05L

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	SE	sing	1.96Å	1.97Å
C1'	SE	sing	1.96Å	1.96Å
C1	C2	sing	1.53Å	1.52Å
C1	O5	sing	1.43Å	1.41Å
C1	H1	sing	1.09Å	1.10Å
O2	C2	sing	1.43Å	1.42Å
C3	C2	sing	1.53Å	1.54Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C3	O3	sing	1.43Å	1.41Å
C3	C4	sing	1.53Å	1.54Å
C3	H3	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C5	C4	sing	1.53Å	1.54Å
O4	C4	sing	1.43Å	1.41Å
C4	H4	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
C5	O5	sing	1.43Å	1.44Å
C5	C6	sing	1.53Å	1.53Å
C5	H5	sing	1.09Å	1.10Å
C6	O6	sing	1.43Å	1.42Å
C6	H61	sing	1.09Å	1.10Å
C6	H62	sing	1.09Å	1.10Å
O6	HO6	sing	0.97Å	0.95Å
C1'	C2'	sing	1.53Å	1.49Å
C1'	H1'	sing	1.09Å	1.10Å
C1'	H1'A	sing	1.09Å	1.10Å
C2'	C3'	sing	1.53Å	1.51Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2'A	sing	1.09Å	1.10Å
C3'	C4'	sing	1.53Å	1.51Å
C3'	H3'	sing	1.09Å	1.10Å
C3'	H3'A	sing	1.09Å	1.10Å
C4'	C5'	sing	1.53Å	1.51Å
C4'	H4'	sing	1.09Å	1.10Å
C4'	H4'A	sing	1.09Å	1.10Å
C5'	C6'	sing	1.53Å	1.52Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
C6'	C7'	sing	1.53Å	1.50Å
C6'	H6'	sing	1.09Å	1.10Å
C6'	H6'A	sing	1.09Å	1.10Å
C7'	H7'	sing	1.09Å	1.10Å
C7'	H7'A	sing	1.09Å	1.10Å
C7'	H7'B	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	SE	C1'	100.1°	101.0°
SE	C1	C2	103.0°	109.5°
SE	C1	O5	105.8°	109.5°
SE	C1	H1	106.1°	109.5°
SE	C1'	C2'	103.5°	109.4°
SE	C1'	H1'	110.9°	109.5°
SE	C1'	H1'A	110.9°	109.4°
C2	C1	O5	117.0°	109.4°
C2	C1	H1	111.0°	109.5°
C1	C2	O2	107.6°	109.5°
C1	C2	C3	108.2°	109.2°
C1	C2	H2	110.6°	109.5°
O5	C1	H1	112.7°	109.5°
C1	O5	C5	114.6°	114.1°
O2	C2	C3	107.7°	109.5°
O2	C2	H2	112.2°	109.5°
C2	O2	HO2	109.5°	114.0°
C3	C2	H2	110.4°	109.6°
C2	C3	O3	110.1°	109.5°
C2	C3	C4	106.7°	109.0°
C2	C3	H3	109.7°	109.6°
O3	C3	C4	109.0°	109.5°
O3	C3	H3	111.5°	109.6°
C3	O3	HO3	109.5°	114.0°
C4	C3	H3	109.7°	109.6°
C3	C4	C5	107.0°	109.1°
C3	C4	O4	110.3°	109.5°
C3	C4	H4	109.1°	109.5°
C5	C4	O4	110.4°	109.6°
C5	C4	H4	109.1°	109.5°
C4	C5	O5	108.4°	109.4°
C4	C5	C6	111.7°	109.5°
C4	C5	H5	109.4°	109.4°
O4	C4	H4	110.8°	109.5°
C4	O4	HO4	109.5°	114.0°
O5	C5	C6	106.9°	109.5°
