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05H

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2C2doub1.22Å1.25Å
N3C2sing1.35Å1.33Å
N3C4sing1.35Å1.32Å
O4C4doub1.22Å1.24Å
C2N1sing1.34Å1.42Å
C4C5sing1.42Å1.47Å
O3'C3'sing1.43Å1.44Å
C2'C3'sing1.55Å1.51Å
C2'C1'sing1.54Å1.52Å
C3'C4'sing1.55Å1.50Å
N1C1'sing1.47Å1.47Å
N1C6sing1.37Å1.33Å
C5C6doub1.35Å1.37Å
C5C5Msing1.51Å1.50Å
C1'O4'sing1.44Å1.43Å
C4'O4'sing1.44Å1.43Å
C4'C5'sing1.53Å1.51Å
C5'N5'sing1.46Å1.44Å
O41C41doub1.22Å1.24Å
C41N31sing1.35Å1.33Å
C41C51sing1.42Å1.47Å
N31C21sing1.35Å1.33Å
O1C1doub1.21Å1.22Å
N5'C1sing1.35Å1.32Å
O21C21doub1.22Å1.24Å
C21N11sing1.35Å1.41Å
C51C5Asing1.51Å1.50Å
C51C61doub1.35Å1.37Å
C1C11sing1.51Å1.50Å
N11C61sing1.37Å1.33Å
N11C1'1sing1.46Å1.46Å
C2'1C3'1sing1.57Å1.49Å
C2'1C1'1sing1.56Å1.51Å
C2'1O2'sing1.46Å1.42Å
C11C3'1sing1.53Å1.51Å
C3'1C4'1sing1.57Å1.50Å
C1'1O4'1sing1.45Å1.43Å
O2'C3sing1.44Å1.43Å
O4'1C4'1sing1.46Å1.42Å
C4'1C3sing1.56Å1.51Å
C4'1C5'1sing1.53Å1.51Å
O5'C5'1sing1.43Å1.42Å
O5'Psing1.61Å1.60Å
OP2Psing1.61Å1.61Å
POP1doub1.48Å1.47Å
C1'H1'sing1.09Å1.10Å
C5AH5A1sing1.09Å1.10Å
C5AH5A2sing1.09Å1.10Å
C5AH5A3sing1.09Å1.10Å
C2'H2'1sing1.09Å1.10Å
C2'H2'2sing1.09Å1.10Å
C3HC31sing1.09Å1.10Å
C3HC32sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C6H6sing1.08Å1.08Å
C61H61sing1.08Å1.08Å
C5MH52sing1.09Å1.10Å
C5MH53sing1.09Å1.10Å
N3HN3sing0.97Å1.00Å
N31H31sing0.97Å1.00Å
N5'HN5'sing0.97Å1.00Å
O3'HO3'sing0.97Å0.95Å
OP2HOP2sing0.97Å0.95Å
C1'1H1sing1.09Å1.10Å
C2'1HC21sing1.09Å1.10Å
POP3sing1.61Å24.64Å
OP3HOP3sing0.97Å0.00Å
C11H2sing1.09Å1.10Å
C11H3sing1.09Å1.10Å
C3'1H3'1sing1.09Å1.10Å
C5'1HC52sing1.09Å1.10Å
C5MH51sing1.09Å1.10Å
C5'1HC51sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2C2N3116.8°119.5°
O2C2N1122.2°119.5°
C2N3C4121.7°120.3°
N3C2N1121.0°120.9°
C2N3HN3119.2°119.9°
N3C4O4120.5°120.3°
N3C4C5118.7°119.4°
C4N3HN3119.1°119.9°
O4C4C5120.8°120.3°
C2N1C1'122.5°119.7°
C2N1C6119.7°120.7°
C4C5C6118.5°119.1°
C4C5C5M121.1°120.5°
O3'C3'C2'114.7°110.5°
O3'C3'C4'111.4°110.5°
O3'C3'H3'109.4°110.6°
C3'O3'HO3'109.5°114.0°
C3'C2'C1'103.5°104.1°
C2'C3'C4'104.0°104.1°
C3'C2'H2'1110.9°110.5°
C3'C2'H2'2110.9°110.5°
C2'C3'H3'108.5°110.5°
C2'C1'N1111.9°110.5°
C2'C1'O4'105.7°104.8°
C2'C1'H1'109.5°110.4°
C1'C2'H2'1111.0°110.5°
C1'C2'H2'2111.0°110.5°
C3'C4'O4'104.6°104.8°
C3'C4'C5'109.2°110.3°
C4'C3'H3'108.6°110.5°
C3'C4'H4'110.2°110.4°
C1'N1C6117.8°119.6°
N1C1'O4'108.7°110.4°
N1C1'H1'110.2°110.3°
N1C6C5120.5°119.6°
N1C6H6119.8°120.2°
C6C5C5M120.5°120.4°
C5C6H6119.8°120.1°
C5C5MH52109.5°109.4°
C5C5MH53109.5°109.5°
C5C5MH51109.5°109.5°
C1'O4'C4'111.5°105.3°
O4'C1'H1'110.7°110.4°
O4'C4'C5'111.3°110.4°
O4'C4'H4'111.3°110.4°
C4'C5'N5'103.3°109.4°
C5'C4'H4'110.1°110.4°
C4'C5'H5'1111.0°109.5°
C4'C5'H5'2111.0°109.5°
C5'N5'C1125.8°120.0°
N5'C5'H5'1111.0°109.5°
N5'C5'H5'2111.0°109.5°
C5'N5'HN5'117.1°120.0°
O41C41N31120.1°120.3°
O41C41C51121.0°120.3°
N31C41C51118.9°119.4°
C41N31C21121.2°120.3°
C41N31H31119.4°119.8°
C41C51C5A121.8°120.5°
C41C51C61118.4°119.1°
N31C21O21118.6°119.5°
N31C21N11121.4°120.9°
C21N31H31119.4°119.9°
O1C1N5'123.3°120.0°
O1C1C11120.8°120.0°
N5'C1C11115.9°120.0°
C1N5'HN5'117.1°120.0°
O21C21N11120.1°119.6°
C21N11C61120.1°120.6°
C21N11C1'1119.3°119.7°
C5AC51C61119.8°120.5°
C51C5AH5A1109.5°109.5°
C51C5AH5A2109.5°109.5°
C51C5AH5A3109.5°109.5°
C51C61N11120.1°119.7°
C51C61H61119.9°120.1°
C1C11C3'1104.9°109.5°
C1C11H2110.6°109.5°
C1C11H3110.6°109.5°
C61N11C1'1120.6°119.8°
N11C61H61119.9°120.1°
N11C1'1C2'1112.4°110.3°
N11C1'1O4'1111.1°110.2°
N11C1'1H1110.4°110.3°
C3'1C2'1C1'1102.5°99.1°
C3'1C2'1O2'102.0°101.2°
C2'1C3'1C11113.0°112.5°
C2'1C3'1C4'191.7°93.2°
C3'1C2'1HC21114.9°116.7°
C2'1C3'1H3'1112.0°112.5°
C1'1C2'1O2'104.7°103.7°
C2'1C1'1O4'1102.0°105.3°
C2'1C1'1H1109.7°110.3°
C1'1C2'1HC21114.6°116.5°
C2'1O2'C3106.7°107.0°
O2'C2'1HC21116.4°117.0°
C11C3'1C4'1114.8°112.5°
C3'1C11H2110.6°109.5°
C3'1C11H3110.6°109.5°
C11C3'1H3'1111.8°112.1°
C3'1C4'1O4'1101.7°101.2°
C3'1C4'1C3101.9°99.0°
