| C1' | N9 | C4 | 123.1° | 126.2° |
| C8 | N9 | C4 | 104.3° | 107.5° |
| N9 | C8 | N7 | 117.3° | 109.8° |
| N9 | C8 | H8 | 121.4° | 125.1° |
| N9 | C4 | C5 | 106.5° | 106.1° |
| N9 | C4 | N3 | 125.1° | 134.2° |
| N7 | C8 | H8 | 121.4° | 125.1° |
| C8 | N7 | C5 | 101.6° | 109.3° |
| N7 | C5 | C6 | 130.0° | 134.1° |
| N7 | C5 | C4 | 110.3° | 107.3° |
| C6 | C5 | C4 | 119.7° | 118.6° |
| C5 | C6 | O6 | 127.0° | 120.8° |
| C5 | C6 | N1 | 112.4° | 118.3° |
| C5 | C4 | N3 | 128.3° | 119.7° |
| O6 | C6 | N1 | 120.5° | 120.8° |
| C6 | N1 | C2 | 123.7° | 120.3° |
| C6 | N1 | H1 | 118.2° | 119.8° |
| C2 | N1 | H1 | 118.1° | 119.9° |
| N1 | C2 | N2 | 118.3° | 119.0° |
| N1 | C2 | N3 | 122.8° | 121.9° |
| N2 | C2 | N3 | 118.8° | 119.1° |
| C2 | N2 | C4A | 119.9° | 120.0° |
| C2 | N2 | H2 | 120.1° | 120.0° |
| C2 | N3 | C4 | 113.0° | 121.1° |
| C4A | N2 | H2 | 120.0° | 120.0° |
| N2 | C4A | C5A | 112.6° | 109.5° |
| N2 | C4A | H4A1 | 108.4° | 109.4° |
| N2 | C4A | H4A2 | 107.8° | 109.5° |
| C5A | C4A | H4A1 | 108.4° | 109.5° |
| C5A | C4A | H4A2 | 107.7° | 109.5° |
| C4A | C5A | C6A | 109.2° | 109.5° |
| C4A | C5A | H5A1 | 109.5° | 109.5° |
| C4A | C5A | H5A2 | 109.6° | 109.4° |
| H4A1 | C4A | H4A2 | 111.9° | 109.5° |
| C6A | C5A | H5A1 | 109.6° | 109.5° |
| C6A | C5A | H5A2 | 109.6° | 109.5° |
| C5A | C6A | H17 | 109.5° | 109.4° |
| C5A | C6A | H18 | 109.5° | 109.5° |
| C5A | C6A | H19 | 109.5° | 109.5° |
| H5A1 | C5A | H5A2 | 109.3° | 109.5° |
| H17 | C6A | H18 | 109.4° | 109.5° |
| H17 | C6A | H19 | 109.5° | 109.4° |
| H18 | C6A | H19 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 122.2° | 120.0° |
| OP1 | P | OP2 | OP3 | 123.4° | 120.0° |
| OP1 | P | O5' | OP3 | 113.5° | 120.0° |
| OP1 | P | O5' | C5' | 78.1° | 65.0° |
| OP1 | P | OP3 | H20 | 119.2° | 60.0° |
| OP2 | P | O5' | OP3 | 117.5° | 120.0° |
| OP2 | P | OP1 | HP1 | 53.2° | 180.0° |
| OP2 | P | O5' | C5' | 50.9° | 55.0° |
| OP2 | P | OP3 | H20 | 10.7° | 60.0° |
| O5' | P | OP1 | HP1 | 69.7° | 60.0° |
| P | O5' | C5' | C4' | 94.1° | 180.0° |
| P | O5' | C5' | H5'1 | 25.9° | 60.0° |
| P | O5' | C5' | H5'2 | 146.4° | 60.0° |
| O5' | P | OP3 | H20 | 127.2° | 179.9° |
