Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryGeometryRelated PDB entries

08H

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CAECACdoub1.38Å1.38ÅAromatic
CAECAGsing1.38Å1.39ÅAromatic
CACCADsing1.38Å1.39ÅAromatic
CAGCAQdoub1.40Å1.39ÅAromatic
CADCAFdoub1.38Å1.40ÅAromatic
CAQCAFsing1.40Å1.39ÅAromatic
CAQCAOsing1.48Å1.44Å
NALCAOdoub1.29Å1.35Å
NALCAKsing1.47Å1.49Å
CAOCASsing1.47Å1.43Å
CAKCATsing1.51Å1.50Å
CASCAJdoub1.40Å1.40ÅAromatic
CASCAUsing1.40Å1.40ÅAromatic
CAJCAPsing1.38Å1.39ÅAromatic
CATNANdoub1.30Å1.35ÅAromatic
CATNAVsing1.36Å1.34ÅAromatic
NANNAMsing1.29Å1.28ÅAromatic
NAVCAUsing1.40Å1.39Å
NAVCARsing1.36Å1.36ÅAromatic
CAUCAIdoub1.39Å1.39ÅAromatic
CAPCLABsing1.74Å1.74Å
CAPCAHdoub1.39Å1.40ÅAromatic
NAMCARdoub1.31Å1.34ÅAromatic
CARCAAsing1.51Å1.54Å
CAICAHsing1.38Å1.41ÅAromatic
CAJH1sing1.08Å1.08Å
CAHH2sing1.08Å1.08Å
CAIH3sing1.08Å1.08Å
CAAH4sing1.09Å1.10Å
CAAH5sing1.09Å1.10Å
CAAH6sing1.09Å1.10Å
CAKH7sing1.09Å1.10Å
CAKH8sing1.09Å1.10Å
CAFH12sing1.08Å1.08Å
CADH13sing1.08Å1.08Å
CACH14sing1.08Å1.08Å
CAEH15sing1.08Å1.08Å
CAGH16sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CACCAECAG121.4°120.1°
CAECACCAD117.3°120.3°
CAECACH14121.3°119.8°
CACCAEH15119.3°119.9°
CAECAGCAQ122.0°119.9°
CAGCAEH15119.3°119.9°
CAECAGH16119.0°120.1°
CACCADCAF121.1°120.1°
CACCADH13119.5°120.0°
CADCACH14121.3°119.9°
CAGCAQCAF116.4°119.7°
CAGCAQCAO122.4°120.2°
CAQCAGH16119.0°120.0°
CADCAFCAQ121.7°119.9°
CADCAFH12119.1°120.1°
CAFCADH13119.4°119.9°
CAFCAQCAO121.1°120.1°
CAQCAFH12119.1°120.1°
CAQCAONAL115.2°116.1°
CAQCAOCAS121.2°116.1°
CAONALCAK123.1°121.9°
NALCAOCAS121.6°127.9°
NALCAKCAT104.2°107.8°
NALCAKH7111.2°109.8°
NALCAKH8111.2°109.8°
CAOCASCAJ115.9°118.1°
CAOCASCAU125.0°123.1°
CAKCATNAN126.4°127.5°
CAKCATNAV123.6°125.0°
CATCAKH7111.3°109.9°
CATCAKH8111.3°109.8°
CAJCASCAU119.1°118.8°
CASCAJCAP118.1°120.6°
CASCAJH1120.9°119.7°
CASCAUNAV124.2°121.7°
CASCAUCAI122.1°119.9°
CAJCAPCLAB119.9°119.9°
CAJCAPCAH123.4°120.2°
CAPCAJH1121.0°119.7°
NANCATNAV109.8°107.4°
CATNANNAM107.8°109.6°
CATNAVCAU124.1°126.1°
CATNAVCAR104.2°106.0°
NANNAMCAR108.8°109.9°
CAUNAVCAR131.7°127.8°
NAVCAUCAI113.7°118.3°
NAVCARNAM109.4°107.0°
NAVCARCAA128.3°126.5°
CAUCAICAH119.2°120.5°
CAUCAIH3120.4°119.8°
CLABCAPCAH116.6°119.9°
CAPCAHCAI118.0°119.9°
CAPCAHH2121.0°120.0°
NAMCARCAA122.3°126.5°
CARCAAH4109.5°109.5°
CARCAAH5109.4°109.5°
CARCAAH6109.5°109.5°
CAICAHH2121.0°120.0°
CAHCAIH3120.4°119.7°
H4CAAH5109.4°109.4°
H4CAAH6109.5°109.4°
H5CAAH6109.5°109.5°
H7CAKH8107.6°109.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CACCAECAGH15180.0°179.7°
CAECACCADH14180.0°180.0°
CACCAECAGCAQ0.8°0.5°
CAECACCADCAF1.3°0.0°
CAECACCADH13178.7°180.0°
CACCAECAGH16179.1°180.0°
CAGCAECACCAD0.6°0.3°
CAECAGCAQH16180.0°179.5°
CAECAGCAQCAF1.6°0.5°
CAECAGCAQCAO176.9°179.8°
CAGCAECACH14179.4°179.8°
CACCADCAFH13180.0°179.9°
CACCADCAFCAQ2.2°0.0°
CACCADCAFH12177.8°180.0°
CADCACCAEH15179.4°180.0°
CAGCAQCAFCAD2.3°0.3°
CAGCAQCAFCAO178.5°179.7°
CAGCAQCAONAL29.4°154.7°
CAGCAQCAOCAS166.0°25.3°
CAGCAQCAFH12177.8°179.8°
CAQCAGCAEH15179.2°179.7°
CADCAFCAQH12180.0°180.0°
CADCAFCAQCAO176.3°180.0°
CAFCADCACH14178.7°179.9°
CAFCAQCAONAL149.0°25.0°
CAFCAQCAOCAS15.6°155.0°
CAQCAFCADH13177.8°180.0°
CAFCAQCAGH16178.4°180.0°
CAQCAONALCAS164.5°180.0°
CAQCAONALCAK179.9°178.5°
CAQCAOCASCAJ47.6°40.5°
CAQCAOCASCAU130.5°138.0°
CAOCAQCAFH123.7°0.1°
CAOCAQCAGH163.1°0.3°
CAONALCAKCAT73.6°61.4°
NALCAOCASCAJ148.8°139.5°
NALCAOCASCAU33.1°42.0°
CAONALCAKH746.4°58.3°
CAONALCAKH8166.4°179.1°
CAKNALCAOCAS15.3°1.5°
NALCAKCATH7120.0°119.6°
NALCAKCATH8120.0°119.6°
NALCAKCATNAN114.3°119.8°
NALCAKCATNAV61.0°58.4°
NALCAKH7H8122.1°120.8°
CAOCASCAJCAU178.2°178.6°
CAOCASCAJCAP179.8°177.5°
CAOCASCAUNAV2.0°4.9°
CAOCASCAUCAI180.0°176.8°
CAOCASCAJH10.2°2.5°
CAKCATNANNAV175.9°178.5°
CAKCATNANNAM175.3°176.8°
CAKCATNAVCAU5.4°4.5°
CAKCATNAVCAR176.5°176.4°
CATCAKH7H8122.2°120.8°
CASCAJCAPH1180.0°180.0°
CAJCASCAUNAV179.9°176.6°
CAJCASCAUCAI1.9°1.8°
CASCAJCAPCLAB179.9°180.0°
CASCAJCAPCAH1.9°0.0°
CAUCASCAJCAP2.0°1.1°
CASCAUNAVCAT40.9°36.2°
CASCAUNAVCAI178.2°178.4°
CASCAUNAVCAR141.6°144.9°
CASCAUCAICAH1.6°1.2°
CAUCASCAJH1178.0°178.9°
CASCAUCAIH3178.4°178.8°
CAJCAPCLABCAH178.1°180.0°
CAJCAPCAHCAI1.7°0.6°
CAJCAPCAHH2178.3°179.5°
NANCATNAVCAU178.6°177.0°
NANCATNAVCAR0.5°2.1°
CATNANNAMCAR1.5°0.6°
NANCATCAKH7125.7°120.6°
NANCATCAKH85.7°0.2°
NAVCATNANNAM0.6°1.7°
CATNAVCAUCAR177.5°178.9°
CATNAVCAUCAI137.3°142.2°
CATNAVCARNAM1.4°1.7°
CATNAVCARCAA178.9°178.2°
NAVCATCAKH759.0°61.1°
NAVCATCAKH8179.0°178.0°
NANNAMCARNAV1.8°0.8°
NANNAMCARCAA179.5°179.2°
CAUNAVCARNAM179.2°177.3°
CAUNAVCARCAA3.2°2.7°
NAVCAUCAICAH179.8°177.1°
NAVCAUCAIH30.2°2.8°
CARNAVCAUCAI40.2°36.7°
NAVCARNAMCAA177.7°180.0°
NAVCARCAAH4177.2°84.3°
NAVCARCAAH557.2°155.7°
NAVCARCAAH662.7°35.7°
CAUCAICAHCAP1.4°0.1°
CAUCAICAHH3180.0°179.9°
CAUCAICAHH2178.6°179.9°
CLABCAPCAHCAI179.7°179.4°
CLABCAPCAJH10.1°0.0°
CLABCAPCAHH20.3°0.5°
CAPCAHCAIH2180.0°179.9°
CAHCAPCAJH1178.0°180.0°
CAPCAHCAIH3178.6°180.0°
NAMCARCAAH40.0°95.7°
NAMCARCAAH5120.0°24.3°
NAMCARCAAH6120.0°144.3°
CARCAAH4H5120.0°120.0°
CARCAAH4H6120.0°120.0°
CARCAAH5H6120.0°120.0°
H2CAHCAIH31.4°0.0°
H4CAAH5H6120.0°120.0°
H12CAFCADH132.2°0.0°
H13CADCACH141.3°0.0°
H14CACCAEH150.6°0.0°
H15CAECAGH160.9°0.3°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon