PRD_900112

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O3'	sing	1.43Å	1.44Å
C1	C2	sing	1.53Å	1.55Å
C1	O5	sing	1.43Å	1.47Å
C2	C3	sing	1.53Å	1.55Å
C2	O2	sing	1.43Å	1.43Å
C3	O3	sing	1.43Å	1.44Å
C3	C4	sing	1.53Å	1.54Å
C4	O4	sing	1.43Å	1.43Å
C4	C5	sing	1.53Å	1.54Å
C5	C6	sing	1.53Å	1.53Å
C5	O5	sing	1.43Å	1.46Å
C6	O6	sing	1.43Å	1.43Å
C1'	O5'	sing	1.43Å	1.47Å
C1'	C2'	sing	1.53Å	1.55Å
C1'	O1'	sing	1.43Å	1.43Å
C2'	O2'	sing	1.43Å	1.43Å
C2'	C3'	sing	1.53Å	1.55Å
C3'	O3'	sing	1.43Å	1.44Å
C3'	C4'	sing	1.53Å	1.54Å
C4'	O4'	sing	1.43Å	1.43Å
C4'	C5'	sing	1.53Å	1.55Å
C5'	O5'	sing	1.43Å	1.46Å
C5'	C6'	sing	1.53Å	1.53Å
C6'	O6'	sing	1.43Å	1.43Å
C1	H1	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
C3	H3	sing	1.09Å	1.10Å
C4	H4	sing	1.09Å	1.10Å
C5	H5	sing	1.09Å	1.10Å
C6	H6	sing	1.09Å	1.10Å
C6	H6A	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å
O4	HO4	sing	0.97Å	0.95Å
O6	HO6	sing	0.97Å	0.95Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	H2'	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C5'	H5'	sing	1.09Å	1.10Å
C6'	H6'	sing	1.09Å	1.10Å
C6'	H6'A	sing	1.09Å	1.10Å
O1'	HO1'	sing	0.97Å	0.95Å
O2'	HO2'	sing	0.97Å	0.95Å
O4'	HO4'	sing	0.97Å	0.95Å
O6'	HO6'	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3'	C1	C2	108.5°	109.6°
O3'	C1	O5	109.9°	109.5°
C1	O3'	C3'	110.3°	114.0°
O3'	C1	H1	110.0°	109.5°
C2	C1	O5	110.1°	109.4°
C1	C2	C3	107.7°	109.1°
C1	C2	O2	109.3°	109.6°
C2	C1	H1	108.6°	109.5°
C1	C2	H2	109.3°	109.5°
C1	O5	C5	111.5°	114.1°
O5	C1	H1	109.7°	109.4°
C3	C2	O2	110.0°	109.6°
C2	C3	O3	110.0°	109.5°
C2	C3	C4	108.8°	109.0°
C3	C2	H2	109.4°	109.5°
C2	C3	H3	108.8°	109.6°
O2	C2	H2	111.0°	109.6°
C2	O2	HO2	109.5°	114.0°
O3	C3	C4	109.9°	109.5°
O3	C3	H3	110.4°	109.5°
C3	O3	HO3	109.5°	114.0°
C3	C4	O4	109.4°	109.5°
C3	C4	C5	108.9°	109.1°
C4	C3	H3	109.0°	109.6°
C3	C4	H4	109.1°	109.6°
O4	C4	C5	109.9°	109.5°
O4	C4	H4	110.6°	109.5°
C4	O4	HO4	109.5°	114.0°
C4	C5	C6	108.9°	109.4°
C4	C5	O5	110.0°	109.4°
C5	C4	H4	109.0°	109.6°
C4	C5	H5	109.2°	109.5°
C6	C5	O5	109.1°	109.5°
C5	C6	O6	109.9°	109.4°
C6	C5	H5	109.3°	109.5°
C5	C6	H6	109.4°	109.5°
C5	C6	H6A	109.3°	109.5°
