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SummaryGeometryRelated PDB entries

067

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
NAANABdoub1.31Å1.23ÅAromatic
NAACAFsing1.34Å1.33ÅAromatic
NABNAGsing1.36Å1.23ÅAromatic
CACCADdoub1.38Å1.39ÅAromatic
CACCAHsing1.39Å1.39ÅAromatic
CADCAIsing1.39Å1.39ÅAromatic
OAESAJdoub1.43Å1.50Å
CAFCALdoub1.38Å1.33ÅAromatic
CAFCAPsing1.49Å1.33Å
NAGCAHsing1.44Å1.33Å
NAGCALsing1.35Å1.33ÅAromatic
CAHCAMdoub1.39Å1.39ÅAromatic
CAISAJsing1.77Å1.75Å
CAICANdoub1.39Å1.39ÅAromatic
SAJNAKsing1.60Å1.63Å
SAJOAOdoub1.43Å1.50Å
CAMCANsing1.38Å1.39ÅAromatic
CAPCAQsing1.38Å1.33Å
CAPCATsing1.38Å1.33Å
CAQCARdoub1.38Å1.33Å
CARCASsing1.43Å1.33Å
CASCATdoub1.38Å1.33Å
CAUCAVsing1.41Å1.33Å
CAUCAYsing1.41Å1.33Å
CAVCAWdoub1.41Å1.33Å
CAWCAXsing1.41Å1.33Å
CAXCAYdoub1.41Å1.33Å
RUCAPsing2.20Å2.29Å
RUCAQsing2.18Å2.29Å
RUCARsing2.17Å2.29Å
RUCASsing2.17Å2.29Å
RUCATsing2.17Å2.29Å
RUCAUsing2.19Å2.29Å
RUCAVsing2.18Å2.29Å
RUCAWsing2.18Å2.29Å
RUCAXsing2.17Å2.29Å
RUCAYsing2.18Å2.29Å
CACHACsing0.94Å1.08Å
CADHADsing0.94Å1.08Å
NAKHNAKsing0.86Å1.00Å
NAKHNAAsing0.86Å1.00Å
CALHALsing0.94Å1.08Å
CAMHAMsing0.94Å1.08Å
CANHANsing0.94Å1.08Å
CAUHAUsing0.94Å1.10Å
H1CAYsing0.94Å1.10Å
H2CAXsing0.94Å1.10Å
H3CAWsing0.94Å1.10Å
H4CAVsing0.94Å1.10Å
H5CAQsing0.95Å1.10Å
H6CARsing0.95Å1.10Å
H7CASsing0.95Å1.10Å
H8CATsing0.95Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
NABNAACAF105.9°109.4°
NAANABNAG111.8°108.1°
NAACAFCAL109.6°107.7°
NAACAFCAP125.1°123.3°
NABNAGCAH121.5°121.2°
NABNAGCAL110.9°108.6°
CADCACCAH120.2°120.1°
CACCADCAI119.9°120.1°
CADCACHAC119.9°119.6°
CACCADHAD120.0°119.9°
CACCAHNAG119.7°119.8°
CACCAHCAM119.8°119.9°
CAHCACHAC119.9°120.4°
CADCAISAJ119.9°119.6°
CADCAICAN119.9°120.0°
CAICADHAD120.1°120.0°
OAESAJCAI109.2°107.2°
OAESAJNAK109.5°107.1°
OAESAJOAO109.3°119.0°
CALCAFCAP125.2°128.9°
CAFCALNAG101.7°106.2°
CAFCALHAL129.2°125.8°
CAFCAPCAQ126.0°116.1°
CAFCAPCAT125.9°117.2°
CAFCAPRU121.4°87.6°
CAHNAGCAL127.6°130.2°
NAGCAHCAM120.5°120.3°
NAGCALHAL129.1°128.0°
CAHCAMCAN120.0°120.0°
CAHCAMHAM120.0°120.5°
SAJCAICAN120.2°120.3°
CAISAJNAK109.3°109.0°
CAISAJOAO109.8°107.6°
CAICANCAM120.1°120.0°
CAICANHAN119.9°120.2°
NAKSAJOAO109.7°106.8°
SAJNAKHNAK109.5°113.4°
SAJNAKHNAA109.5°113.4°
CANCAMHAM120.0°119.5°
CAMCANHAN119.9°119.8°
CAQCAPCAT108.0°110.3°
CAPCAQCAR108.0°107.2°
CAQCAPRU73.1°70.7°
CAPCAQRU73.1°72.6°
CAPCAQH5125.4°127.0°
CAPCATCAS107.9°107.0°
CATCAPRU73.1°70.2°
CAPCATRU73.1°72.9°
CAPCATH8125.4°126.7°
CAQCARCAS108.0°107.6°
CARCAQRU73.2°71.4°
CAQCARRU73.1°71.8°
CARCAQH5125.4°125.8°
CAQCARH6125.4°126.2°
CARCASCAT108.0°107.7°
CASCARRU73.1°70.6°
CARCASRU73.1°70.9°
CASCARH6125.4°126.2°
CARCASH7125.3°126.1°
CATCASRU73.1°71.4°
CASCATRU73.1°71.5°
CATCASH7125.4°126.2°
CASCATH8125.4°126.3°
CAVCAUCAY108.0°108.1°
CAUCAVCAW107.9°108.0°
CAVCAURU73.2°71.0°
CAUCAVRU73.1°71.4°
CAVCAUHAU125.3°125.8°
CAUCAVH4125.4°126.0°
CAUCAYCAX108.0°107.9°
CAYCAURU73.1°70.8°
CAUCAYRU73.1°71.4°
CAYCAUHAU125.4°126.1°
CAUCAYH1125.4°126.0°
CAVCAWCAX108.0°108.0°
CAWCAVRU73.1°70.8°
CAVCAWRU73.1°71.3°
CAVCAWH3125.3°126.0°
CAWCAVH4125.4°126.0°
CAWCAXCAY108.0°108.0°
CAXCAWRU73.1°71.0°
CAWCAXRU73.1°71.1°
CAWCAXH2125.4°126.1°
CAXCAWH3125.3°126.0°
CAYCAXRU73.1°71.3°
CAXCAYRU73.1°70.9°
CAXCAYH1125.4°126.1°
CAYCAXH2125.4°126.0°
CAPRUCAQ33.8°36.8°
CAPRUCAR56.1°61.0°
CAPRUCAS56.0°61.0°
CAPRUCAT33.8°36.8°
CAPRUCAU120.8°116.8°
CAPRUCAV133.0°131.0°
CAPRUCAW162.6°162.9°
CAPRUCAX162.3°159.0°
CAPRUCAY132.8°128.3°
CAQRUCAR33.8°36.9°
CAQRUCAS56.1°62.8°
CAQRUCAT56.1°62.9°
CAQRUCAU133.0°130.5°
CAQRUCAV162.6°164.3°
CAQRUCAW162.3°157.1°
CAQRUCAX132.8°125.4°
CAQRUCAY120.8°114.3°
RUCAQH5109.7°122.0°
CARRUCAS33.8°38.5°
CARRUCAT56.1°63.1°
CARRUCAU162.6°163.0°
CARRUCAV162.3°157.4°
CARRUCAW132.8°124.5°
CARRUCAX120.8°112.3°
CARRUCAY132.9°128.4°
RUCARH6109.7°123.1°
CASRUCAT33.8°37.1°
CASRUCAU162.3°157.6°
CASRUCAV132.8°124.5°
CASRUCAW120.8°111.9°
CASRUCAX132.9°127.8°
CASRUCAY162.5°162.5°
RUCASH7109.6°123.2°
CATRUCAU132.8°126.6°
CATRUCAV120.8°113.4°
CATRUCAW132.9°127.8°
CATRUCAX162.5°161.5°
CATRUCAY162.4°159.4°
RUCATH8109.7°121.0°
CAURUCAV33.8°37.7°
CAURUCAW56.0°63.1°
CAURUCAX56.1°63.2°
CAURUCAY33.8°37.7°
RUCAUHAU109.6°123.8°
CAVRUCAW33.8°37.8°
CAVRUCAX56.1°63.3°
CAVRUCAY56.1°63.2°
RUCAVH4109.7°123.7°
CAWRUCAX33.7°37.9°
CAWRUCAY56.0°63.3°
RUCAWH3109.6°123.2°
CAXRUCAY33.8°37.9°
RUCAXH2109.6°123.1°
RUCAYH1109.6°123.7°
HNAKNAKHNAA109.4°116.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
NABNAACAFCAL0.6°1.1°
NABNAACAFCAP177.8°179.5°
NAANABNAGCAH178.3°179.7°
NAANABNAGCAL0.5°0.7°
CAFNAANABNAG0.1°0.3°
NAACAFCALCAP178.4°178.2°
NAACAFCALNAG0.8°1.5°
NAACAFCAPCAQ170.5°162.2°
NAACAFCAPCAT6.9°28.8°
NAACAFCAPRU98.2°95.1°
NAACAFCALHAL179.2°179.4°
NABNAGCAHCAC150.0°173.2°
NABNAGCALCAF0.8°1.3°
NABNAGCAHCAL178.6°179.6°
NABNAGCAHCAM29.6°6.7°
NABNAGCALHAL179.2°179.2°
CADCACCAHHAC180.0°179.4°
CACCADCAIHAD180.0°179.9°
CADCACCAHNAG179.3°179.6°
CADCACCAHCAM0.3°0.3°
CACCADCAISAJ179.8°179.8°
CACCADCAICAN0.4°0.3°
CAHCACCADCAI0.1°0.1°
CACCAHNAGCAM179.6°179.9°
CACCAHNAGCAL28.6°7.3°
CACCAHCAMCAN0.5°0.1°
CAHCACCADHAD179.9°179.8°
CACCAHCAMHAM179.5°179.9°
CADCAISAJOAE167.1°92.6°
CADCAISAJCAN179.8°179.5°
CADCAISAJNAK47.3°151.8°
CADCAISAJOAO73.1°36.3°
CADCAICANCAM0.2°0.5°
CAICADCACHAC179.9°179.4°
CADCAICANHAN179.9°179.8°
OAESAJCAINAK119.8°115.6°
OAESAJCAIOAO119.8°129.0°
OAESAJCAICAN13.1°86.8°
OAESAJNAKOAO120.0°128.4°
OAESAJNAKHNAK180.0°60.0°
OAESAJNAKHNAA60.0°164.5°
CAFCALNAGCAH177.9°179.1°
CAFCALNAGHAL180.0°177.9°
CALCAFCAPCAQ7.7°19.8°
CALCAFCAPCAT174.9°153.2°
CALCAFCAPRU83.6°86.9°
CAPCAFCALNAG177.6°179.7°
CAFCAPCAQCAT177.8°136.5°
CAFCAPCAQRU116.9°77.3°
CAFCAPCATRU116.9°76.5°
CAFCAPCAQCAR177.7°140.6°
CAFCAPCATCAS177.7°140.3°
CAFCAPRUCAR159.6°157.0°
CAFCAPRUCAS159.5°158.7°
CAFCAPRUCAU0.1°3.9°
CAFCAPRUCAV40.0°46.6°
CAFCAPRUCAW74.3°89.3°
CAFCAPRUCAX74.3°80.6°
CAFCAPRUCAY39.9°39.2°
CAPCAFCALHAL2.4°2.3°
CAFCAPCAQH514.4°40.0°
CAFCAPCATH814.4°39.8°
NAGCAHCAMCAN179.1°179.8°
NAGCAHCACHAC0.8°0.2°
CAHNAGCALHAL2.1°1.2°
NAGCAHCAMHAM0.9°0.3°
CALNAGCAHCAM151.9°172.8°
CAHCAMCANCAI0.3°0.3°
CAHCAMCANHAM180.0°180.0°
CAMCAHCACHAC179.7°179.6°
