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Summary Geometry Related PDB entries

05R

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OBF	CBE	doub	1.21Å	1.23Å
CBE	CBG	sing	1.51Å	1.54Å
CBG	CBH	sing	1.51Å	1.37Å
CBG	HBG	sing	1.09Å	1.10Å
CBG	HBGA	sing	1.09Å	1.10Å
CBI	CBH	doub	1.38Å	1.39Å	Aromatic
CBH	CBO	sing	1.38Å	1.38Å	Aromatic
CBI	CBJ	sing	1.38Å	1.38Å	Aromatic
CBI	HBI	sing	1.08Å	1.08Å
CBJ	CBK	doub	1.38Å	1.39Å	Aromatic
CBJ	HBJ	sing	1.08Å	1.08Å
CBK	CLL	sing	1.74Å	1.69Å
CBK	CBM	sing	1.38Å	1.39Å	Aromatic
CBO	CBM	doub	1.38Å	1.38Å	Aromatic
CBM	CLN	sing	1.74Å	1.79Å
CBO	HBO	sing	1.08Å	1.08Å
CBE	OXT	sing	1.34Å	1.34Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OBF	CBE	CBG	122.0°	120.0°
OBF	CBE	OXT	125.0°	120.0°
CBE	CBG	CBH	112.3°	109.5°
CBE	CBG	HBG	108.8°	109.5°
CBE	CBG	HBGA	108.8°	109.4°
CBG	CBE	OXT	112.9°	120.0°
CBH	CBG	HBG	108.7°	109.5°
CBH	CBG	HBGA	108.7°	109.5°
CBG	CBH	CBI	119.0°	120.0°
CBG	CBH	CBO	118.6°	120.0°
HBG	CBG	HBGA	109.5°	109.5°
CBI	CBH	CBO	122.4°	120.0°
CBH	CBI	CBJ	119.4°	120.1°
CBH	CBI	HBI	120.3°	119.9°
CBH	CBO	CBM	118.3°	120.0°
CBH	CBO	HBO	120.8°	119.9°
CBJ	CBI	HBI	120.3°	120.0°
CBI	CBJ	CBK	118.5°	120.0°
CBI	CBJ	HBJ	120.8°	120.0°
CBK	CBJ	HBJ	120.7°	120.0°
CBJ	CBK	CLL	119.0°	120.0°
CBJ	CBK	CBM	122.1°	120.0°
CLL	CBK	CBM	118.8°	120.0°
CBK	CBM	CBO	119.3°	120.0°
CBK	CBM	CLN	120.5°	120.0°
CBO	CBM	CLN	120.3°	120.0°
CBM	CBO	HBO	120.9°	120.0°
CBE	OXT	HXT	109.5°	116.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OBF	CBE	CBG	OXT	178.8°	179.7°
OBF	CBE	CBG	CBH	48.0°	0.3°
OBF	CBE	CBG	HBG	168.4°	119.7°
OBF	CBE	CBG	HBGA	72.4°	120.3°
OBF	CBE	OXT	HXT	0.0°	0.3°
CBE	CBG	CBH	HBG	120.4°	120.0°
CBE	CBG	CBH	HBGA	120.4°	120.0°
CBE	CBG	HBG	HBGA	118.8°	120.0°
CBE	CBG	CBH	CBI	94.3°	89.7°
CBE	CBG	CBH	CBO	86.4°	90.0°
CBG	CBE	OXT	HXT	178.8°	180.0°
CBH	CBG	HBG	HBGA	118.7°	120.0°
CBG	CBH	CBI	CBO	179.3°	179.7°
CBG	CBH	CBI	CBJ	180.0°	180.0°
CBG	CBH	CBI	HBI	0.0°	0.1°
CBG	CBH	CBO	CBM	180.0°	179.8°
CBG	CBH	CBO	HBO	0.0°	0.0°
CBH	CBG	CBE	OXT	133.1°	180.0°
HBG	CBG	CBH	CBI	145.3°	150.3°
HBG	CBG	CBH	CBO	34.0°	30.0°
HBG	CBG	CBE	OXT	12.7°	60.0°
HBGA	CBG	CBH	CBI	26.1°	30.3°
HBGA	CBG	CBH	CBO	153.2°	150.0°
HBGA	CBG	CBE	OXT	106.5°	60.0°
CBH	CBI	CBJ	HBI	180.0°	179.9°
CBH	CBI	CBJ	CBK	0.4°	0.1°
CBH	CBI	CBJ	HBJ	179.6°	180.0°
CBI	CBH	CBO	CBM	0.7°	0.5°
CBI	CBH	CBO	HBO	179.3°	179.7°
CBO	CBH	CBI	CBJ	0.7°	0.3°
CBO	CBH	CBI	HBI	179.3°	179.8°
CBH	CBO	CBM	CBK	0.4°	0.5°
CBH	CBO	CBM	HBO	180.0°	179.8°
CBH	CBO	CBM	CLN	179.6°	179.7°
CBI	CBJ	CBK	HBJ	180.0°	180.0°
CBI	CBJ	CBK	CLL	179.6°	179.9°
CBI	CBJ	CBK	CBM	0.1°	0.0°
HBI	CBI	CBJ	CBK	179.6°	179.9°
HBI	CBI	CBJ	HBJ	0.4°	0.1°
CBJ	CBK	CLL	CBM	179.7°	180.0°
CBJ	CBK	CBM	CBO	0.1°	0.2°
CBJ	CBK	CBM	CLN	179.8°	180.0°
HBJ	CBJ	CBK	CLL	0.4°	0.0°
HBJ	CBJ	CBK	CBM	179.9°	180.0°
CLL	CBK	CBM	CBO	179.6°	179.7°
CLL	CBK	CBM	CLN	0.5°	0.1°
CBK	CBM	CBO	CLN	180.0°	179.8°
CBK	CBM	CBO	HBO	179.6°	179.7°
CLN	CBM	CBO	HBO	0.5°	0.1°

246704

PDB entries from 2025-12-24

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