O5	C5	H5	110.3°	109.5°
O6	C6	H6	109.4°	109.5°
O6	C6	H6A	109.4°	109.5°
C6	O6	HO6	109.5°	114.0°
O5'	C1'	C2'	109.9°	109.4°
O5'	C1'	O1'	109.5°	109.5°
C1'	O5'	C5'	111.4°	114.1°
O5'	C1'	H1'	109.2°	109.5°
C2'	C1'	O1'	110.2°	109.5°
C1'	C2'	O2'	109.7°	109.5°
C1'	C2'	C3'	108.5°	109.2°
C2'	C1'	H1'	108.2°	109.5°
C1'	C2'	H2'	109.2°	109.5°
O1'	C1'	H1'	109.7°	109.5°
C1'	O1'	HO1'	109.5°	114.0°
O2'	C2'	C3'	109.3°	109.5°
O2'	C2'	H2'	110.8°	109.5°
C2'	O2'	HO2'	109.5°	114.0°
C2'	C3'	O3'	110.5°	109.6°
C2'	C3'	C4'	108.2°	109.1°
C3'	C2'	H2'	109.2°	109.6°
C2'	C3'	H3'	109.2°	109.5°
O3'	C3'	C4'	109.0°	109.6°
O3'	C3'	H3'	110.6°	109.6°
C3'	C4'	O4'	109.0°	109.5°
C3'	C4'	C5'	108.6°	109.2°
C4'	C3'	H3'	109.2°	109.6°
C3'	C4'	H4'	109.2°	109.6°
O4'	C4'	C5'	110.2°	109.5°
O4'	C4'	H4'	110.7°	109.5°
C4'	O4'	HO4'	109.5°	114.0°
C4'	C5'	O5'	109.9°	109.4°
C4'	C5'	C6'	108.8°	109.5°
C5'	C4'	H4'	109.1°	109.5°
C4'	C5'	H5'	109.3°	109.5°
O5'	C5'	C6'	109.0°	109.5°
O5'	C5'	H5'	110.4°	109.5°
C5'	C6'	O6'	109.5°	109.5°
C6'	C5'	H5'	109.4°	109.5°
C5'	C6'	H6'	109.5°	109.5°
C5'	C6'	H6'A	109.5°	109.5°
O6'	C6'	H6'	109.5°	109.5°
O6'	C6'	H6'A	109.5°	109.5°
C6'	O6'	HO6'	109.5°	114.0°
H6	C6	H6A	109.5°	109.5°
H6'	C6'	H6'A	109.4°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3'	C1	C2	O5	120.3°	120.0°
O3'	C1	C2	H1	119.5°	120.1°
O3'	C1	O5	H1	121.1°	120.0°
O3'	C1	C2	C3	60.6°	62.3°
O3'	C1	C2	O2	179.8°	177.7°
O3'	C1	O5	C5	57.8°	58.9°
C1	O3'	C3'	C2'	92.3°	90.0°
C1	O3'	C3'	C4'	148.9°	150.4°
O3'	C1	C2	H2	58.2°	57.5°
C1	O3'	C3'	H3'	28.7°	30.2°
C2	C1	O5	H1	119.4°	120.0°
C1	C2	C3	O2	119.1°	120.0°
C1	C2	C3	H2	118.8°	119.8°
C1	C2	O2	H2	120.7°	120.2°
C1	C2	C3	O3	179.3°	176.9°
C1	C2	C3	C4	58.9°	57.1°
C2	C1	O5	C5	61.6°	61.2°
C2	C1	O3'	C3'	155.1°	170.0°
C1	C2	C3	H3	59.7°	62.9°
C1	C2	O2	HO2	180.0°	59.9°
O5	C1	C2	C3	59.7°	57.7°
O5	C1	C2	O2	59.8°	62.3°
C1	O5	C5	C4	61.0°	61.2°
C1	O5	C5	C6	179.6°	178.9°
O5	C1	O3'	C3'	84.5°	70.0°
O5	C1	C2	H2	178.5°	177.5°
C1	O5	C5	H5	59.5°	58.8°
C3	C2	O2	H2	121.2°	120.1°
C2	C3	O3	C4	119.7°	119.5°
C2	C3	O3	H3	120.1°	120.2°
C2	C3	C4	H3	118.5°	120.0°
C2	C3	C4	O4	179.1°	176.9°