CAHCAMCANHAN179.7°180.0°
CAISAJNAKOAO120.4°115.9°
SAJCAICANCAM180.0°179.9°
SAJCAICADHAD0.2°0.3°
CAISAJNAKHNAK60.5°175.7°
CAISAJNAKHNAA179.6°48.9°
SAJCAICANHAN0.0°0.3°
CANCAISAJNAK132.9°28.8°
CANCAISAJOAO106.7°144.2°
CAICANCAMHAN180.0°179.7°
CANCAICADHAD179.6°179.8°
CAICANCAMHAM179.7°179.8°
SAJNAKHNAKHNAA120.0°134.1°
OAOSAJNAKHNAK60.0°68.4°
OAOSAJNAKHNAA60.0°67.0°
CAQCAPCATRU65.3°59.5°
CAPCAQCARRU65.4°64.2°
CAPCAQCARH5167.9°179.3°
CAPCAQCARCAS0.1°2.3°
CAQCAPCATCAS0.1°4.3°
CAPCAQRUH5122.3°123.2°
CAQCAPRUCAS78.2°82.5°
CAQCAPRUCAU122.4°122.7°
CAQCAPRUCAV162.3°165.4°
CAQCAPRUCAW163.3°151.9°
CAQCAPRUCAX48.0°38.2°
CAQCAPRUCAY82.4°79.6°
CAPCAQCARH6167.8°177.8°
CAQCAPCATH8167.8°175.8°
CATCAPCAQCAR0.1°4.1°
CAPCATCASCAR0.1°2.8°
CAPCATCASRU65.3°64.8°
CAPCATCASH8167.9°179.9°
CATCAPRUCAR78.2°82.9°
CAPCATRUH8122.3°123.0°
CATCAPRUCAU122.1°116.2°
CATCAPRUCAV82.2°73.5°
CATCAPRUCAW47.9°30.8°
CATCAPRUCAX163.5°159.3°
CATCAPRUCAY162.1°159.3°
CATCAPCAQH5167.8°176.5°
CAPCATCASH7167.8°177.2°
CAQCARCASRU65.3°62.6°
CAQCARCASH6167.7°180.0°
CAQCARCASCAT0.0°0.3°
CARCAQRUH5122.3°121.1°
CAQCARRUH6122.3°121.8°
CARCAQRUCAT78.2°80.5°
CARCAQRUCAU162.2°163.2°
CARCAQRUCAV163.4°160.4°
CARCAQRUCAW48.2°43.4°
CARCAQRUCAX82.5°80.1°
CARCAQRUCAY122.4°122.2°
CAQCARCASH7167.7°179.6°
CARCASCATRU65.3°62.0°
CARCASCATH7167.7°180.0°
CASCARRUCAP78.2°78.9°
CASCARRUH6122.3°121.2°
CARCASRUH7122.3°121.3°
CASCARRUCAU163.5°165.9°
CASCARRUCAV48.2°49.3°
CASCARRUCAW82.5°82.0°
CASCARRUCAX122.4°123.2°
CASCARRUCAY162.2°163.4°
CASCARCAQH5167.8°178.4°
CARCASCATH8167.8°177.3°
CATCASRUCAQ78.3°80.1°
CATCASRUH7122.3°121.6°
CASCATRUH8122.3°121.8°
CATCASRUCAU48.2°52.1°
CATCASRUCAV82.5°83.6°
CATCASRUCAW122.4°124.4°
CATCASRUCAX162.2°164.6°
CATCASRUCAY163.5°165.2°
CATCASCARH6167.7°179.6°
CAVCAUCAYRU65.3°61.5°
CAVCAUCAYHAU167.8°179.8°
CAUCAVCAWRU65.3°62.1°
CAUCAVCAWH4167.8°179.7°
CAUCAVCAWCAX0.0°0.2°
CAVCAUCAYCAX0.0°0.3°
CAVCAURUCAP122.4°123.2°
CAVCAURUCAQ162.3°164.7°
CAVCAURUCAR163.3°158.7°
CAVCAURUCAS48.0°44.7°
CAVCAURUCAT82.4°81.1°
CAVCAURUHAU122.3°120.9°
CAUCAVRUH4122.3°121.4°
CAVCAURUCAX78.2°80.3°
CAVCAUCAYH1167.8°179.9°
CAUCAVCAWH3167.7°180.0°
CAYCAUCAVCAW0.0°0.3°
CAUCAYCAXCAW0.0°0.2°
CAUCAYCAXRU65.3°62.2°
CAUCAYCAXH1167.8°179.6°
CAYCAURUCAP122.1°118.8°
CAYCAURUCAQ82.2°77.4°
CAYCAURUCAR47.8°40.8°
CAYCAURUCAS163.5°162.6°
CAYCAURUCAT162.1°160.9°
CAYCAURUHAU122.3°121.2°
CAYCAURUCAW78.2°80.4°
CAUCAYRUH1122.3°121.4°
CAUCAYCAXH2167.7°180.0°
CAYCAUCAVH4167.7°180.0°
CAVCAWCAXRU65.3°62.1°
CAVCAWCAXH3167.7°179.8°
CAVCAWCAXCAY0.0°0.0°
CAWCAVRUCAP162.3°161.0°
CAWCAVRUCAQ163.3°165.1°
CAWCAVRUCAR48.1°46.5°
CAWCAVRUCAS82.5°81.5°
CAWCAVRUCAT122.4°122.2°
CAWCAVRUH4122.3°121.1°
CAVCAWRUH3122.2°121.4°
CAWCAVRUCAY78.2°80.2°
CAWCAVCAUHAU167.8°179.8°
CAVCAWCAXH2167.7°179.8°
CAWCAXCAYRU65.3°61.9°
CAWCAXCAYH2167.7°179.7°
CAXCAWRUCAP163.5°174.1°
CAXCAWRUCAQ48.1°52.2°
CAXCAWRUCAR82.5°82.3°
CAXCAWRUCAS122.4°123.9°
CAXCAWRUCAT162.2°163.0°
CAXCAWRUCAU78.2°80.0°
CAXCAWRUH3122.2°121.1°
CAWCAXRUH2122.3°121.3°
CAWCAXCAYH1167.8°179.8°
CAXCAWCAVH4167.7°179.8°
CAYCAXRUCAP48.3°57.7°
CAYCAXRUCAQ82.5°84.8°
CAYCAXRUCAR122.4°124.5°
CAYCAXRUCAS162.3°165.7°
CAYCAXRUCAT163.4°164.0°
CAYCAXRUCAV78.2°79.9°
CAYCAXRUH2122.3°121.3°
CAXCAYRUH1122.3°121.2°
CAXCAYCAUHAU167.8°179.8°
CAYCAXCAWH3167.7°179.8°
CAPRUCARCAU85.3°87.0°
CAPRUCARCAV126.4°128.2°
CAPRUCARCAW160.7°160.9°
CAPRUCARCAX159.4°157.9°
CAPRUCARCAY119.6°117.7°
CAPRUCASCAU85.5°90.4°
CAPRUCASCAV119.8°121.9°
CAPRUCASCAW159.7°162.7°
CAPRUCASCAX160.5°157.1°
CAPRUCASCAY126.2°126.9°
CAPRUCAUCAW159.7°160.8°
CAPRUCAUCAX159.4°156.5°
CAPRUCAVCAX160.5°161.4°
CAPRUCAVCAY119.6°118.8°
CAPRUCAWCAY126.3°136.6°
CAPRUCAUHAU0.1°2.3°
CAPRUCAYH139.7°36.1°
CAPRUCAXH274.0°63.5°
CAPRUCAWH374.3°64.7°
CAPRUCAVH440.0°39.9°
CAPRUCARH6159.5°159.9°
CAPRUCASH7159.5°159.9°
CAQRUCASCAU126.5°132.3°
CAQRUCASCAV160.8°163.7°
CAQRUCASCAW159.3°155.4°
CAQRUCASCAX119.5°115.3°
CAQRUCASCAY85.2°85.0°
CAQRUCATCAU119.8°121.9°
CAQRUCATCAV159.7°163.1°
CAQRUCATCAW160.5°155.9°
CAQRUCATCAX126.1°121.4°
CAQRUCATCAY85.4°87.3°
CAQRUCAUCAW160.4°157.7°
CAQRUCAUCAX119.5°115.0°
