02Y
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.45Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| C2 | CA | sing | 1.53Å | 1.52Å | |
| C2 | HB1 | sing | 1.09Å | 1.10Å | |
| C2 | HB2 | sing | 1.09Å | 1.10Å | |
| C3 | C2 | sing | 1.53Å | 1.53Å | |
| C3 | H8 | sing | 1.09Å | 1.10Å | |
| C3 | H9 | sing | 1.09Å | 1.10Å | |
| C4 | C3 | sing | 1.51Å | 1.54Å | |
| O | C | doub | 1.21Å | 1.22Å | |
| O2 | C4 | doub | 1.21Å | 1.23Å | |
| C6 | C4 | sing | 1.51Å | 1.48Å | |
| C6 | N2 | sing | 1.43Å | 1.54Å | |
| C6 | H42 | sing | 1.09Å | 1.10Å | |
| N2 | N3 | trip | 1.03Å | 1.24Å | |
| C6 | H10 | sing | 1.09Å | 1.10Å | |
| C | OXT | sing | 1.34Å | 20.94Å | |
| OXT | HXT | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | C | 112.3° | 109.5° |
| N | CA | HA | 108.9° | 109.5° |
| N | CA | C2 | 108.8° | 109.5° |
| H | N | H2 | 109.4° | 111.0° |
| C | CA | HA | 105.4° | 109.5° |
| C | CA | C2 | 112.1° | 109.5° |
| CA | C | O | 122.5° | 120.0° |
| CA | C | OXT | 130.8° | 120.0° |
| HA | CA | C2 | 109.2° | 109.5° |
| CA | C2 | HB1 | 109.3° | 109.5° |
| CA | C2 | HB2 | 109.3° | 109.5° |
| CA | C2 | C3 | 110.1° | 109.5° |
| HB1 | C2 | HB2 | 109.7° | 109.5° |
| HB1 | C2 | C3 | 109.2° | 109.4° |
| HB2 | C2 | C3 | 109.2° | 109.5° |
| C2 | C3 | H8 | 107.6° | 109.4° |
| C2 | C3 | H9 | 107.6° | 109.5° |
| C2 | C3 | C4 | 115.4° | 109.5° |
| H8 | C3 | H9 | 111.3° | 109.5° |
| H8 | C3 | C4 | 107.5° | 109.5° |
| H9 | C3 | C4 | 107.5° | 109.5° |
| C3 | C4 | O2 | 120.3° | 120.0° |
| C3 | C4 | C6 | 117.7° | 120.0° |
| O | C | OXT | 105.9° | 120.0° |
| O2 | C4 | C6 | 122.0° | 120.0° |
| C4 | C6 | N2 | 135.8° | 109.4° |
| C4 | C6 | H42 | 101.5° | 109.4° |
| C4 | C6 | H10 | 101.4° | 109.5° |
| N2 | C6 | H42 | 101.5° | 109.5° |
| C6 | N2 | N3 | 165.0° | 179.9° |
| N2 | C6 | H10 | 101.5° | 109.5° |
| H42 | C6 | H10 | 116.2° | 109.5° |
| C | OXT | HXT | 90.0° | 117.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | C | HA | 118.5° | 120.0° |
| N | CA | C | C2 | 122.9° | 120.0° |
| N | CA | HA | C2 | 118.7° | 120.0° |
| N | CA | C2 | HB1 | 120.3° | 55.0° |
| N | CA | C2 | HB2 | 119.7° | 175.0° |
| N | CA | C2 | C3 | 0.3° | 65.0° |
| N | CA | C | O | 36.9° | 20.0° |
| N | CA | C | OXT | 131.2° | 160.0° |
| H | N | CA | C | 180.0° | 64.0° |
| H | N | CA | HA | 63.6° | 56.0° |
| H | N | CA | C2 | 55.3° | 176.0° |
| H2 | N | CA | C | 60.0° | 60.0° |
| H2 | N | CA | HA | 56.4° | 180.0° |
| H2 | N | CA | C2 | 175.3° | 60.0° |
| C | CA | HA | C2 | 120.6° | 120.0° |
| C | CA | C2 | HB1 | 4.5° | 65.0° |
| C | CA | C2 | HB2 | 115.5° | 55.0° |
| C | CA | C2 | C3 | 124.5° | 175.0° |
| CA | C | O | OXT | 170.6° | 180.0° |
| CA | C | OXT | HXT | 90.0° | 180.0° |
| HA | CA | C2 | HB1 | 121.0° | 175.0° |
| HA | CA | C2 | HB2 | 0.9° | 65.0° |
| HA | CA | C2 | C3 | 119.0° | 55.0° |
| HA | CA | C | O | 155.3° | 140.0° |
| HA | CA | C | OXT | 12.7° | 40.0° |
| CA | C2 | HB1 | HB2 | 119.8° | 120.0° |
| CA | C2 | HB1 | C3 | 120.5° | 120.0° |
| CA | C2 | HB2 | C3 | 120.5° | 120.0° |
| CA | C2 | C3 | H8 | 56.1° | 60.0° |
| CA | C2 | C3 | H9 | 63.9° | 60.0° |
| CA | C2 | C3 | C4 | 176.1° | 180.0° |
| C2 | CA | C | O | 86.0° | 100.0° |
| C2 | CA | C | OXT | 106.0° | 80.0° |
| HB1 | C2 | HB2 | C3 | 119.7° | 119.9° |
| HB1 | C2 | C3 | H8 | 176.1° | 180.0° |
| HB1 | C2 | C3 | H9 | 56.1° | 60.0° |
| HB1 | C2 | C3 | C4 | 63.9° | 60.0° |
| HB2 | C2 | C3 | H8 | 63.9° | 60.0° |
| HB2 | C2 | C3 | H9 | 176.1° | 180.0° |
| HB2 | C2 | C3 | C4 | 56.1° | 60.0° |
| C2 | C3 | H8 | H9 | 117.6° | 120.0° |
| C2 | C3 | H8 | C4 | 124.9° | 120.0° |
| C2 | C3 | H9 | C4 | 124.9° | 120.0° |
| C2 | C3 | C4 | O2 | 118.0° | 0.0° |
| C2 | C3 | C4 | C6 | 64.1° | 180.0° |
| H8 | C3 | H9 | C4 | 117.5° | 120.0° |
| H8 | C3 | C4 | O2 | 122.0° | 120.0° |
| H8 | C3 | C4 | C6 | 55.9° | 60.0° |
| H9 | C3 | C4 | O2 | 2.1° | 120.0° |
| H9 | C3 | C4 | C6 | 175.8° | 60.0° |
| C3 | C4 | O2 | C6 | 177.8° | 179.9° |
| C3 | C4 | C6 | N2 | 167.6° | 180.0° |
| C3 | C4 | C6 | H42 | 72.4° | 60.0° |
| C3 | C4 | C6 | H10 | 47.6° | 59.9° |
| O | C | OXT | HXT | 90.0° | 0.0° |
| O2 | C4 | C6 | N2 | 10.3° | 0.0° |
| O2 | C4 | C6 | H42 | 109.7° | 120.0° |
| O2 | C4 | C6 | H10 | 130.3° | 120.0° |
| C4 | C6 | N2 | H42 | 120.0° | 119.9° |
| C4 | C6 | N2 | H10 | 120.0° | 120.0° |
| C4 | C6 | H42 | H10 | 109.0° | 120.0° |
| C4 | C6 | N2 | N3 | 28.0° | 142.4° |
| N2 | C6 | H42 | H10 | 109.0° | 120.1° |
| H42 | C6 | N2 | N3 | 148.0° | 22.5° |
| N3 | N2 | C6 | H10 | 92.0° | 97.6° |