O5	C5	H5	110.8°	109.5°
C6	C5	H5	109.6°	109.5°
C5	C6	O6	107.9°	109.5°
C5	C6	H61	109.9°	109.5°
C5	C6	H62	109.9°	109.5°
O6	C6	H61	109.8°	109.4°
O6	C6	H62	109.9°	109.5°
C6	O6	HO6	109.5°	114.0°
H61	C6	H62	109.5°	109.4°
C2'	C1'	H1'	110.9°	109.5°
C2'	C1'	H1'A	110.9°	109.5°
C1'	C2'	C3'	108.4°	109.4°
C1'	C2'	H2'	109.7°	109.5°
C1'	C2'	H2'A	109.7°	109.5°
H1'	C1'	H1'A	109.5°	109.5°
C3'	C2'	H2'	109.7°	109.5°
C3'	C2'	H2'A	109.7°	109.4°
C2'	C3'	C4'	109.7°	109.5°
C2'	C3'	H3'	109.4°	109.5°
C2'	C3'	H3'A	109.4°	109.5°
H2'	C2'	H2'A	109.5°	109.5°
C4'	C3'	H3'	109.4°	109.4°
C4'	C3'	H3'A	109.4°	109.5°
C3'	C4'	C5'	107.9°	109.5°
C3'	C4'	H4'	109.9°	109.4°
C3'	C4'	H4'A	109.9°	109.5°
H3'	C3'	H3'A	109.5°	109.5°
C5'	C4'	H4'	109.9°	109.5°
C5'	C4'	H4'A	109.9°	109.5°
C4'	C5'	C6'	109.0°	109.4°
C4'	C5'	H5'	109.6°	109.5°
C4'	C5'	H5'A	109.6°	109.4°
H4'	C4'	H4'A	109.5°	109.5°
C6'	C5'	H5'	109.6°	109.5°
C6'	C5'	H5'A	109.6°	109.5°
C5'	C6'	C7'	107.5°	109.4°
C5'	C6'	H6'	109.9°	109.5°
C5'	C6'	H6'A	109.9°	109.5°
H5'	C5'	H5'A	109.5°	109.5°
C7'	C6'	H6'	110.0°	109.5°
C7'	C6'	H6'A	110.0°	109.4°
C6'	C7'	H7'	109.5°	109.5°
C6'	C7'	H7'A	109.5°	109.5°
C6'	C7'	H7'B	109.5°	109.5°
H6'	C6'	H6'A	109.5°	109.5°
H7'	C7'	H7'A	109.4°	109.4°
H7'	C7'	H7'B	109.5°	109.5°
H7'A	C7'	H7'B	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
SE	C1	C2	O5	115.6°	120.0°
SE	C1	C2	H1	113.1°	120.0°
SE	C1	O5	H1	115.5°	120.0°
SE	C1	C2	O2	79.6°	62.5°
SE	C1	C2	C3	164.3°	177.6°
SE	C1	C2	H2	43.2°	57.7°
SE	C1	O5	C5	163.1°	178.9°
C1	SE	C1'	C2'	131.7°	180.0°
C1	SE	C1'	H1'	109.3°	60.0°
C1	SE	C1'	H1'A	12.6°	60.0°
C1'	SE	C1	C2	139.9°	180.0°
C1'	SE	C1	O5	96.7°	60.1°
C1'	SE	C1	H1	23.3°	60.0°
SE	C1'	C2'	H1'	119.1°	120.0°
SE	C1'	C2'	H1'A	119.1°	119.9°
SE	C1'	H1'	H1'A	122.8°	120.0°
SE	C1'	C2'	C3'	109.8°	180.0°
SE	C1'	C2'	H2'	130.3°	60.0°
SE	C1'	C2'	H2'A	10.0°	60.1°
C2	C1	O5	H1	130.5°	120.0°
C1	C2	O2	C3	116.5°	119.7°
C1	C2	O2	H2	121.9°	120.1°
C1	C2	C3	H2	121.2°	119.9°
C1	C2	O2	HO2	180.0°	60.0°
C1	C2	C3	O3	174.6°	176.8°
C1	C2	C3	C4	56.5°	57.1°
C1	C2	C3	H3	62.3°	62.9°
C2	C1	O5	C5	49.0°	61.2°
O5	C1	C2	O2	164.8°	177.6°
O5	C1	C2	C3	48.7°	57.7°
O5	C1	C2	H2	72.3°	62.3°
C1	O5	C5	C4	55.4°	61.2°
C1	O5	C5	C6	175.9°	178.9°
C1	O5	C5	H5	64.7°	58.8°
H1	C1	C2	O2	33.5°	57.6°
H1	C1	C2	C3	82.6°	62.3°
H1	C1	C2	H2	156.4°	177.7°
H1	C1	O5	C5	81.4°	58.9°
O2	C2	C3	H2	122.8°	120.2°
O2	C2	C3	O3	69.3°	63.3°
O2	C2	C3	C4	172.5°	176.9°
O2	C2	C3	H3	53.8°	57.0°
C3	C2	O2	HO2	63.5°	179.7°
C2	C3	O3	C4	116.7°	119.5°
C2	C3	O3	H3	122.0°	120.3°
C2	C3	C4	H3	118.8°	119.9°
C2	C3	O3	HO3	180.0°	60.1°
C2	C3	C4	C5	66.5°	57.0°
C2	C3	C4	O4	173.4°	177.0°
C2	C3	C4	H4	51.4°	62.9°
H2	C2	O2	HO2	58.1°	60.1°
H2	C2	C3	O3	53.5°	56.9°
H2	C2	C3	C4	64.7°	62.9°
H2	C2	C3	H3	176.5°	177.2°
O3	C3	C4	H3	122.4°	120.2°
O3	C3	C4	C5	174.7°	176.8°
O3	C3	C4	O4	54.5°	63.2°
O3	C3	C4	H4	67.4°	56.9°
C4	C3	O3	HO3	63.3°	179.6°
C3	C4	C5	O4	120.1°	119.9°
C3	C4	C5	H4	117.9°	119.9°
C3	C4	O4	H4	120.9°	120.1°
C3	C4	O4	HO4	180.0°	60.0°
C3	C4	C5	O5	64.8°	57.6°
C3	C4	C5	C6	177.6°	177.6°
C3	C4	C5	H5	56.1°	62.4°
H3	C3	O3	HO3	58.0°	60.2°
H3	C3	C4	C5	52.3°	62.9°
H3	C3	C4	O4	67.8°	57.0°
H3	C3	C4	H4	170.2°	177.2°
C5	C4	O4	H4	121.0°	120.2°
C5	C4	O4	HO4	61.9°	179.7°
C4	C5	O5	C6	120.5°	120.0°
C4	C5	O5	H5	120.1°	120.0°
C4	C5	C6	H5	121.4°	120.0°
C4	C5	C6	O6	60.8°	174.9°
C4	C5	C6	H61	179.5°	55.0°
C4	C5	C6	H62	59.0°	65.0°
O4	C4	C5	O5	175.1°	177.5°
O4	C4	C5	C6	57.6°	62.5°
O4	C4	C5	H5	63.9°	57.5°
H4	C4	O4	HO4	59.1°	60.1°
H4	C4	C5	O5	53.1°	62.3°
H4	C4	C5	C6	64.4°	57.7°
H4	C4	C5	H5	174.0°	177.7°
O5	C5	C6	H5	120.2°	120.1°
O5	C5	C6	O6	57.6°	65.1°
O5	C5	C6	H61	62.1°	174.9°
O5	C5	C6	H62	177.4°	55.0°
C5	C6	O6	H61	119.7°	120.0°
C5	C6	O6	H62	119.8°	120.1°
C5	C6	H61	H62	120.7°	120.0°
C5	C6	O6	HO6	180.0°	179.9°
H5	C5	C6	O6	177.8°	55.0°
H5	C5	C6	H61	58.1°	65.0°
H5	C5	C6	H62	62.4°	175.0°
O6	C6	H61	H62	120.7°	120.0°
H61	C6	O6	HO6	60.3°	60.1°
H62	C6	O6	HO6	60.2°	59.9°
C2'	C1'	H1'	H1'A	122.7°	120.1°
C1'	C2'	C3'	H2'	119.8°	120.0°
C1'	C2'	C3'	H2'A	119.9°	120.0°
C1'	C2'	H2'	H2'A	120.5°	120.1°
C1'	C2'	C3'	C4'	169.6°	180.0°
C1'	C2'	C3'	H3'	49.6°	60.0°
C1'	C2'	C3'	H3'A	70.4°	60.0°
H1'	C1'	C2'	C3'	9.3°	60.0°
H1'	C1'	C2'	H2'	110.6°	180.0°
H1'	C1'	C2'	H2'A	129.1°	59.9°
H1'A	C1'	C2'	C3'	131.1°	60.1°