CAQRUCAVCAX126.2°127.5°
CAQRUCAVCAY85.2°84.9°
CAQRUCAWCAY85.3°89.8°
CAQRUCAUHAU40.0°43.8°
CAQRUCAYH10.2°4.1°
CAQRUCAXH239.7°36.5°
CAQRUCAWH374.2°68.9°
CAQRUCAVH474.4°73.8°
CAQRUCASH7159.5°158.2°
CAQRUCATH8159.5°158.2°
CARRUCATCAU160.8°163.5°
CARRUCATCAV159.3°155.3°
CARRUCATCAW119.5°114.2°
CARRUCATCAX85.2°79.8°
CARRUCATCAY126.4°128.9°
CARRUCAUCAW126.0°121.2°
CARRUCAUCAX85.1°78.4°
CARRUCAVCAX85.3°84.1°
CARRUCAVCAY126.3°126.7°
CARRUCAWCAY119.7°119.9°
CARRUCAUHAU74.5°80.4°
CARRUCAYH140.1°44.5°
CARRUCAXH20.1°3.2°
CARRUCAWH339.8°38.8°
CARRUCAVH474.2°74.6°
CARRUCATH8159.5°160.2°
CASRUCAUCAW85.3°82.3°
CASRUCAUCAX126.3°125.0°
CASRUCAVCAX119.7°119.1°
CASRUCAVCAY160.7°161.7°
CASRUCAWCAY159.6°161.5°
CASRUCAUHAU74.2°76.2°
CASRUCAYH174.4°80.7°
CASRUCAXH240.0°44.4°
CASRUCAWH30.1°2.8°
CASRUCAVH439.8°39.6°
CASRUCAQH5159.5°159.7°
CATRUCAUCAW119.7°118.7°
CATRUCAUCAX160.7°161.4°
CATRUCAVCAX159.6°159.9°
CATRUCAVCAY159.4°157.6°
CATRUCAWCAY160.5°159.4°
CATRUCAUHAU39.8°39.8°
CATRUCAYH174.1°73.3°
CATRUCAXH274.3°74.7°
CATRUCAWH340.0°41.9°
CATRUCAVH40.1°1.2°
CATRUCAQH5159.5°158.4°
CATRUCARH6159.5°158.3°
CAURUCAXH2159.5°158.8°
CAURUCAWH3159.5°158.8°
CAURUCAQH539.9°42.0°
CAURUCARH674.2°72.9°
CAURUCASH774.0°69.5°
CAURUCATH839.7°36.2°
CAVRUCAYH1159.5°158.6°
CAVRUCAXH2159.5°158.8°
CAVRUCAQH574.3°78.5°
CAVRUCARH674.1°71.9°
CAVRUCASH739.8°38.0°
CAVRUCATH80.2°4.9°
CAWRUCAUHAU159.5°158.5°
CAWRUCAYH1159.5°158.8°
CAWRUCAQH574.1°77.7°
CAWRUCARH639.7°39.2°
CAWRUCASH70.1°2.8°
CAWRUCATH840.0°46.0°
CAXRUCAUHAU159.5°158.8°
CAXRUCAVH4159.5°158.7°
CAXRUCAQH539.8°41.1°
CAXRUCARH60.1°2.0°
CAXRUCASH740.0°43.0°
CAXRUCATH874.4°80.4°
CAYRUCAWH3159.5°158.7°
CAYRUCAVH4159.5°158.7°
CAYRUCAQH50.1°1.0°
CAYRUCARH640.0°42.2°
CAYRUCASH774.3°73.2°
CAYRUCATH874.1°70.9°
HACCACCADHAD0.1°0.5°
HAMCAMCANHAN0.3°0.0°
HAUCAUCAYH10.0°0.2°
HAUCAUCAVH40.0°0.2°
H1CAYCAXH20.0°0.5°
H2CAXCAWH30.1°0.1°
H3CAWCAVH40.1°0.3°
H5CAQCARH60.1°1.6°
H6CARCASH70.0°0.4°
H7CASCATH80.1°2.7°

258222

PDB entries from 2026-08-19

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