C3'1C4'1C5'1114.1°116.7°
C4'1C3'1H3'1112.0°112.6°
C1'1O4'1C4'1106.2°106.9°
O4'1C1'1H1111.0°110.2°
O2'C3C4'1101.5°105.4°
O2'C3HC31111.4°110.3°
O2'C3HC32111.5°110.3°
O4'1C4'1C3106.4°103.7°
O4'1C4'1C5'1113.9°116.9°
C3C4'1C5'1117.1°116.6°
C4'1C3HC31111.4°110.3°
C4'1C3HC32111.4°110.2°
C4'1C5'1O5'107.4°109.5°
C4'1C5'1HC52110.0°109.5°
C4'1C5'1HC51110.0°109.4°
C5'1O5'P119.3°123.0°
O5'C5'1HC52110.0°109.5°
O5'C5'1HC51110.0°109.4°
O5'POP2113.4°109.5°
O5'POP1110.6°109.5°
O5'POP353.3°109.5°
OP2POP1111.1°109.4°
POP2HOP2109.5°114.0°
OP2POP3104.0°109.5°
OP1POP366.3°109.4°
H5A1C5AH5A2109.4°109.5°
H5A1C5AH5A3109.5°109.4°
H5A2C5AH5A3109.5°109.5°
H2'1C2'H2'2109.4°110.5°
HC31C3HC32109.4°110.3°
H5'1C5'H5'2109.4°109.5°
H52C5MH53109.4°109.4°
H52C5MH51109.5°109.5°
H53C5MH51109.5°109.5°
POP3HOP390.0°113.9°
H2C11H3109.5°109.5°
HC52C5'1HC51109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2C2N3N1179.8°179.8°
O2C2N3C4179.9°179.7°
O2C2N1C1'0.0°0.3°
O2C2N1C6179.4°179.7°
O2C2N3HN30.1°0.2°
C2N3C4HN3180.0°180.0°
C2N3C4O4179.7°180.0°
C2N3C4C50.1°0.0°
N3C2N1C1'179.8°180.0°
N3C2N1C60.4°0.0°
N3C4O4C5179.8°179.9°
C4N3C2N10.1°0.0°
N3C4C5C60.4°0.0°
N3C4C5C5M179.6°180.0°
O4C4C5C6179.8°180.0°
O4C4C5C5M0.2°0.1°
O4C4N3HN30.2°0.0°
C2N1C1'C2'66.4°61.9°
C2N1C1'C6179.4°180.0°
C2N1C6C50.8°0.0°
C2N1C1'O4'177.1°53.5°
C2N1C1'H1'55.6°175.8°
C2N1C6H6179.2°180.0°
N1C2N3HN3179.9°180.0°
C4C5C6N10.8°0.0°
C4C5C6C5M180.0°180.0°
C4C5C6H6179.2°180.0°
C4C5C5MH52180.0°0.0°
C4C5C5MH5360.0°119.9°
C5C4N3HN3179.9°180.0°
C4C5C5MH5160.0°120.0°
O3'C3'C2'C4'121.9°118.7°
O3'C3'C2'H3'122.6°122.7°
O3'C3'C2'C1'153.4°118.6°
O3'C3'C4'H3'120.5°122.7°
O3'C3'C4'O4'155.1°142.6°
O3'C3'C4'C5'85.7°98.6°
O3'C3'C2'H2'187.5°0.0°
O3'C3'C2'H2'234.3°122.7°
O3'C3'C4'H4'35.4°23.8°
C3'C2'C1'H2'1119.1°118.6°
C3'C2'C1'H2'2119.0°118.7°
C2'C3'C4'H3'115.4°118.6°
C3'C2'C1'N197.6°142.8°
C3'C2'C1'O4'20.7°24.0°
C2'C3'C4'O4'31.0°24.0°
C2'C3'C4'C5'150.3°142.8°
C3'C2'C1'H1'140.0°94.9°
C3'C2'H2'1H2'2122.7°122.7°
C2'C3'C4'H4'88.7°94.9°