| OP3 | P | OP1 | HP1 | 178.1° | 60.0° |
| OP3 | P | O5' | C5' | 168.4° | 175.0° |
| O5' | C5' | C4' | H5'1 | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'2 | 119.5° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 119.5° | 120.0° |
| O5' | C5' | C4' | O4' | 29.7° | 66.4° |
| O5' | C5' | C4' | C3' | 149.1° | 179.5° |
| O5' | C5' | C4' | H4' | 91.0° | 56.4° |
| C4' | C5' | H5'1 | H5'2 | 119.5° | 120.0° |
| C5' | C4' | O4' | C3' | 121.2° | 118.5° |
| C5' | C4' | O4' | H4' | 119.0° | 122.8° |
| C5' | C4' | C3' | H4' | 119.0° | 123.0° |
| C5' | C4' | O4' | C1' | 126.6° | 158.6° |
| C5' | C4' | C3' | O3' | 139.0° | 86.3° |
| C5' | C4' | C3' | C2' | 100.9° | 155.5° |
| C5' | C4' | C3' | H3' | 22.5° | 37.2° |
| H5'1 | C5' | C4' | O4' | 90.3° | 53.6° |
| H5'1 | C5' | C4' | C3' | 29.1° | 60.5° |
| H5'1 | C5' | C4' | H4' | 149.0° | 176.4° |
| H5'2 | C5' | C4' | O4' | 149.2° | 173.6° |
| H5'2 | C5' | C4' | C3' | 91.4° | 59.5° |
| H5'2 | C5' | C4' | H4' | 28.5° | 63.6° |
| O4' | C4' | C3' | H4' | 120.7° | 118.6° |
| O4' | C4' | C3' | O3' | 100.7° | 155.2° |
| O4' | C4' | C3' | C2' | 19.4° | 37.0° |
| O4' | C4' | C3' | H3' | 142.8° | 81.3° |
| C4' | O4' | C1' | C2' | 29.6° | 26.5° |
| C4' | O4' | C1' | N9 | 162.1° | 145.9° |
| C4' | O4' | C1' | H1' | 91.1° | 92.9° |
| C3' | C4' | O4' | C1' | 5.4° | 40.1° |
| C4' | C3' | O3' | C2' | 113.6° | 112.7° |
| C4' | C3' | O3' | H3' | 122.7° | 123.6° |
| C4' | C3' | C2' | H3' | 122.4° | 118.2° |
| C4' | C3' | O3' | HA | 13.5° | 180.0° |
| C4' | C3' | C2' | C1' | 35.7° | 20.9° |
| C4' | C3' | C2' | H2'1 | 84.3° | 139.6° |
| C4' | C3' | C2' | H2'2 | 158.5° | 97.8° |
| H4' | C4' | O4' | C1' | 114.5° | 78.6° |
| H4' | C4' | C3' | O3' | 20.0° | 36.7° |
| H4' | C4' | C3' | C2' | 140.2° | 81.5° |
| H4' | C4' | C3' | H3' | 96.5° | 160.2° |
| O4' | C1' | C2' | C3' | 42.1° | 2.0° |
| O4' | C1' | C2' | N9 | 136.2° | 119.4° |
| O4' | C1' | C2' | H1' | 115.0° | 119.5° |
| O4' | C1' | C2' | H2'1 | 77.9° | 116.7° |
| O4' | C1' | C2' | H2'2 | 164.8° | 120.7° |
| O4' | C1' | N9 | H1' | 111.3° | 121.1° |
| O4' | C1' | N9 | C8 | 100.7° | 23.6° |
| O4' | C1' | N9 | C4 | 96.9° | 156.7° |
