Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

09Z

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.53Å1.55Å
C2C3sing1.53Å1.55Å
C2N4sing1.46Å1.48Å
N4C5sing1.38Å1.39Å
C5N6doub1.30Å1.36ÅAromatic
C5S9sing1.71Å1.70ÅAromatic
N6C7sing1.31Å1.34ÅAromatic
C7C8doub1.38Å1.37ÅAromatic
C7N10sing1.38Å1.29Å
C8S9sing1.76Å1.70ÅAromatic
C8C11sing1.41Å1.51Å
C11C12sing1.48Å1.48Å
C11O18doub1.22Å1.35Å
C12C13doub1.40Å1.46ÅAromatic
C12C17sing1.40Å1.45ÅAromatic
C13C14sing1.38Å1.44ÅAromatic
C14C15doub1.38Å1.42ÅAromatic
C15N16sing1.32Å1.40ÅAromatic
N16C17doub1.32Å1.43ÅAromatic
C1H1sing1.09Å1.10Å
C1H1Asing1.09Å1.10Å
C1H1Bsing1.09Å1.10Å
C2H2sing1.09Å1.10Å
C3H3sing1.09Å1.10Å
C3H3Asing1.09Å1.10Å
C3H3Bsing1.09Å1.10Å
N4HN4sing0.97Å1.00Å
N10HN10sing0.97Å1.00Å
N10HN1Asing0.97Å1.00Å
C13H13sing1.08Å1.08Å
C14H14sing1.08Å1.08Å
C15H15sing1.08Å1.08Å
C17H17sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1C2C3109.4°109.5°
C1C2N4107.9°109.5°
C2C1H1109.5°109.4°
C2C1H1A109.5°109.4°
C2C1H1B109.5°109.5°
C1C2H2110.9°109.5°
C3C2N4110.7°109.5°
C3C2H2108.2°109.5°
C2C3H3109.5°109.4°
C2C3H3A109.4°109.5°
C2C3H3B109.5°109.5°
C2N4C5121.5°120.0°
N4C2H2109.7°109.5°
C2N4HN4105.6°120.0°
N4C5N6120.6°124.5°
N4C5S9124.7°124.6°
C5N4HN4105.6°120.0°
N6C5S9114.7°110.8°
C5N6C7110.4°117.3°
C5S9C888.7°90.6°
N6C7C8114.2°113.6°
N6C7N10121.9°123.2°
C8C7N10123.9°123.3°
C7C8S9112.0°107.7°
C7C8C11124.3°126.1°
C7N10HN10109.5°120.0°
C7N10HN1A109.5°120.0°
S9C8C11123.7°126.2°
C8C11C12123.7°120.0°
C8C11O18118.1°120.0°
C12C11O18118.2°120.0°
C11C12C13119.7°120.5°
C11C12C17121.9°120.6°
C13C12C17118.4°118.9°
C12C13C14121.3°118.3°
C12C13H13119.3°120.8°
C12C17N16118.3°120.6°
C12C17H17120.9°119.7°
C13C14C15118.8°119.3°
C14C13H13119.4°120.9°
C13C14H14120.6°120.4°
C14C15N16119.9°121.1°
C15C14H14120.6°120.3°
C14C15H15120.0°119.5°
C15N16C17123.3°121.9°
N16C15H15120.0°119.5°
N16C17H17120.8°119.8°
H1C1H1A109.4°109.5°
H1C1H1B109.5°109.5°
H1AC1H1B109.5°109.5°
H3C3H3A109.5°109.5°
H3C3H3B109.4°109.5°
H3AC3H3B109.5°109.5°
HN10N10HN1A109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1C2C3N4118.8°120.0°
C1C2C3H2121.0°120.0°
C1C2N4H2121.0°120.0°
C1C2N4C5164.6°85.0°
C2C1H1H1A120.0°119.9°
C2C1H1H1B120.0°120.0°
C2C1H1AH1B120.0°120.0°
C1C2C3H3180.0°60.0°
C1C2C3H3A60.0°179.9°
C1C2C3H3B60.0°60.0°
C1C2N4HN475.5°95.0°
C3C2N4H2119.3°120.0°
C3C2N4C575.7°155.0°
C3C2C1H1180.0°60.0°
C3C2C1H1A60.0°180.0°
C3C2C1H1B60.0°60.0°
C2C3H3H3A120.0°120.0°
C2C3H3H3B120.0°120.0°
C2C3H3AH3B120.0°120.0°
C3C2N4HN444.3°25.0°
C2N4C5HN4120.0°180.0°
C2N4C5N6166.7°0.0°
C2N4C5S913.2°179.7°
N4C2C1H159.4°180.0°
N4C2C1H1A60.5°60.0°
N4C2C1H1B179.4°60.0°
N4C2C3H361.2°60.0°
N4C2C3H3A178.8°59.9°
N4C2C3H3B58.8°180.0°
N4C5N6S9179.9°179.8°
N4C5N6C7179.8°180.0°
N4C5S9C8179.5°179.9°
C5N4C2H243.6°35.0°
C5N6C7C80.3°0.0°
C5N6C7N10179.6°180.0°
N6C5S9C80.4°0.3°
N6C5N4HN446.7°180.0°
S9C5N6C70.1°0.3°
C5S9C8C70.5°0.3°
C5S9C8C11179.3°179.9°
S9C5N4HN4133.2°0.3°
N6C7C8N10179.2°179.9°
N6C7C8S90.6°0.2°
N6C7C8C11179.2°180.0°
N6C7N10HN100.0°0.1°
N6C7N10HN1A120.0°180.0°
C7C8S9C11179.8°179.8°
C7C8C11C12177.7°173.4°
C7C8C11O181.0°6.5°
C8C7N10HN10179.1°180.0°
C8C7N10HN1A60.9°0.1°
N10C7C8S9179.8°179.7°
N10C7C8C110.0°0.1°
C7N10HN10HN1A120.0°179.9°
S9C8C11C122.1°6.4°
S9C8C11O18179.2°173.7°
C8C11C12O18178.7°180.0°
C8C11C12C1346.3°26.3°
C8C11C12C17134.7°153.4°
C11C12C13C17179.0°179.6°
C11C12C13C14179.6°180.0°
C11C12C17N16179.5°179.8°
C11C12C13H130.4°0.1°
C11C12C17H170.5°0.1°
O18C11C12C13132.4°153.7°
O18C11C12C1746.6°26.7°
C12C13C14H13180.0°179.9°
C12C13C14C150.2°0.0°
C13C12C17N160.5°0.6°
C12C13C14H14179.8°180.0°
C13C12C17H17179.4°179.8°
C17C12C13C140.6°0.3°
C12C17N16C150.2°0.6°
C12C17N16H17180.0°179.7°
C17C12C13H13179.4°179.8°
C13C14C15H14180.0°180.0°
C13C14C15N160.1°0.0°
C13C14C15H15179.8°180.0°
C14C15N16H15180.0°180.0°
C14C15N16C170.2°0.3°
C15C14C13H13179.8°180.0°
N16C15C14H14179.8°180.0°
C15N16C17H17179.8°179.8°
C17N16C15H15179.8°179.7°
H1C1H1AH1B120.0°120.1°
H1C1C2H260.7°60.0°
H1AC1C2H2179.3°60.0°
H1BC1C2H259.3°180.0°
H2C2C3H359.0°180.0°
H2C2C3H3A61.0°60.1°
H2C2C3H3B179.0°60.0°
H2C2N4HN4163.6°145.1°
H3C3H3AH3B120.0°120.0°
H13C13C14H140.2°0.1°
H14C14C15H150.2°0.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon