07E
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C4' | C3' | sing | 1.53Å | 1.55Å | |
C3' | C2' | sing | 1.53Å | 1.54Å | |
C3' | O' | sing | 1.43Å | 1.40Å | |
C2' | C1' | sing | 1.53Å | 1.54Å | |
C1' | O1 | sing | 1.43Å | 1.46Å | |
O1 | C1 | sing | 1.43Å | 1.45Å | |
C1 | O5 | sing | 1.43Å | 1.42Å | |
C1 | C2 | sing | 1.53Å | 1.55Å | |
O2 | C2 | sing | 1.43Å | 1.42Å | |
O5 | C5 | sing | 1.43Å | 1.44Å | |
C2 | C3 | sing | 1.53Å | 1.54Å | |
C5 | C4 | sing | 1.53Å | 1.55Å | |
C3 | C4 | sing | 1.53Å | 1.54Å | |
C3 | O3 | sing | 1.43Å | 1.40Å | |
C4 | O4 | sing | 1.43Å | 1.43Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
C3 | H3 | sing | 1.09Å | 1.10Å | |
C4 | H4 | sing | 1.09Å | 1.10Å | |
C5 | H51 | sing | 1.09Å | 1.10Å | |
C5 | H52 | sing | 1.09Å | 1.10Å | |
O2 | HO2 | sing | 0.97Å | 0.95Å | |
O3 | HO3 | sing | 0.97Å | 0.95Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å | |
C1' | H10 | sing | 1.09Å | 1.10Å | |
C1' | H11 | sing | 1.09Å | 1.10Å | |
C2' | H12 | sing | 1.09Å | 1.10Å | |
C2' | H13 | sing | 1.09Å | 1.10Å | |
C3' | H14 | sing | 1.09Å | 1.10Å | |
C4' | H15 | sing | 1.09Å | 1.10Å | |
C4' | H16 | sing | 1.09Å | 1.10Å | |
C4' | H17 | sing | 1.09Å | 1.10Å | |
O' | H18 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C4' | C3' | C2' | 115.1° | 109.4° |
C4' | C3' | O' | 109.1° | 109.5° |
C4' | C3' | H14 | 105.1° | 109.5° |
C3' | C4' | H15 | 109.5° | 109.5° |
C3' | C4' | H16 | 109.5° | 109.5° |
C3' | C4' | H17 | 109.5° | 109.5° |
C2' | C3' | O' | 107.3° | 109.4° |
C3' | C2' | C1' | 119.0° | 109.4° |
C3' | C2' | H12 | 106.4° | 109.5° |
C3' | C2' | H13 | 106.4° | 109.5° |
C2' | C3' | H14 | 107.0° | 109.5° |
O' | C3' | H14 | 113.3° | 109.5° |
C3' | O' | H18 | 109.5° | 114.0° |
C2' | C1' | O1 | 114.3° | 109.4° |
C2' | C1' | H10 | 107.9° | 109.5° |
C2' | C1' | H11 | 107.9° | 109.4° |
C1' | C2' | H12 | 106.4° | 109.5° |
C1' | C2' | H13 | 106.4° | 109.4° |
C1' | O1 | C1 | 114.9° | 114.0° |
O1 | C1' | H10 | 107.9° | 109.5° |
O1 | C1' | H11 | 107.9° | 109.5° |
O1 | C1 | O5 | 108.7° | 109.4° |
O1 | C1 | C2 | 113.9° | 109.5° |
O1 | C1 | H1 | 106.4° | 109.5° |
O5 | C1 | C2 | 107.5° | 109.4° |
C1 | O5 | C5 | 115.8° | 114.1° |
O5 | C1 | H1 | 112.9° | 109.4° |
C1 | C2 | O2 | 112.2° | 109.5° |
C1 | C2 | C3 | 108.2° | 109.2° |
C2 | C1 | H1 | 107.6° | 109.5° |
C1 | C2 | H2 | 107.8° | 109.5° |
O2 | C2 | C3 | 107.3° | 109.5° |
O2 | C2 | H2 | 108.6° | 109.6° |
C2 | O2 | HO2 | 109.5° | 114.0° |
O5 | C5 | C4 | 111.2° | 109.4° |
O5 | C5 | H51 | 108.9° | 109.5° |
O5 | C5 | H52 | 108.9° | 109.5° |
C2 | C3 | C4 | 110.6° | 109.0° |
C2 | C3 | O3 | 110.7° | 109.6° |
C3 | C2 | H2 | 112.7° | 109.5° |
C2 | C3 | H3 | 107.8° | 109.5° |
C5 | C4 | C3 | 108.8° | 109.2° |
C5 | C4 | O4 | 110.8° | 109.5° |
C5 | C4 | H4 | 109.3° | 109.6° |
C4 | C5 | H51 | 108.9° | 109.5° |
C4 | C5 | H52 | 108.9° | 109.5° |
C4 | C3 | O3 | 109.2° | 109.6° |
C3 | C4 | O4 | 110.2° | 109.5° |
C4 | C3 | H3 | 109.3° | 109.6° |
C3 | C4 | H4 | 109.9° | 109.5° |
O3 | C3 | H3 | 109.2° | 109.6° |
C3 | O3 | HO3 | 109.5° | 114.0° |
O4 | C4 | H4 | 107.8° | 109.5° |
C4 | O4 | HO4 | 109.5° | 114.0° |
H51 | C5 | H52 | 110.0° | 109.5° |
H10 | C1' | H11 | 111.0° | 109.6° |
H12 | C2' | H13 | 112.3° | 109.5° |
H15 | C4' | H16 | 109.5° | 109.5° |
H15 | C4' | H17 | 109.4° | 109.4° |
H16 | C4' | H17 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C4' | C3' | C2' | O' | 121.6° | 120.0° |
C4' | C3' | C2' | H14 | 116.5° | 120.0° |
C4' | C3' | O' | H14 | 116.8° | 120.1° |
C4' | C3' | C2' | C1' | 62.7° | 175.0° |
C4' | C3' | C2' | H12 | 177.3° | 65.0° |
C4' | C3' | C2' | H13 | 57.3° | 55.1° |
C3' | C4' | H15 | H16 | 120.0° | 120.0° |
C3' | C4' | H15 | H17 | 120.0° | 120.0° |
C3' | C4' | H16 | H17 | 120.0° | 120.0° |
C4' | C3' | O' | H18 | 180.0° | 59.9° |
C2' | C3' | O' | H14 | 117.9° | 120.0° |
C3' | C2' | C1' | H12 | 120.0° | 120.0° |
C3' | C2' | C1' | H13 | 120.0° | 119.9° |
C3' | C2' | C1' | O1 | 81.4° | 180.0° |
C3' | C2' | C1' | H10 | 158.6° | 60.0° |
C3' | C2' | C1' | H11 | 38.6° | 60.1° |
C3' | C2' | H12 | H13 | 116.1° | 120.0° |
C2' | C3' | C4' | H15 | 180.0° | 60.0° |
C2' | C3' | C4' | H16 | 60.0° | 180.0° |
C2' | C3' | C4' | H17 | 60.0° | 60.0° |
C2' | C3' | O' | H18 | 54.6° | 60.0° |
O' | C3' | C2' | C1' | 58.9° | 65.0° |
O' | C3' | C2' | H12 | 61.1° | 55.0° |
O' | C3' | C2' | H13 | 178.9° | 175.0° |
O' | C3' | C4' | H15 | 59.4° | 179.9° |
O' | C3' | C4' | H16 | 60.6° | 60.0° |
O' | C3' | C4' | H17 | 179.3° | 60.0° |
C2' | C1' | O1 | H10 | 120.0° | 120.0° |
C2' | C1' | O1 | H11 | 120.0° | 119.9° |
C2' | C1' | O1 | C1 | 161.7° | 180.0° |
C2' | C1' | H10 | H11 | 118.0° | 120.0° |
C1' | C2' | H12 | H13 | 116.1° | 120.0° |
C1' | C2' | C3' | H14 | 179.2° | 55.0° |
C1' | O1 | C1 | O5 | 100.7° | 65.0° |
C1' | O1 | C1 | C2 | 139.5° | 175.0° |
C1' | O1 | C1 | H1 | 21.2° | 54.9° |
O1 | C1' | H10 | H11 | 118.0° | 120.0° |
O1 | C1' | C2' | H12 | 38.6° | 60.0° |
O1 | C1' | C2' | H13 | 158.6° | 60.0° |
O1 | C1 | O5 | C2 | 123.7° | 120.0° |
O1 | C1 | O5 | H1 | 117.8° | 120.0° |
O1 | C1 | C2 | H1 | 117.6° | 120.1° |
O1 | C1 | C2 | O2 | 61.1° | 62.5° |
O1 | C1 | O5 | C5 | 174.3° | 178.8° |
O1 | C1 | C2 | C3 | 179.4° | 177.6° |
O1 | C1 | C2 | H2 | 58.5° | 57.7° |
C1 | O1 | C1' | H10 | 41.7° | 60.0° |
C1 | O1 | C1' | H11 | 78.3° | 60.1° |
O5 | C1 | C2 | H1 | 121.9° | 120.0° |
O5 | C1 | C2 | O2 | 178.4° | 177.5° |
O5 | C1 | C2 | C3 | 60.1° | 57.6° |
C1 | O5 | C5 | C4 | 58.6° | 61.1° |
O5 | C1 | C2 | H2 | 62.0° | 62.3° |
C1 | O5 | C5 | H51 | 178.6° | 58.8° |
C1 | O5 | C5 | H52 | 61.4° | 178.9° |
C1 | C2 | O2 | C3 | 118.7° | 119.7° |
C1 | C2 | O2 | H2 | 119.1° | 120.2° |
C2 | C1 | O5 | C5 | 62.0° | 61.2° |
C1 | C2 | C3 | H2 | 119.1° | 119.9° |
C1 | C2 | C3 | C4 | 59.2° | 57.0° |
C1 | C2 | C3 | O3 | 179.6° | 176.9° |
C1 | C2 | C3 | H3 | 60.2° | 62.9° |
C1 | C2 | O2 | HO2 | 180.0° | 60.0° |
O2 | C2 | C3 | H2 | 119.6° | 120.1° |
O2 | C2 | C3 | C4 | 179.5° | 176.9° |
O2 | C2 | C3 | O3 | 58.3° | 63.2° |
O2 | C2 | C1 | H1 | 56.5° | 57.6° |
O2 | C2 | C3 | H3 | 61.1° | 57.0° |
O5 | C5 | C4 | H51 | 120.0° | 119.9° |
O5 | C5 | C4 | H52 | 120.0° | 120.0° |
O5 | C5 | C4 | C3 | 51.7° | 57.6° |
O5 | C5 | C4 | O4 | 172.9° | 177.5° |
C5 | O5 | C1 | H1 | 56.6° | 58.9° |
O5 | C5 | C4 | H4 | 68.4° | 62.4° |
O5 | C5 | H51 | H52 | 119.3° | 120.1° |
C2 | C3 | C4 | C5 | 54.4° | 57.0° |
C2 | C3 | C4 | O3 | 122.0° | 119.9° |
C2 | C3 | C4 | H3 | 118.6° | 119.8° |
C2 | C3 | O3 | H3 | 118.5° | 120.2° |
C2 | C3 | C4 | O4 | 176.1° | 176.8° |
C3 | C2 | C1 | H1 | 61.7° | 62.4° |
C2 | C3 | C4 | H4 | 65.2° | 63.0° |
C3 | C2 | O2 | HO2 | 61.3° | 179.7° |
C2 | C3 | O3 | HO3 | 180.0° | 180.0° |
C5 | C4 | C3 | O4 | 121.6° | 119.9° |
C5 | C4 | C3 | H4 | 119.6° | 120.0° |
C5 | C4 | C3 | O3 | 176.5° | 176.9° |
C5 | C4 | O4 | H4 | 119.6° | 120.2° |
C5 | C4 | C3 | H3 | 64.1° | 62.9° |
C4 | C5 | H51 | H52 | 119.3° | 120.0° |
C5 | C4 | O4 | HO4 | 180.0° | 60.3° |
C4 | C3 | O3 | H3 | 119.5° | 120.2° |
C3 | C4 | O4 | H4 | 120.0° | 120.1° |
C4 | C3 | C2 | H2 | 59.9° | 63.0° |
C3 | C4 | C5 | H51 | 171.7° | 62.3° |
C3 | C4 | C5 | H52 | 68.3° | 177.6° |
C4 | C3 | O3 | HO3 | 58.0° | 60.5° |
C3 | C4 | O4 | HO4 | 59.6° | 180.0° |
O3 | C3 | C4 | O4 | 61.9° | 63.2° |
O3 | C3 | C2 | H2 | 61.3° | 56.9° |
O3 | C3 | C4 | H4 | 56.8° | 56.9° |
O4 | C4 | C3 | H3 | 57.5° | 57.0° |
O4 | C4 | C5 | H51 | 67.1° | 57.6° |
O4 | C4 | C5 | H52 | 52.9° | 62.5° |
H1 | C1 | C2 | H2 | 176.1° | 177.8° |
H2 | C2 | C3 | H3 | 179.3° | 177.2° |
H2 | C2 | O2 | HO2 | 60.9° | 60.2° |
H3 | C3 | C4 | H4 | 176.2° | 177.1° |
H3 | C3 | O3 | HO3 | 61.5° | 59.8° |
H4 | C4 | C5 | H51 | 51.6° | 177.7° |
H4 | C4 | C5 | H52 | 171.6° | 57.6° |
H4 | C4 | O4 | HO4 | 60.4° | 59.8° |
H10 | C1' | C2' | H12 | 81.4° | 180.0° |
H10 | C1' | C2' | H13 | 38.6° | 59.9° |
H11 | C1' | C2' | H12 | 158.6° | 60.0° |
H11 | C1' | C2' | H13 | 81.4° | 180.0° |
H12 | C2' | C3' | H14 | 60.8° | 175.0° |
H13 | C2' | C3' | H14 | 59.2° | 65.0° |
H14 | C3' | C4' | H15 | 62.5° | 60.0° |
H14 | C3' | C4' | H16 | 177.5° | 60.0° |
H14 | C3' | C4' | H17 | 57.5° | 180.0° |
H14 | C3' | O' | H18 | 63.2° | 180.0° |
H15 | C4' | H16 | H17 | 120.0° | 120.0° |