C2'C3'O3'HO3'180.0°61.5°
C1'C2'C3'C4'31.5°0.0°
C2'C1'N1O4'116.5°115.4°
C2'C1'N1H1'122.0°122.3°
C2'C1'N1C6114.2°118.1°
C2'C1'O4'H1'118.5°118.9°
C2'C1'O4'C4'1.4°40.5°
C1'C2'H2'1H2'2122.8°122.7°
C1'C2'C3'H3'83.9°118.7°
C3'C4'O4'C1'18.7°40.5°
C3'C4'O4'C5'117.8°118.8°
C3'C4'O4'H4'119.0°118.8°
C3'C4'C5'H4'121.1°122.3°
C3'C4'C5'N5'171.5°175.0°
C4'C3'C2'H2'1150.6°118.7°
C4'C3'C2'H2'287.6°118.7°
C3'C4'C5'H5'169.5°55.0°
C3'C4'C5'H5'252.4°65.0°
C4'C3'O3'HO3'62.2°176.1°
C1'N1C6C5179.8°180.0°
N1C1'O4'H1'121.2°122.2°
N1C1'O4'C4'119.0°159.5°
N1C1'C2'H2'121.5°98.5°
N1C1'C2'H2'2143.4°24.2°
C1'N1C6H60.3°0.0°
N1C6C5H6180.0°180.0°
N1C6C5C5M179.2°180.0°
C6N1C1'O4'2.3°126.5°
C6N1C1'H1'123.8°4.2°
C6C5C5MH520.0°180.0°
C6C5C5MH53120.0°60.0°
C6C5C5MH51120.0°60.0°
C5MC5C6H60.8°0.0°
C5C5MH52H53120.0°120.0°
C5C5MH52H51120.0°120.0°
C5C5MH53H51120.0°120.0°
C1'O4'C4'C5'136.5°159.3°
O4'C1'C2'H2'1139.7°142.6°
O4'C1'C2'H2'298.4°94.7°
C1'O4'C4'H4'100.3°78.3°
O4'C4'C5'H4'123.9°122.4°
O4'C4'C5'N5'56.5°69.6°
C4'O4'C1'H1'119.8°78.3°
O4'C4'C3'H3'84.4°94.7°
O4'C4'C5'H5'1175.5°170.4°
O4'C4'C5'H5'262.5°50.4°
C4'C5'N5'H5'1119.0°120.0°
C4'C5'N5'H5'2119.0°120.0°
C4'C5'N5'C1119.9°180.0°
C5'C4'C3'H3'34.8°24.2°
C4'C5'H5'1H5'2122.9°120.0°
C4'C5'N5'HN5'60.1°0.0°
C5'N5'C1O10.5°0.3°
C5'N5'C1HN5'180.0°180.0°
C5'N5'C1C11179.5°180.0°
N5'C5'C4'H4'67.4°52.7°
N5'C5'H5'1H5'2122.8°120.0°
O41C41N31C51179.5°180.0°
O41C41N31C21179.8°180.0°
O41C41C51C5A0.2°0.1°
O41C41C51C61179.9°180.0°
O41C41N31H310.3°0.0°
C41N31C21H31180.0°180.0°
C41N31C21O21179.7°179.8°
C41N31C21N110.2°0.0°
N31C41C51C5A179.3°180.0°
N31C41C51C610.5°0.0°
C51C41N31C210.2°0.0°
C41C51C5AC61179.9°179.9°
C41C51C61N110.9°0.1°
C41C51C5AH5A1180.0°0.1°
C41C51C5AH5A260.0°120.0°
C41C51C5AH5A360.0°120.0°
C41C51C61H61179.1°180.0°
C51C41N31H31179.8°180.0°
N31C21O21N11179.9°179.7°
N31C21N11C610.6°0.1°
N31C21N11C1'1179.8°180.0°
O1C1N5'C11179.0°179.6°
O1C1C11C3'159.9°0.3°
O1C1N5'HN5'179.5°179.7°
O1C1C11H2179.2°119.7°
O1C1C11H359.4°120.3°
N5'C1C11C3'1119.2°180.0°