C2	C3	C4	C5	59.0°	57.0°
C3	C2	C1	H1	179.9°	177.6°
C2	C3	C4	H4	59.9°	62.9°
C3	C2	O2	HO2	61.8°	179.7°
C2	C3	O3	HO3	180.0°	60.1°
O2	C2	C3	O3	60.2°	56.9°
O2	C2	C3	C4	60.2°	62.9°
O2	C2	C1	H1	60.3°	57.6°
O2	C2	C3	H3	178.8°	177.1°
O3	C3	C4	H3	121.1°	120.2°
O3	C3	C4	O4	60.5°	63.3°
O3	C3	C4	C5	179.5°	176.8°
O3	C3	C2	H2	62.0°	63.3°
O3	C3	C4	H4	60.6°	56.9°
C3	C4	O4	C5	119.4°	119.6°
C3	C4	O4	H4	120.2°	120.2°
C3	C4	C5	H4	118.9°	120.0°
C3	C4	C5	C6	178.9°	177.6°
C3	C4	C5	O5	59.4°	57.6°
C4	C3	C2	H2	177.6°	176.9°
C3	C4	C5	H5	61.8°	62.4°
C4	C3	O3	HO3	60.2°	179.6°
C3	C4	O4	HO4	180.0°	60.1°
O4	C4	C5	H4	121.3°	120.2°
O4	C4	C5	C6	61.4°	62.5°
O4	C4	C5	O5	179.1°	177.5°
O4	C4	C3	H3	60.6°	56.9°
O4	C4	C5	H5	57.9°	57.5°
C4	C5	C6	O5	120.1°	119.9°
C4	C5	C6	H5	119.2°	120.0°
C4	C5	O5	H5	120.5°	120.0°
C4	C5	C6	O6	179.7°	175.0°
C5	C4	C3	H3	59.5°	63.0°
C4	C5	C6	H6	60.2°	55.0°
C4	C5	C6	H6A	59.7°	65.0°
C5	C4	O4	HO4	60.5°	179.7°
C6	C5	O5	H5	120.1°	120.0°
C5	C6	O6	H6	120.1°	120.0°
C5	C6	O6	H6A	120.0°	120.0°
C6	C5	C4	H4	59.9°	57.7°
C5	C6	H6	H6A	119.8°	120.0°
C5	C6	O6	HO6	180.0°	180.0°
O5	C5	C6	O6	59.7°	65.1°
C5	O5	C1	H1	178.9°	178.9°
O5	C5	C4	H4	59.6°	62.3°
O5	C5	C6	H6	179.7°	174.9°
O5	C5	C6	H6A	60.4°	54.9°
O6	C6	C5	H5	61.0°	55.0°
O6	C6	H6	H6A	119.8°	120.0°
O5'	C1'	C2'	O1'	120.8°	120.0°
O5'	C1'	C2'	H1'	119.2°	120.0°
O5'	C1'	O1'	H1'	119.9°	120.1°
O5'	C1'	C2'	O2'	59.9°	62.3°
O5'	C1'	C2'	C3'	59.5°	57.6°
C1'	O5'	C5'	C4'	61.3°	61.1°
C1'	O5'	C5'	C6'	179.5°	178.8°
O5'	C1'	C2'	H2'	178.4°	177.6°
C1'	O5'	C5'	H5'	59.3°	58.8°
O5'	C1'	O1'	HO1'	180.0°	60.1°
C2'	C1'	O1'	H1'	119.0°	120.0°
C1'	C2'	O2'	C3'	118.9°	119.7°
C1'	C2'	O2'	H2'	120.7°	120.1°
C1'	C2'	C3'	H2'	118.9°	120.0°
C1'	C2'	C3'	O3'	178.4°	176.9°
C1'	C2'	C3'	C4'	59.1°	57.0°
C2'	C1'	O5'	C5'	61.1°	61.1°
C1'	C2'	C3'	H3'	59.8°	63.0°
C2'	C1'	O1'	HO1'	58.9°	179.9°
C1'	C2'	O2'	HO2'	180.0°	60.0°
O1'	C1'	C2'	O2'	179.3°	177.7°
O1'	C1'	C2'	C3'	61.3°	62.4°
O1'	C1'	O5'	C5'	60.2°	58.8°
O1'	C1'	C2'	H2'	57.6°	57.6°
O2'	C2'	C3'	H2'	121.4°	120.1°
O2'	C2'	C3'	O3'	58.7°	56.9°
O2'	C2'	C3'	C4'	60.6°	62.9°
O2'	C2'	C1'	H1'	59.3°	57.7°
O2'	C2'	C3'	H3'	179.4°	177.1°
C2'	C3'	O3'	C4'	118.8°	119.6°
C2'	C3'	O3'	H3'	121.0°	120.1°
C2'	C3'	C4'	H3'	118.8°	119.9°
C2'	C3'	C4'	O4'	179.5°	176.9°
C2'	C3'	C4'	C5'	59.4°	57.0°
C3'	C2'	C1'	H1'	178.7°	177.6°
C2'	C3'	C4'	H4'	59.5°	63.0°
C3'	C2'	O2'	HO2'	61.1°	179.7°
O3'	C3'	C4'	H3'	121.0°	120.2°
O3'	C3'	C4'	O4'	60.3°	63.2°
O3'	C3'	C4'	C5'	179.6°	176.9°
C3'	O3'	C1	H1	36.4°	49.9°
O3'	C3'	C2'	H2'	62.7°	63.2°
O3'	C3'	C4'	H4'	60.8°	56.9°
C3'	C4'	O4'	C5'	119.1°	119.7°
C3'	C4'	O4'	H4'	120.1°	120.2°
C3'	C4'	C5'	H4'	118.9°	120.0°
C3'	C4'	C5'	O5'	60.2°	57.6°
C3'	C4'	C5'	C6'	179.5°	177.6°
C4'	C3'	C2'	H2'	178.0°	176.9°
C3'	C4'	C5'	H5'	61.1°	62.4°
C3'	C4'	O4'	HO4'	180.0°	180.0°
O4'	C4'	C5'	H4'	121.7°	120.1°
O4'	C4'	C5'	O5'	179.6°	177.5°
O4'	C4'	C5'	C6'	61.1°	62.5°
O4'	C4'	C3'	H3'	60.7°	57.0°
O4'	C4'	C5'	H5'	58.3°	57.5°
C4'	C5'	O5'	C6'	119.2°	120.0°
C4'	C5'	O5'	H5'	120.6°	120.0°
C4'	C5'	C6'	H5'	119.3°	120.0°
C4'	C5'	C6'	O6'	179.9°	175.0°
C5'	C4'	C3'	H3'	59.4°	62.9°
C4'	C5'	C6'	H6'	59.9°	55.0°
C4'	C5'	C6'	H6'A	60.1°	65.0°
C5'	C4'	O4'	HO4'	60.9°	60.3°
O5'	C5'	C6'	H5'	120.8°	120.0°
O5'	C5'	C6'	O6'	60.3°	65.0°
C5'	O5'	C1'	H1'	179.7°	178.9°
O5'	C5'	C4'	H4'	58.7°	62.4°
O5'	C5'	C6'	H6'	179.8°	174.9°
O5'	C5'	C6'	H6'A	59.8°	55.0°
C5'	C6'	O6'	H6'	120.0°	120.0°
C5'	C6'	O6'	H6'A	120.0°	120.0°
C6'	C5'	C4'	H4'	60.6°	57.6°
C5'	C6'	H6'	H6'A	120.0°	120.0°
C5'	C6'	O6'	HO6'	180.0°	180.0°
O6'	C6'	C5'	H5'	60.6°	55.0°
O6'	C6'	H6'	H6'A	120.0°	120.0°
H1	C1	C2	H2	61.4°	62.6°
H2	C2	C3	H3	59.0°	56.9°
H2	C2	O2	HO2	59.4°	60.2°
H3	C3	C4	H4	178.4°	177.1°
H3	C3	O3	HO3	60.0°	60.1°
H4	C4	C5	H5	179.2°	177.7°
H4	C4	O4	HO4	59.9°	60.1°
H5	C5	C6	H6	59.0°	65.0°
H5	C5	C6	H6A	178.9°	175.0°
H6	C6	O6	HO6	59.9°	60.0°
H6A	C6	O6	HO6	60.0°	60.0°
H1'	C1'	C2'	H2'	62.3°	62.4°
H1'	C1'	O1'	HO1'	60.1°	60.1°
H2'	C2'	C3'	H3'	59.2°	57.0°
H2'	C2'	O2'	HO2'	59.3°	60.1°
H3'	C3'	C4'	H4'	178.2°	177.1°
H4'	C4'	C5'	H5'	180.0°	177.6°
H4'	C4'	O4'	HO4'	59.9°	59.9°
H5'	C5'	C6'	H6'	59.4°	65.0°
H5'	C5'	C6'	H6'A	179.4°	175.0°
H6'	C6'	O6'	HO6'	60.0°	60.0°
H6'A	C6'	O6'	HO6'	60.0°	60.0°

Release date:	2020-07-29
Last modified:	2020-07-29
Processing site:	RCSB