H1'A	C1'	C2'	H2'	11.3°	59.9°
H1'A	C1'	C2'	H2'A	109.0°	180.0°
C3'	C2'	H2'	H2'A	120.5°	120.0°
C2'	C3'	C4'	H3'	120.0°	120.0°
C2'	C3'	C4'	H3'A	120.0°	120.0°
C2'	C3'	H3'	H3'A	119.9°	120.0°
C2'	C3'	C4'	C5'	145.0°	180.0°
C2'	C3'	C4'	H4'	95.2°	60.0°
C2'	C3'	C4'	H4'A	25.3°	60.0°
H2'	C2'	C3'	C4'	70.6°	60.0°
H2'	C2'	C3'	H3'	169.4°	180.0°
H2'	C2'	C3'	H3'A	49.5°	60.0°
H2'A	C2'	C3'	C4'	49.7°	60.0°
H2'A	C2'	C3'	H3'	70.3°	60.0°
H2'A	C2'	C3'	H3'A	169.8°	180.0°
C4'	C3'	H3'	H3'A	119.9°	120.0°
C3'	C4'	C5'	H4'	119.7°	120.0°
C3'	C4'	C5'	H4'A	119.8°	120.0°
C3'	C4'	H4'	H4'A	120.7°	120.0°
C3'	C4'	C5'	C6'	147.6°	180.0°
C3'	C4'	C5'	H5'	27.7°	60.0°
C3'	C4'	C5'	H5'A	92.4°	60.0°
H3'	C3'	C4'	C5'	25.0°	60.0°
H3'	C3'	C4'	H4'	144.7°	NaN°
H3'	C3'	C4'	H4'A	94.8°	60.0°
H3'A	C3'	C4'	C5'	95.0°	60.0°
H3'A	C3'	C4'	H4'	24.8°	60.0°
H3'A	C3'	C4'	H4'A	145.3°	180.0°
C5'	C4'	H4'	H4'A	120.7°	120.0°
C4'	C5'	C6'	H5'	119.9°	120.0°
C4'	C5'	C6'	H5'A	119.9°	119.9°
C4'	C5'	H5'	H5'A	120.2°	120.0°
C4'	C5'	C6'	C7'	147.4°	180.0°
C4'	C5'	C6'	H6'	27.7°	60.0°
C4'	C5'	C6'	H6'A	92.9°	60.1°
H4'	C4'	C5'	C6'	92.6°	60.0°
H4'	C4'	C5'	H5'	147.5°	180.0°
H4'	C4'	C5'	H5'A	27.3°	60.0°
H4'A	C4'	C5'	C6'	27.9°	60.0°
H4'A	C4'	C5'	H5'	92.0°	60.0°
H4'A	C4'	C5'	H5'A	147.8°	180.0°
C6'	C5'	H5'	H5'A	120.2°	120.1°
C5'	C6'	C7'	H6'	119.7°	120.0°
C5'	C6'	C7'	H6'A	119.7°	120.0°
C5'	C6'	H6'	H6'A	120.9°	120.1°
C5'	C6'	C7'	H7'	180.0°	180.0°
C5'	C6'	C7'	H7'A	60.0°	60.0°
C5'	C6'	C7'	H7'B	60.0°	60.0°
H5'	C5'	C6'	C7'	92.7°	60.0°
H5'	C5'	C6'	H6'	147.6°	180.0°
H5'	C5'	C6'	H6'A	27.0°	59.9°
H5'A	C5'	C6'	C7'	27.5°	60.1°
H5'A	C5'	C6'	H6'	92.3°	59.9°
H5'A	C5'	C6'	H6'A	147.2°	180.0°
C7'	C6'	H6'	H6'A	120.9°	120.0°
C6'	C7'	H7'	H7'A	120.0°	120.0°
C6'	C7'	H7'	H7'B	120.0°	120.1°
C6'	C7'	H7'A	H7'B	120.0°	120.0°
H6'	C6'	C7'	H7'	60.3°	60.0°
H6'	C6'	C7'	H7'A	179.7°	180.0°
H6'	C6'	C7'	H7'B	59.7°	60.0°
H6'A	C6'	C7'	H7'	60.3°	60.0°
H6'A	C6'	C7'	H7'A	59.7°	60.0°
H6'A	C6'	C7'	H7'B	179.7°	180.0°
H7'	C7'	H7'A	H7'B	120.0°	120.0°

Definition date:	2011-11-29
Last modified:	2020-07-17
Release status:	REL
Processing site:	RCSB
Derived from:	3USP