PRD_900109
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OAT | CAO | sing | 1.43Å | 1.42Å | |
CAU | OAV | sing | 1.43Å | 1.43Å | |
CAU | CAN | sing | 1.53Å | 1.52Å | |
OAR | CAQ | sing | 1.43Å | 1.44Å | |
CAO | CAN | sing | 1.53Å | 1.53Å | |
CAO | CAP | sing | 1.53Å | 1.53Å | |
OAM | CAN | sing | 1.43Å | 1.43Å | |
OAM | CAL | sing | 1.43Å | 1.44Å | |
C2 | O2 | sing | 1.43Å | 1.44Å | |
C2 | C3 | sing | 1.53Å | 1.52Å | |
C2 | C1 | sing | 1.53Å | 1.51Å | |
SAW | CAL | sing | 1.81Å | 1.78Å | |
SAW | C1 | sing | 1.81Å | 1.77Å | |
OAS | CAP | sing | 1.43Å | 1.43Å | |
O3 | C3 | sing | 1.43Å | 1.44Å | |
CAQ | CAL | sing | 1.53Å | 1.53Å | |
CAQ | CAP | sing | 1.53Å | 1.53Å | |
C3 | C4 | sing | 1.53Å | 1.53Å | |
C1 | O5 | sing | 1.43Å | 1.42Å | |
O5 | C5 | sing | 1.43Å | 1.44Å | |
C4 | C5 | sing | 1.53Å | 1.53Å | |
C4 | O4 | sing | 1.43Å | 1.44Å | |
C5 | C6 | sing | 1.53Å | 1.53Å | |
C6 | O6 | sing | 1.43Å | 1.43Å | |
C4 | H1 | sing | 1.09Å | 1.10Å | |
C5 | H2 | sing | 1.09Å | 1.10Å | |
C6 | H3 | sing | 1.09Å | 1.10Å | |
C6 | H4 | sing | 1.09Å | 1.10Å | |
O2 | H5 | sing | 0.97Å | 0.95Å | |
C2 | H6 | sing | 1.09Å | 1.10Å | |
C3 | H7 | sing | 1.09Å | 1.10Å | |
O3 | H8 | sing | 0.97Å | 0.95Å | |
O4 | H9 | sing | 0.97Å | 0.95Å | |
O6 | H10 | sing | 0.97Å | 0.95Å | |
C1 | H11 | sing | 1.09Å | 1.10Å | |
CAL | H12 | sing | 1.09Å | 1.10Å | |
CAN | H13 | sing | 1.09Å | 1.10Å | |
CAU | H14 | sing | 1.09Å | 1.10Å | |
CAU | H15 | sing | 1.09Å | 1.10Å | |
OAV | H16 | sing | 0.97Å | 0.95Å | |
CAO | H17 | sing | 1.09Å | 1.10Å | |
OAT | H18 | sing | 0.97Å | 0.95Å | |
CAP | H19 | sing | 1.09Å | 1.10Å | |
OAS | H20 | sing | 0.97Å | 0.95Å | |
CAQ | H21 | sing | 1.09Å | 1.10Å | |
OAR | H22 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OAT | CAO | CAN | 109.8° | 109.5° |
OAT | CAO | CAP | 110.3° | 109.5° |
OAT | CAO | H17 | 110.2° | 109.6° |
CAO | OAT | H18 | 109.5° | 114.0° |
OAV | CAU | CAN | 109.4° | 109.5° |
OAV | CAU | H14 | 109.5° | 109.5° |
OAV | CAU | H15 | 109.4° | 109.5° |
CAU | OAV | H16 | 109.5° | 114.0° |
CAU | CAN | CAO | 111.4° | 109.5° |
CAU | CAN | OAM | 107.1° | 109.5° |
CAU | CAN | H13 | 109.2° | 109.5° |
CAN | CAU | H14 | 109.5° | 109.5° |
CAN | CAU | H15 | 109.5° | 109.4° |
OAR | CAQ | CAL | 109.8° | 109.6° |
OAR | CAQ | CAP | 111.3° | 109.5° |
OAR | CAQ | H21 | 109.5° | 109.6° |
CAQ | OAR | H22 | 109.5° | 114.0° |
CAN | CAO | CAP | 108.9° | 109.1° |
CAO | CAN | OAM | 109.6° | 109.4° |
CAO | CAN | H13 | 109.1° | 109.4° |
CAN | CAO | H17 | 108.8° | 109.6° |
CAO | CAP | OAS | 110.1° | 109.5° |
CAO | CAP | CAQ | 110.6° | 109.0° |
CAP | CAO | H17 | 108.7° | 109.5° |
CAO | CAP | H19 | 108.1° | 109.5° |
CAN | OAM | CAL | 110.8° | 114.1° |
OAM | CAN | H13 | 110.4° | 109.5° |
OAM | CAL | SAW | 109.7° | 109.5° |
OAM | CAL | CAQ | 112.4° | 109.4° |
OAM | CAL | H12 | 110.0° | 109.5° |
O2 | C2 | C3 | 110.2° | 109.5° |
O2 | C2 | C1 | 109.0° | 109.5° |
C2 | O2 | H5 | 109.5° | 114.0° |
O2 | C2 | H6 | 110.0° | 109.6° |
C3 | C2 | C1 | 109.8° | 109.1° |
C2 | C3 | O3 | 110.0° | 109.6° |
C2 | C3 | C4 | 110.1° | 109.0° |
C3 | C2 | H6 | 108.8° | 109.5° |
C2 | C3 | H7 | 108.6° | 109.5° |
C2 | C1 | SAW | 107.2° | 109.5° |
C2 | C1 | O5 | 109.5° | 109.4° |
C1 | C2 | H6 | 109.0° | 109.5° |
C2 | C1 | H11 | 111.4° | 109.5° |
CAL | SAW | C1 | 101.2° | 103.0° |
SAW | CAL | CAQ | 109.6° | 109.5° |
SAW | CAL | H12 | 106.1° | 109.5° |
SAW | C1 | O5 | 107.3° | 109.5° |
SAW | C1 | H11 | 108.2° | 109.5° |
OAS | CAP | CAQ | 110.3° | 109.6° |
OAS | CAP | H19 | 109.5° | 109.5° |
CAP | OAS | H20 | 109.5° | 114.0° |
O3 | C3 | C4 | 110.1° | 109.6° |
O3 | C3 | H7 | 109.6° | 109.6° |
C3 | O3 | H8 | 109.5° | 114.0° |
CAL | CAQ | CAP | 109.6° | 109.1° |
CAQ | CAL | H12 | 108.7° | 109.5° |
CAL | CAQ | H21 | 108.3° | 109.5° |
CAQ | CAP | H19 | 108.2° | 109.6° |
CAP | CAQ | H21 | 108.3° | 109.5° |
C3 | C4 | C5 | 110.3° | 109.1° |
C3 | C4 | O4 | 110.1° | 109.5° |
C3 | C4 | H1 | 108.4° | 109.6° |
C4 | C3 | H7 | 108.5° | 109.5° |
C1 | O5 | C5 | 109.1° | 114.1° |
O5 | C1 | H11 | 112.9° | 109.5° |
O5 | C5 | C4 | 110.8° | 109.4° |
O5 | C5 | C6 | 109.0° | 109.5° |
O5 | C5 | H2 | 109.9° | 109.5° |
C5 | C4 | O4 | 110.1° | 109.5° |
C4 | C5 | C6 | 109.7° | 109.4° |
C5 | C4 | H1 | 108.4° | 109.6° |
C4 | C5 | H2 | 108.7° | 109.5° |
O4 | C4 | H1 | 109.6° | 109.5° |
C4 | O4 | H9 | 109.5° | 114.0° |
C5 | C6 | O6 | 108.7° | 109.5° |
C6 | C5 | H2 | 108.8° | 109.5° |
C5 | C6 | H3 | 109.7° | 109.5° |
C5 | C6 | H4 | 109.7° | 109.5° |
O6 | C6 | H3 | 109.7° | 109.4° |
O6 | C6 | H4 | 109.6° | 109.5° |
C6 | O6 | H10 | 109.5° | 114.0° |
H3 | C6 | H4 | 109.5° | 109.5° |
H14 | CAU | H15 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OAT | CAO | CAN | CAU | 58.8° | 57.8° |
OAT | CAO | CAN | CAP | 120.9° | 119.9° |
OAT | CAO | CAN | H17 | 120.7° | 120.3° |