C1N5'C5'H5'1121.1°60.0°
C1N5'C5'H5'20.9°60.0°
N5'C1C11H20.1°60.0°
N5'C1C11H3121.6°60.0°
O21C21N11C61179.3°179.8°
O21C21N11C1'10.1°0.3°
O21C21N31H310.3°0.3°
C21N11C61C510.9°0.1°
C21N11C61C1'1179.2°179.9°
C21N11C1'1C2'182.1°85.6°
C21N11C1'1O4'1164.3°158.5°
C21N11C61H61179.1°180.0°
N11C21N31H31179.8°180.0°
C21N11C1'1H140.8°36.5°
C5AC51C61N11179.0°180.0°
C51C5AH5A1H5A2120.0°120.1°
C51C5AH5A1H5A3120.0°119.9°
C51C5AH5A2H5A3120.0°120.0°
C5AC51C61H611.1°0.0°
C51C61N11H61180.0°180.0°
C51C61N11C1'1179.9°180.0°
C61C51C5AH5A10.1°180.0°
C61C51C5AH5A2119.8°60.0°
C61C51C5AH5A3120.2°60.1°
C1C11C3'1C2'174.8°66.5°
C1C11C3'1H2119.3°120.0°
C1C11C3'1H3119.3°120.0°
C1C11C3'1C4'1178.3°170.3°
C11C1N5'HN5'0.5°0.1°
C1C11H2H3122.1°120.0°
C1C11C3'1H3'152.7°61.6°
C61N11C1'1C2'198.7°94.4°
C61N11C1'1O4'114.9°21.5°
C61N11C1'1H1138.4°143.4°
N11C1'1C2'1C3'188.1°86.8°
N11C1'1C2'1O4'1119.1°118.9°
N11C1'1C2'1H1123.2°122.1°
N11C1'1C2'1O2'165.7°169.2°
N11C1'1O4'1H1123.2°122.0°
N11C1'1O4'1C4'1125.8°122.3°
C1'1N11C61H610.1°0.0°
N11C1'1C2'1HC2137.1°39.2°
C3'1C2'1C1'1O2'106.2°103.9°
C3'1C2'1C1'1HC21125.2°126.0°
C3'1C2'1O2'HC21125.9°127.9°
C2'1C3'1C11C4'1103.4°103.8°
C2'1C3'1C11H3'1127.5°128.0°
C2'1C3'1C4'1H3'1114.7°116.1°
C3'1C2'1C1'1O4'131.0°32.1°
C3'1C2'1O2'C338.6°37.8°
C2'1C3'1C4'1O4'156.4°55.1°
C2'1C3'1C4'1C353.4°51.0°
C2'1C3'1C4'1C5'1179.4°177.0°
C3'1C2'1C1'1H1148.7°151.1°
C2'1C3'1C11H244.5°53.6°
C2'1C3'1C11H3165.9°173.6°
C1'1C2'1O2'HC21127.6°129.7°
C1'1C2'1C3'1C11170.2°167.1°
C1'1C2'1C3'1C4'152.2°51.1°
C2'1C1'1O4'1H1116.8°119.0°
C1'1C2'1O2'C367.9°64.6°
C2'1C1'1O4'1C4'15.8°3.3°
C1'1C2'1C3'1H3'162.4°65.1°
O2'C2'1C3'1C1162.0°61.0°
O2'C2'1C3'1C4'156.0°55.0°
O2'C2'1C1'1O4'175.2°71.8°
C2'1O2'C3C4'13.1°3.4°
C2'1O2'C3HC31115.6°115.6°
C2'1O2'C3HC32121.8°122.3°
O2'C2'1C1'1H142.5°47.1°
O2'C2'1C3'1H3'1170.6°171.1°
C11C3'1C4'1H3'1128.9°127.9°
C11C3'1C4'1O4'1172.8°171.1°
C11C3'1C4'1C363.0°65.1°
C11C3'1C4'1C5'164.2°60.9°
C11C3'1C2'1HC2164.9°67.1°
C3'1C11H2H3122.1°120.0°