| O3' | C3' | C2' | H3' | 116.5° | 123.6° |
| O3' | C3' | C2' | C1' | 85.4° | 139.1° |
| O3' | C3' | C2' | H2'1 | 154.6° | 102.3° |
| O3' | C3' | C2' | H2'2 | 37.3° | 20.4° |
| C2' | C3' | O3' | HA | 100.1° | 67.3° |
| C3' | C2' | C1' | H2'1 | 120.0° | 118.7° |
| C3' | C2' | C1' | H2'2 | 122.8° | 118.7° |
| C3' | C2' | H2'1 | H2'2 | 123.2° | 122.6° |
| C3' | C2' | C1' | N9 | 178.3° | 121.5° |
| C3' | C2' | C1' | H1' | 72.9° | 117.4° |
| H3' | C3' | O3' | HA | 136.2° | 56.4° |
| H3' | C3' | C2' | C1' | 158.0° | 97.4° |
| H3' | C3' | C2' | H2'1 | 38.0° | 21.3° |
| H3' | C3' | C2' | H2'2 | 79.2° | 143.9° |
| C1' | C2' | H2'1 | H2'2 | 123.2° | 122.6° |
| C2' | C1' | N9 | H1' | 119.1° | 121.1° |
| C2' | C1' | N9 | C8 | 28.9° | 94.2° |
| C2' | C1' | N9 | C4 | 133.5° | 85.4° |
| H2'1 | C2' | C1' | N9 | 58.3° | 2.8° |
| H2'1 | C2' | C1' | H1' | 167.1° | 123.9° |
| H2'2 | C2' | C1' | N9 | 58.9° | 119.8° |
| H2'2 | C2' | C1' | H1' | 49.9° | 1.3° |
| C1' | N9 | C8 | C4 | 164.9° | 179.7° |
| C1' | N9 | C8 | N7 | 167.0° | 179.9° |
| C1' | N9 | C8 | H8 | 12.9° | 0.1° |
| C1' | N9 | C4 | C5 | 167.6° | 179.9° |
| C1' | N9 | C4 | N3 | 10.8° | 0.7° |
| H1' | C1' | N9 | C8 | 148.0° | 144.7° |
| H1' | C1' | N9 | C4 | 14.4° | 35.6° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C8 | N7 | C5 | 2.0° | 0.0° |
| C8 | N9 | C4 | C5 | 1.3° | 0.4° |
| C8 | N9 | C4 | N3 | 177.1° | 179.6° |
| C4 | N9 | C8 | N7 | 2.2° | 0.2° |
| C4 | N9 | C8 | H8 | 177.8° | 179.8° |
| N9 | C4 | C5 | N7 | 0.2° | 0.4° |
| N9 | C4 | C5 | C6 | 179.0° | 179.8° |
| N9 | C4 | C5 | N3 | 178.4° | 179.3° |
| N9 | C4 | N3 | C2 | 176.8° | 179.7° |
| C8 | N7 | C5 | C6 | 177.7° | 180.0° |
| C8 | N7 | C5 | C4 | 1.0° | 0.2° |
| H8 | C8 | N7 | C5 | 178.0° | 180.0° |
| N7 | C5 | C6 | C4 | 178.5° | 179.7° |
| N7 | C5 | C6 | O6 | 7.4° | 0.0° |
| N7 | C5 | C6 | N1 | 176.8° | 179.9° |
| N7 | C5 | C4 | N3 | 178.1° | 179.7° |
| C5 | C6 | O6 | N1 | 175.4° | 179.9° |
| C5 | C6 | N1 | C2 | 0.9° | 0.1° |
| C5 | C6 | N1 | H1 | 179.0° | 179.9° |
| C6 | C5 | C4 | N3 | 0.7° | 0.5° |
| C4 | C5 | C6 | O6 | 174.1° | 179.7° |
| C4 | C5 | C6 | N1 | 1.7° | 0.2° |
| C5 | C4 | N3 | C2 | 1.2° | 0.5° |
| O6 | C6 | N1 | C2 | 175.1° | 179.9° |
| O6 | C6 | N1 | H1 | 4.9° | 0.2° |
| C6 | N1 | C2 | H1 | 180.0° | 179.9° |
| C6 | N1 | C2 | N2 | 177.3° | 179.9° |
| C6 | N1 | C2 | N3 | 1.0° | 0.0° |
| N1 | C2 | N2 | N3 | 178.4° | 180.0° |
| N1 | C2 | N2 | C4A | 0.4° | 180.0° |
| N1 | C2 | N2 | H2 | 179.6° | 0.1° |
| N1 | C2 | N3 | C4 | 2.0° | 0.3° |
| H1 | N1 | C2 | N2 | 2.7° | 0.1° |
| H1 | N1 | C2 | N3 | 179.0° | 179.9° |
| C2 | N2 | C4A | H2 | 180.0° | 180.0° |
| C2 | N2 | C4A | C5A | 147.0° | 180.0° |
| C2 | N2 | C4A | H4A1 | 27.0° | 60.0° |
| C2 | N2 | C4A | H4A2 | 94.4° | 60.0° |
| N2 | C2 | N3 | C4 | 176.3° | 179.7° |
| N3 | C2 | N2 | C4A | 177.9° | 0.0° |
| N3 | C2 | N2 | H2 | 2.1° | 180.0° |
| N2 | C4A | C5A | H4A1 | 120.0° | 120.0° |
| N2 | C4A | C5A | H4A2 | 118.7° | 120.0° |
| N2 | C4A | H4A1 | H4A2 | 118.8° | 120.0° |
| N2 | C4A | C5A | C6A | 166.4° | 180.0° |
| N2 | C4A | C5A | H5A1 | 73.6° | 60.0° |
| N2 | C4A | C5A | H5A2 | 46.3° | 60.0° |
| H2 | N2 | C4A | C5A | 33.0° | 0.0° |
| H2 | N2 | C4A | H4A1 | 153.0° | 120.0° |
| H2 | N2 | C4A | H4A2 | 85.6° | 120.0° |
| C5A | C4A | H4A1 | H4A2 | 118.7° | 120.0° |
| C4A | C5A | C6A | H5A1 | 120.0° | 120.0° |
| C4A | C5A | C6A | H5A2 | 120.1° | 120.0° |
| C4A | C5A | H5A1 | H5A2 | 120.1° | 120.0° |
| C4A | C5A | C6A | H17 | 54.1° | 60.0° |
| C4A | C5A | C6A | H18 | 174.1° | 60.0° |
| C4A | C5A | C6A | H19 | 65.9° | 179.9° |
| H4A1 | C4A | C5A | C6A | 46.4° | 60.0° |
| H4A1 | C4A | C5A | H5A1 | 166.5° | 180.0° |
| H4A1 | C4A | C5A | H5A2 | 73.7° | 60.0° |
| H4A2 | C4A | C5A | C6A | 74.9° | 60.0° |
| H4A2 | C4A | C5A | H5A1 | 45.1° | 60.0° |
| H4A2 | C4A | C5A | H5A2 | 165.0° | 180.0° |
| C6A | C5A | H5A1 | H5A2 | 120.1° | 120.0° |
| C5A | C6A | H17 | H18 | 120.0° | 120.0° |
| C5A | C6A | H17 | H19 | 120.0° | 120.0° |
| C5A | C6A | H18 | H19 | 120.0° | 120.0° |
| H5A1 | C5A | C6A | H17 | 65.9° | 179.9° |
| H5A1 | C5A | C6A | H18 | 54.1° | 60.0° |
| H5A1 | C5A | C6A | H19 | 174.1° | 60.0° |
| H5A2 | C5A | C6A | H17 | 174.2° | 59.9° |
| H5A2 | C5A | C6A | H18 | 65.8° | 180.0° |
| H5A2 | C5A | C6A | H19 | 54.2° | 60.0° |
| H17 | C6A | H18 | H19 | 120.0° | 120.0° |
