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Summary Geometry Related PDB entries

01F

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C	O	doub	1.21Å	1.21Å
C	O1	sing	1.35Å	1.33Å
O1	C1	sing	1.45Å	1.42Å
C1	C2	sing	1.53Å	1.54Å
C1	H241	sing	1.09Å	1.10Å
C1	H242	sing	1.09Å	1.10Å
C2	H251	sing	1.09Å	1.10Å
C2	H252	sing	1.09Å	1.10Å
C2	H253	sing	1.09Å	1.10Å
C	OXT	sing	1.35Å	34.44Å
OXT	HXT	sing	0.97Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O	C	O1	126.5°	120.0°
O	C	OXT	109.9°	120.0°
C	O1	C1	132.6°	117.0°
O1	C	OXT	88.1°	119.9°
O1	C1	C2	110.2°	109.5°
O1	C1	H241	109.2°	109.5°
O1	C1	H242	109.2°	109.5°
C2	C1	H241	109.2°	109.5°
C2	C1	H242	109.2°	109.4°
C1	C2	H251	109.5°	109.5°
C1	C2	H252	109.4°	109.5°
C1	C2	H253	109.5°	109.5°
H241	C1	H242	109.7°	109.5°
H251	C2	H252	109.5°	109.5°
H251	C2	H253	109.4°	109.5°
H252	C2	H253	109.5°	109.5°
C	OXT	HXT	90.0°	117.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O	C	O1	OXT	113.5°	179.7°
O	C	O1	C1	85.7°	0.0°
O	C	OXT	HXT	90.0°	0.0°
C	O1	C1	C2	156.6°	180.0°
C	O1	C1	H241	83.4°	60.0°
C	O1	C1	H242	36.6°	60.0°
O1	C	OXT	HXT	90.0°	179.7°
O1	C1	C2	H241	120.0°	120.0°
O1	C1	C2	H242	120.0°	120.0°
O1	C1	H241	H242	119.7°	120.1°
O1	C1	C2	H251	180.0°	60.0°
O1	C1	C2	H252	60.0°	60.0°
O1	C1	C2	H253	60.0°	180.0°
C1	O1	C	OXT	27.8°	179.7°
C2	C1	H241	H242	119.7°	119.9°
C1	C2	H251	H252	120.0°	120.0°
C1	C2	H251	H253	120.0°	120.0°
C1	C2	H252	H253	120.0°	120.0°
H241	C1	C2	H251	60.0°	180.0°
H241	C1	C2	H252	180.0°	60.0°
H241	C1	C2	H253	60.0°	60.0°
H242	C1	C2	H251	60.0°	60.0°
H242	C1	C2	H252	60.0°	180.0°
H242	C1	C2	H253	180.0°	60.0°
H251	C2	H252	H253	120.0°	120.1°

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PDB entries from 2024-09-04

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