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06Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C7C8doub1.38Å1.39ÅAromatic
C7C6sing1.38Å1.40ÅAromatic
C8C3sing1.39Å1.40ÅAromatic
C6C5doub1.38Å1.41ÅAromatic
C3O2sing1.36Å1.37Å
C3C4doub1.39Å1.41ÅAromatic
O2C2sing1.43Å1.48Å
C5C4sing1.38Å1.42ÅAromatic
C1C2sing1.51Å1.53Å
C1O1doub1.21Å1.23Å
C2H30sing1.09Å1.10Å
C2H31sing1.09Å1.10Å
C4H32sing1.08Å1.08Å
C5H33sing1.08Å1.08Å
C6H34sing1.08Å1.08Å
C7H35sing1.08Å1.08Å
C8H36sing1.08Å1.08Å
C1OXTsing1.34Å44.34Å
OXTHXTsing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C8C7C6120.3°120.1°
C7C8C3119.9°119.9°
C8C7H35119.9°120.0°
C7C8H36120.0°120.0°
C7C6C5120.2°120.1°
C7C6H34119.9°120.0°
C6C7H35119.9°120.0°
C8C3O2117.7°120.0°
C8C3C4120.9°119.9°
C3C8H36120.0°120.0°
C6C5C4119.9°120.0°
C6C5H33120.0°119.9°
C5C6H34119.9°119.9°
O2C3C4121.4°120.1°
C3O2C2121.2°117.0°
C3C4C5118.7°120.0°
C3C4H32120.6°120.1°
O2C2C1104.0°109.5°
O2C2H30111.3°109.5°
O2C2H31111.3°109.5°
C5C4H32120.7°120.0°
C4C5H33120.0°120.0°
C2C1O1114.4°120.0°
C1C2H30111.3°109.5°
C1C2H31111.4°109.5°
C2C1OXT167.4°120.0°
O1C1OXT78.1°120.0°
H30C2H31107.5°109.5°
C1OXTHXT90.0°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C8C7C6H35180.0°179.4°
C7C8C3H36180.0°179.3°
C8C7C6C51.2°0.3°
C7C8C3O2179.6°179.7°
C7C8C3C40.1°0.7°
C8C7C6H34178.8°179.7°
C6C7C8C30.7°0.7°
C7C6C5H34180.0°180.0°
C7C6C5C41.1°0.0°
C7C6C5H33178.9°180.0°
C6C7C8H36179.3°180.0°
C8C3O2C4179.7°179.7°
C8C3O2C2178.0°0.3°
C8C3C4C50.0°0.3°
C8C3C4H32180.0°179.7°
C3C8C7H35179.3°179.9°
C6C5C4C30.5°0.0°
C6C5C4H33180.0°180.0°
C6C5C4H32179.5°180.0°
C5C6C7H35178.8°179.7°
O2C3C4C5179.7°180.0°
C3O2C2C1157.0°180.0°
C3O2C2H3036.9°60.0°
C3O2C2H3183.0°60.0°
O2C3C4H320.3°0.0°
O2C3C8H360.4°0.4°
C4C3O2C21.7°179.9°
C3C4C5H32180.0°180.0°
C3C4C5H33179.5°180.0°
C4C3C8H36179.9°180.0°
O2C2C1H30120.0°120.1°
O2C2C1H31120.0°120.0°
O2C2C1O1178.8°0.1°
O2C2H30H31122.2°120.0°
O2C2C1OXT8.3°179.8°
C4C5C6H34178.9°180.0°
C2C1O1OXT178.4°179.7°
C1C2H30H31122.2°120.0°
C2C1OXTHXT90.0°180.0°
O1C1C2H3061.2°120.0°
O1C1C2H3158.8°120.0°
O1C1OXTHXT90.0°0.3°
H30C2C1OXT111.7°59.7°
H31C2C1OXT128.3°60.3°
H32C4C5H330.5°0.0°
H33C5C6H341.1°0.0°
H34C6C7H351.2°0.3°
H35C7C8H360.7°0.6°

227344

PDB entries from 2024-11-13

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