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05K

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OP2Psing1.61Å1.60Å
C5'1C4'1sing1.53Å1.52Å
C5'1O5'sing1.43Å1.42Å
PO5'sing1.61Å1.60Å
POP1doub1.48Å1.60Å
C4'1O4'1sing1.44Å1.43Å
C4'1C3'1sing1.55Å1.51Å
O4'1C1'1sing1.44Å1.43Å
C11C3'1sing1.53Å1.51Å
C11C1sing1.51Å1.50Å
C3'1C2'1sing1.55Å1.51Å
C1'1C2'1sing1.54Å1.51Å
C1'1N11sing1.46Å1.46Å
C61N11sing1.37Å1.33Å
C61C51doub1.35Å1.38Å
N11C21sing1.35Å1.40Å
C1O1doub1.21Å1.22Å
C1N5'sing1.35Å1.32Å
C5AC51sing1.51Å1.50Å
C51C41sing1.42Å1.47Å
N5'C5'sing1.46Å1.45Å
C21O21doub1.22Å1.24Å
C21N31sing1.35Å1.33Å
C41N31sing1.35Å1.33Å
C41O41doub1.22Å1.24Å
C5'C4'sing1.53Å1.51Å
O4'C4'sing1.44Å1.43Å
O4'C1'sing1.44Å1.43Å
C5MC5sing1.51Å1.50Å
C4'C3'sing1.55Å1.50Å
C6C5doub1.35Å1.37Å
C6N1sing1.37Å1.33Å
C5C4sing1.42Å1.47Å
C1'N1sing1.47Å1.46Å
C1'C2'sing1.54Å1.52Å
N1C2sing1.35Å1.41Å
C3'C2'sing1.55Å1.51Å
C3'O3'sing1.43Å1.44Å
C4O4doub1.22Å1.24Å
C4N3sing1.35Å1.33Å
C2N3sing1.35Å1.33Å
C2O2doub1.22Å1.24Å
C1'H1'sing1.09Å1.10Å
C5AH5A1sing1.09Å1.10Å
C5AH5A2sing1.09Å1.10Å
C5AH5A3sing1.09Å1.10Å
C2'H2'1sing1.09Å1.10Å
C2'H2'2sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C6H6sing1.08Å1.08Å
C61H61sing1.08Å1.08Å
C5MH52sing1.09Å1.10Å
C5MH53sing1.09Å1.10Å
C5MH51sing1.09Å1.10Å
C11H2sing1.09Å1.10Å
C11H3sing1.09Å1.10Å
N3HN3sing0.97Å1.00Å
N31H31sing0.97Å1.00Å
N5'HN5'sing0.97Å1.00Å
O3'HO3'sing0.97Å0.95Å
OP2HOP2sing0.97Å0.95Å
C1'1H1sing1.09Å1.10Å
C2'1HC22sing1.09Å1.10Å
C2'1HC21sing1.09Å1.10Å
C3'1H3'1sing1.09Å1.10Å
C4'1HC41sing1.09Å1.10Å
C5'1HC51sing1.09Å1.10Å
C5'1HC52sing1.09Å1.10Å
POP3sing1.61Å26.16Å
OP3HOP3sing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OP2PO5'112.4°109.4°
OP2POP1112.4°109.5°
POP2HOP2109.5°114.0°
OP2POP378.0°109.5°
C4'1C5'1O5'109.1°109.5°
C5'1C4'1O4'1110.1°110.6°
C5'1C4'1C3'1110.7°110.6°
C5'1C4'1HC41110.0°110.7°
C4'1C5'1HC51109.6°109.4°
C4'1C5'1HC52109.6°109.4°
C5'1O5'P119.4°123.0°
O5'C5'1HC51109.6°109.5°
O5'C5'1HC52109.6°109.5°
O5'POP1111.7°109.5°
O5'POP347.0°109.5°
OP1POP398.4°109.5°
O4'1C4'1C3'1104.4°103.5°
C4'1O4'1C1'1110.9°107.0°
O4'1C4'1HC41111.4°110.6°
C4'1C3'1C11114.7°110.9°
C4'1C3'1C2'1103.4°102.1°
C4'1C3'1H3'1109.5°110.9°
C3'1C4'1HC41110.1°110.6°
O4'1C1'1C2'1106.2°107.2°
O4'1C1'1N11112.5°109.9°
O4'1C1'1H1110.8°110.1°
C3'1C11C1106.3°109.4°
C11C3'1C2'1110.1°110.9°
C3'1C11H2110.2°109.5°
C3'1C11H3110.3°109.5°
C11C3'1H3'1109.4°110.8°
C11C1O1120.8°120.0°
C11C1N5'116.4°120.0°
C1C11H2110.3°109.5°
C1C11H3110.3°109.5°
C3'1C2'1C1'1105.3°104.2°
C3'1C2'1HC22110.5°110.5°
C3'1C2'1HC21110.5°110.6°
C2'1C3'1H3'1109.5°110.9°
C2'1C1'1N11107.3°109.8°
C2'1C1'1H1109.6°109.9°
C1'1C2'1HC22110.5°110.5°
C1'1C2'1HC21110.5°110.5°
C1'1N11C61121.6°119.7°
C1'1N11C21118.0°119.7°
N11C1'1H1110.4°109.9°
N11C61C51120.1°119.7°
C61N11C21120.3°120.6°
N11C61H61119.9°120.1°
C61C51C5A120.8°120.5°
C61C51C41118.1°119.1°
C51C61H61119.9°120.1°
N11C21O21118.9°119.5°
N11C21N31121.4°120.9°
O1C1N5'122.8°120.0°
C1N5'C5'126.0°120.0°
C1N5'HN5'117.0°120.0°
C5AC51C41121.1°120.5°
C51C5AH5A1109.5°109.5°
C51C5AH5A2109.5°109.4°
C51C5AH5A3109.4°109.4°
C51C41N31119.0°119.4°
C51C41O41120.4°120.3°
N5'C5'C4'103.7°109.5°
N5'C5'H5'1110.9°109.5°
N5'C5'H5'2110.9°109.5°
C5'N5'HN5'117.0°120.1°
O21C21N31119.7°119.6°
C21N31C41121.1°120.3°
C21N31H31119.5°119.9°
N31C41O41120.6°120.3°
C41N31H31119.5°119.8°
C5'C4'O4'110.4°110.7°
C5'C4'C3'110.5°110.6°
C5'C4'H4'110.0°110.6°
C4'C5'H5'1110.9°109.4°
C4'C5'H5'2110.9°109.4°
C4'O4'C1'111.5°107.0°
O4'C4'C3'104.4°103.5°
O4'C4'H4'111.3°110.6°
O4'C1'N1109.7°109.8°
O4'C1'C2'105.7°107.3°
O4'C1'H1'110.9°110.0°
C5MC5C6120.1°120.5°
C5MC5C4121.7°120.4°
C5C5MH52109.5°109.5°
C5C5MH53109.4°109.5°
C5C5MH51109.5°109.5°
C4'C3'C2'103.6°102.1°
C4'C3'O3'112.1°110.9°
C4'C3'H3'109.1°111.0°
C3'C4'H4'110.1°110.7°
C5C6N1120.4°119.7°
C6C5C4118.2°119.1°
C5C6H6119.8°120.1°
C6N1C1'118.7°119.7°
C6N1C2120.0°120.6°
N1C6H6119.8°120.2°
C5C4O4120.6°120.3°
C5C4N3118.9°119.4°
N1C1'C2'110.2°109.9°
C1'N1C2121.3°119.7°
N1C1'H1'110.5°109.8°
C1'C2'C3'104.4°104.2°
C2'C1'H1'109.7°109.9°
C1'C2'H2'1110.7°110.5°
C1'C2'H2'2110.7°110.5°
N1C2N3121.2°120.9°
N1C2O2121.0°119.5°
C2'C3'O3'112.8°110.9°
C3'C2'H2'1110.7°110.6°
C3'C2'H2'2110.7°110.6°
C2'C3'H3'109.1°110.9°
O3'C3'H3'110.0°110.8°
C3'O3'HO3'109.5°114.0°
O4C4N3120.6°120.3°
C4N3C2121.3°120.3°
C4N3HN3119.4°119.9°
N3C2O2117.8°119.6°
C2N3HN3119.4°119.9°
H5A1C5AH5A2109.4°109.5°
H5A1C5AH5A3109.5°109.5°
H5A2C5AH5A3109.5°109.5°
H2'1C2'H2'2109.5°110.4°
H5'1C5'H5'2109.5°109.5°
H52C5MH53109.5°109.4°
H52C5MH51109.5°109.5°
H53C5MH51109.5°109.5°
H2C11H3109.4°109.5°
HC22C2'1HC21109.5°110.4°
HC51C5'1HC52109.5°109.5°
POP3HOP390.0°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OP2PO5'C5'159.9°175.0°
OP2PO5'OP1127.3°120.0°
OP2PO5'OP346.2°120.0°
OP2POP1OP380.4°120.0°
OP2POP3HOP390.0°60.0°
C4'1C5'1O5'HC51119.9°119.9°
C4'1C5'1O5'HC52120.0°120.0°
C4'1C5'1O5'P154.6°180.0°
C5'1C4'1O4'1C3'1118.9°118.5°
C5'1C4'1O4'1HC41122.3°123.0°
C5'1C4'1C3'1HC41121.9°123.0°
C5'1C4'1O4'1C1'1144.9°158.6°
C5'1C4'1C3'1C1190.4°86.3°
C5'1C4'1C3'1C2'1149.7°155.5°
C5'1C4'1C3'1H3'133.0°37.3°
C4'1C5'1HC51HC52120.2°120.0°
C5'1O5'POP1172.8°55.0°
O5'C5'1C4'1O4'162.5°66.4°
O5'C5'1C4'1C3'152.5°179.5°
O5'C5'1C4'1HC41174.4°56.5°
O5'C5'1HC51HC52120.2°120.1°
C5'1O5'POP3106.1°65.0°
O5'POP1OP346.9°120.0°
O5'POP2HOP2127.0°180.0°
PO5'C5'1HC5134.6°60.0°
PO5'C5'1HC5285.5°60.1°
O5'POP3HOP390.0°60.0°
OP1POP2HOP20.0°60.0°
OP1POP3HOP390.0°180.0°
O4'1C4'1C3'1HC41119.7°118.5°
O4'1C4'1C3'1C11151.1°155.2°
O4'1C4'1C3'1C2'131.3°37.0°
C4'1O4'1C1'1C2'19.7°26.6°
C4'1O4'1C1'1N11126.7°145.9°
C4'1O4'1C1'1H1109.2°92.9°
O4'1C4'1C3'1H3'185.4°81.2°
O4'1C4'1C5'1HC5157.4°53.5°
O4'1C4'1C5'1HC52177.5°173.6°
C3'1C4'1O4'1C1'126.1°40.1°
C4'1C3'1C11C2'1116.1°112.7°
C4'1C3'1C11H3'1123.4°123.6°
C4'1C3'1C11C1177.4°179.2°
C4'1C3'1C2'1H3'1116.6°118.2°
C4'1C3'1C2'1C1'125.5°20.8°
C4'1C3'1C11H257.8°59.2°
C4'1C3'1C11H363.1°60.8°
C4'1C3'1C2'1HC22144.9°97.8°
C4'1C3'1C2'1HC2193.8°139.6°
C3'1C4'1C5'1HC51172.4°60.5°
C3'1C4'1C5'1HC5267.5°59.5°
O4'1C1'1C2'1C3'110.7°2.1°
O4'1C1'1C2'1N11120.4°119.4°
O4'1C1'1C2'1H1119.8°119.6°
O4'1C1'1N11H1124.3°121.2°
O4'1C1'1N11C6128.1°127.2°
O4'1C1'1N11C21153.1°52.8°
O4'1C1'1C2'1HC22130.0°120.7°
O4'1C1'1C2'1HC21108.7°116.8°
C1'1O4'1C4'1HC4192.8°78.4°
C3'1C11C1H2119.5°120.0°
C3'1C11C1H3119.5°120.0°
C11C3'1C2'1H3'1120.4°123.7°
C11C3'1C2'1C1'1148.5°139.0°
C3'1C11C1O157.6°0.0°
C3'1C11C1N5'122.0°179.7°
C3'1C11H2H3121.4°120.0°
C11C3'1C2'1HC2292.1°20.4°
C11C3'1C2'1HC2129.2°102.2°
C11C3'1C4'1HC4131.5°36.7°
C1C11C3'1C2'166.5°66.5°
C11C1O1N5'179.5°179.8°
C11C1N5'C5'179.8°179.7°
C1C11H2H3121.5°120.0°
C11C1N5'HN5'0.2°0.3°
C1C11C3'1H3'153.9°57.2°
C3'1C2'1C1'1HC22119.4°118.6°
C3'1C2'1C1'1HC21119.3°118.8°
C3'1C2'1C1'1N11109.8°121.5°
C2'1C3'1C11H2174.0°53.5°
C2'1C3'1C11H353.0°173.5°
C3'1C2'1C1'1H1130.4°117.5°
C3'1C2'1HC22HC21121.9°122.6°
C2'1C3'1C4'1HC4188.4°81.5°
C2'1C1'1N11H1119.3°121.0°
C2'1C1'1N11C6188.3°115.0°
C2'1C1'1N11C2190.6°64.9°
C1'1C2'1HC22HC21121.9°122.6°
C1'1C2'1C3'1H3'191.1°97.3°
C1'1N11C61C21178.8°180.0°
C1'1N11C61C51179.7°180.0°
C1'1N11C21O210.9°0.0°
C1'1N11C21N31179.6°179.7°
C1'1N11C61H610.3°0.0°
N11C1'1C2'1HC229.6°119.9°
N11C1'1C2'1HC21130.9°2.6°
N11C61C51H61180.0°180.0°
N11C61C51C5A180.0°180.0°
N11C61C51C410.6°0.2°
C61N11C21O21179.8°180.0°
C61N11C21N310.8°0.3°
C61N11C1'1H1152.4°6.0°
C51C61N11C210.9°0.1°
C61C51C5AC41179.4°179.8°
C61C51C41N310.2°0.2°
C61C51C41O41179.7°179.7°
C61C51C5AH5A1180.0°179.8°
C61C51C5AH5A260.0°60.2°
C61C51C5AH5A360.0°59.7°
N11C21O21N31179.5°179.7°
N11C21N31C410.4°0.3°
C21N11C61H61179.1°179.9°
N11C21N31H31179.6°179.6°
C21N11C1'1H128.7°174.1°
O1C1N5'C5'0.2°0.0°
O1C1C11H261.9°120.0°
O1C1C11H3177.1°120.0°
O1C1N5'HN5'179.8°180.0°
C1N5'C5'HN5'180.0°180.0°
C1N5'C5'C4'126.1°180.0°
C1N5'C5'H5'17.0°60.0°
C1N5'C5'H5'2114.8°60.0°
N5'C1C11H2118.5°59.7°
N5'C1C11H32.5°60.3°
C5AC51C41N31179.7°180.0°
C5AC51C41O410.3°0.0°
C51C5AH5A1H5A2120.0°120.0°
C51C5AH5A1H5A3120.0°120.0°
C51C5AH5A2H5A3120.0°120.0°
C5AC51C61H610.0°0.0°
C51C41N31C210.2°0.0°
C51C41N31O41179.9°180.0°
C41C51C5AH5A10.6°0.0°
C41C51C5AH5A2120.6°120.0°
C41C51C5AH5A3119.4°120.0°
C41C51C61H61179.4°179.8°
C51C41N31H31179.8°179.9°
N5'C5'C4'H5'1119.1°120.0°
N5'C5'C4'H5'2119.1°120.0°
N5'C5'C4'O4'43.4°70.8°
N5'C5'C4'C3'158.4°175.0°
N5'C5'C4'H4'79.8°52.1°
N5'C5'H5'1H5'2122.7°120.1°
O21C21N31C41179.9°180.0°
O21C21N31H310.1°0.1°
C21N31C41H31180.0°179.9°
C21N31C41O41179.8°180.0°
O41C41N31H310.2°0.1°
C5'C4'O4'C3'118.7°118.6°
C5'C4'O4'H4'122.5°122.9°
C5'C4'O4'C1'140.8°158.7°
C5'C4'C3'H4'121.7°122.9°
C5'C4'C3'C2'150.5°155.7°
C5'C4'C3'O3'87.7°86.1°
C5'C4'C3'H3'34.4°37.4°
C4'C5'H5'1H5'2122.6°120.0°
C4'C5'N5'HN5'53.9°0.0°
O4'C4'C3'H4'119.6°118.5°
C4'O4'C1'N1122.0°145.9°
C4'O4'C1'C2'3.1°26.5°
O4'C4'C3'C2'31.8°37.1°
O4'C4'C3'O3'153.7°155.2°
C4'O4'C1'H1'115.7°93.0°
O4'C4'C3'H3'84.3°81.2°
O4'C4'C5'H5'175.7°169.2°
O4'C4'C5'H5'2162.5°49.2°
C1'O4'C4'C3'22.1°40.1°
O4'C1'N1C69.3°127.2°
O4'C1'N1C2'116.0°117.8°
O4'C1'N1H1'122.6°121.2°
O4'C1'C2'H1'119.7°119.6°
O4'C1'N1C2170.4°52.9°
O4'C1'C2'C3'17.1°2.0°
O4'C1'C2'H2'1102.1°120.8°
O4'C1'C2'H2'2136.3°116.7°
C1'O4'C4'H4'96.7°78.4°
C5MC5C6C4179.7°179.5°
C5MC5C6N1179.4°179.8°
C5MC5C4O40.2°0.0°
C5MC5C4N3179.7°180.0°
C5MC5C6H60.5°0.5°
C5C5MH52H53120.0°120.0°
C5C5MH52H51120.0°120.0°
C5C5MH53H51120.0°120.0°
C4'C3'C2'C1'29.8°20.9°
C4'C3'C2'O3'121.4°118.2°
C4'C3'C2'H3'116.1°118.3°
C4'C3'O3'H3'121.6°123.7°
C4'C3'C2'H2'189.3°97.8°
C4'C3'C2'H2'2149.0°139.6°
C3'C4'C5'H5'139.3°55.0°
C3'C4'C5'H5'282.5°65.0°
C4'C3'O3'HO3'180.0°174.2°
C5C6N1H6180.0°179.2°
C5C6N1C1'179.8°179.4°
C5C6N1C20.5°0.5°
C6C5C4O4179.9°179.4°
C6C5C4N30.0°0.5°
C6C5C5MH52180.0°179.5°
C6C5C5MH5360.0°60.6°
C6C5C5MH5160.0°59.4°
N1C6C5C40.3°0.8°
C6N1C1'C2179.7°179.9°
C6N1C1'C2'106.6°115.0°
C6N1C2N30.5°0.0°
C6N1C2O2179.4°179.8°
C6N1C1'H1'131.9°6.0°
C5C4O4N3179.9°179.9°
C5C4N3C20.1°0.0°
C4C5C6H6179.7°180.0°
C4C5C5MH520.3°0.0°
C4C5C5MH53120.3°120.0°
C4C5C5MH51119.7°120.1°
C5C4N3HN3179.9°180.0°
N1C1'C2'H1'121.9°121.0°
N1C1'C2'C3'101.4°121.4°
C1'N1C2N3179.8°180.0°
C1'N1C2O20.9°0.3°
N1C1'C2'H2'1139.4°119.8°
N1C1'C2'H2'217.8°2.7°
C1'N1C6H60.2°0.2°
C2'C1'N1C273.6°65.0°
C1'C2'C3'H2'1119.2°118.7°
C1'C2'C3'H2'2119.2°118.7°
C1'C2'C3'O3'151.2°139.1°
C1'C2'H2'1H2'2122.4°122.5°
C1'C2'C3'H3'86.3°97.4°
N1C2N3C40.2°0.3°
N1C2N3O2179.0°179.8°
C2N1C1'H1'47.8°174.0°
C2N1C6H6179.5°179.7°
N1C2N3HN3179.8°179.7°
C2'C3'O3'H3'122.0°123.6°
C3'C2'C1'H1'136.8°117.6°
C3'C2'H2'1H2'2122.4°122.7°
C2'C3'C4'H4'87.8°81.4°
C2'C3'O3'HO3'63.6°61.5°
O3'C3'C2'H2'132.0°20.4°
O3'C3'C2'H2'289.6°102.2°
O3'C3'C4'H4'34.1°36.7°
O4C4N3C2179.9°180.0°
O4C4N3HN30.1°0.0°
C4N3C2HN3180.0°180.0°
C4N3C2O2179.2°179.9°
O2C2N3HN30.8°0.1°
H1'C1'C2'H2'117.6°1.1°
H1'C1'C2'H2'2104.0°123.6°
H5A1C5AH5A2H5A3120.0°120.1°
H2'1C2'C3'H3'154.6°143.9°
H2'2C2'C3'H3'32.9°21.3°
H3'C3'C4'H4'156.1°160.3°
H3'C3'O3'HO3'58.4°62.1°
H4'C4'C5'H5'1161.1°67.9°
H4'C4'C5'H5'239.3°172.1°
H5'1C5'N5'HN5'173.0°120.0°
H5'2C5'N5'HN5'65.1°120.0°
H52C5MH53H51120.0°120.0°
H2C11C3'1H3'165.6°177.2°
H3C11C3'1H3'1173.5°62.8°
HOP2OP2POP394.3°60.1°
H1C1'1C2'1HC22110.2°1.1°
H1C1'1C2'1HC2111.1°123.6°
HC22C2'1C3'1H3'128.3°144.0°
HC21C2'1C3'1H3'1149.6°21.5°
H3'1C3'1C4'1HC41154.9°160.3°
HC41C4'1C5'1HC5165.7°176.5°
HC41C4'1C5'1HC5254.5°63.5°

222415

PDB entries from 2024-07-10

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