C3'1C4'1O4'1C1'140.7°37.7°
C3'1C4'1C3O2'33.3°32.0°
C3'1C4'1O4'1C3106.3°102.3°
C3'1C4'1O4'1C5'1123.2°127.8°
C3'1C4'1C3C5'1125.3°126.0°
C3'1C4'1C5'1O5'57.9°175.0°
C3'1C4'1C3HC31152.0°151.0°
C3'1C4'1C3HC3285.4°87.0°
C4'1C3'1C2'1HC21177.2°176.9°
C4'1C3'1C11H259.0°50.2°
C4'1C3'1C11H362.5°69.8°
C3'1C4'1C5'1HC52177.5°64.9°
C3'1C4'1C5'1HC5161.8°55.1°
C1'1O4'1C4'1C365.7°64.6°
C1'1O4'1C4'1C5'1163.9°165.6°
O4'1C1'1C2'1HC21156.1°158.1°
O2'C3C4'1O4'172.9°71.9°
O2'C3C4'1HC31118.7°119.0°
O2'C3C4'1HC32118.7°119.0°
O2'C3C4'1C5'1158.5°158.0°
O2'C3HC31HC32123.7°122.0°
C3O2'C2'1HC21164.5°165.7°
O4'1C4'1C3C5'1128.6°130.0°
O4'1C4'1C5'1O5'58.3°65.1°
O4'1C4'1C3HC3145.8°47.1°
O4'1C4'1C3HC32168.4°169.1°
C4'1O4'1C1'1H1111.0°115.7°
O4'1C4'1C3'1H3'158.3°61.0°
O4'1C4'1C5'1HC5261.3°55.0°
O4'1C4'1C5'1HC51178.0°174.9°
C3C4'1C5'1O5'176.8°58.4°
C4'1C3HC31HC32123.7°122.0°
C3C4'1C3'1H3'1168.1°167.0°
C3C4'1C5'1HC5263.6°178.4°
C3C4'1C5'1HC5157.1°61.6°
C4'1C5'1O5'HC52119.7°120.1°
C4'1C5'1O5'HC51119.7°119.9°
C4'1C5'1O5'P155.3°179.9°
C5'1C4'1C3HC3182.7°83.0°
C5'1C4'1C3HC3239.8°39.1°
C5'1C4'1C3'1H3'164.8°67.0°
C4'1C5'1HC52HC51121.0°120.0°
C5'1O5'POP2172.5°175.0°
C5'1O5'POP146.9°55.0°
C5'1O5'POP382.2°65.0°
O5'C5'1HC52HC51121.0°120.0°
O5'POP2OP1125.3°120.0°
O5'POP2OP355.7°120.1°
O5'POP1OP330.3°120.0°
O5'POP2HOP2125.3°180.0°
O5'POP3HOP390.0°60.1°
PO5'C5'1HC5235.6°60.0°
PO5'C5'1HC5185.1°60.0°
OP2POP1OP396.5°120.0°
OP2POP3HOP390.0°60.0°
OP1POP2HOP20.0°60.0°
OP1POP3HOP390.0°179.9°
H1'C1'C2'H2'1100.9°23.8°
H1'C1'C2'H2'220.9°146.5°
H5A1C5AH5A2H5A3120.0°120.0°
H2'1C2'C3'H3'35.1°122.7°
H2'2C2'C3'H3'157.0°0.0°
H3'C3'C4'H4'155.9°146.5°
H3'C3'O3'HO3'57.8°61.2°
H4'C4'C5'H5'151.6°67.3°
H4'C4'C5'H5'2173.5°172.7°
H5'1C5'N5'HN5'58.9°120.0°
H5'2C5'N5'HN5'179.1°120.0°
H52C5MH53H51120.0°120.0°
HOP2OP2POP369.6°59.9°
H1C1'1C2'1HC2186.2°82.9°
HC21C2'1C3'1H3'162.6°60.8°
H2C11C3'1H3'1172.0°178.4°
H3C11C3'1H3'166.5°58.4°

222415

PDB entries from 2024-07-10

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