OAT | CAO | CAP | H17 | 121.0° | 120.2° |
OAT | CAO | CAN | OAM | 59.6° | 62.3° |
OAT | CAO | CAP | OAS | 57.1° | 57.0° |
OAT | CAO | CAP | CAQ | 65.1° | 62.9° |
OAT | CAO | CAN | H13 | 179.4° | 177.7° |
OAT | CAO | CAP | H19 | 176.7° | 177.2° |
OAV | CAU | CAN | H14 | 120.0° | 120.0° |
OAV | CAU | CAN | H15 | 120.0° | 120.0° |
OAV | CAU | CAN | CAO | 174.9° | 175.0° |
OAV | CAU | CAN | OAM | 65.3° | 65.0° |
OAV | CAU | CAN | H13 | 54.3° | 55.1° |
OAV | CAU | H14 | H15 | 120.0° | 120.0° |
CAU | CAN | CAO | OAM | 118.4° | 120.0° |
CAU | CAN | CAO | H13 | 120.6° | 120.0° |
CAU | CAN | CAO | CAP | 179.6° | 177.6° |
CAU | CAN | OAM | H13 | 118.8° | 120.0° |
CAU | CAN | OAM | CAL | 175.2° | 178.8° |
CAN | CAU | H14 | H15 | 120.0° | 119.9° |
CAN | CAU | OAV | H16 | 180.0° | 179.9° |
CAU | CAN | CAO | H17 | 62.0° | 62.5° |
OAR | CAQ | CAP | CAO | 70.3° | 63.0° |
OAR | CAQ | CAL | OAM | 69.0° | 62.3° |
OAR | CAQ | CAL | SAW | 53.4° | 57.7° |
OAR | CAQ | CAP | OAS | 51.8° | 56.9° |
OAR | CAQ | CAL | CAP | 122.5° | 119.9° |
OAR | CAQ | CAL | H21 | 119.5° | 120.2° |
OAR | CAQ | CAP | H21 | 120.5° | 120.2° |
OAR | CAQ | CAL | H12 | 168.9° | 177.7° |
OAR | CAQ | CAP | H19 | 171.5° | 177.2° |
CAN | CAO | CAP | H17 | 118.4° | 119.9° |
CAO | CAN | OAM | H13 | 120.2° | 120.0° |
CAO | CAN | OAM | CAL | 63.8° | 61.2° |
CAN | CAO | CAP | OAS | 177.8° | 176.9° |
CAN | CAO | CAP | CAQ | 55.6° | 57.0° |
CAO | CAN | CAU | H14 | 65.1° | 55.0° |
CAO | CAN | CAU | H15 | 54.9° | 65.0° |
CAN | CAO | OAT | H18 | 180.0° | 180.0° |
CAN | CAO | CAP | H19 | 62.7° | 62.9° |
CAP | CAO | CAN | OAM | 61.3° | 57.6° |
CAO | CAP | OAS | CAQ | 122.3° | 119.6° |
CAO | CAP | OAS | H19 | 118.7° | 120.1° |
CAO | CAP | CAQ | CAL | 51.3° | 57.0° |
CAO | CAP | CAQ | H19 | 118.2° | 119.8° |
CAP | CAO | CAN | H13 | 59.7° | 62.4° |
CAP | CAO | OAT | H18 | 59.9° | 60.3° |
CAO | CAP | OAS | H20 | 180.0° | 180.0° |
CAO | CAP | CAQ | H21 | 169.3° | 176.8° |
CAN | OAM | CAL | SAW | 177.3° | 178.8° |
CAN | OAM | CAL | CAQ | 60.4° | 61.2° |
CAN | OAM | CAL | H12 | 60.9° | 58.8° |
OAM | CAN | CAU | H14 | 54.7° | 175.0° |
OAM | CAN | CAU | H15 | 174.8° | 55.0° |
OAM | CAN | CAO | H17 | 179.7° | 177.5° |
OAM | CAL | SAW | CAQ | 124.0° | 119.9° |
OAM | CAL | SAW | H12 | 118.8° | 120.0° |
OAM | CAL | SAW | C1 | 68.2° | 65.1° |
OAM | CAL | CAQ | H12 | 122.1° | 120.0° |
OAM | CAL | CAQ | CAP | 53.5° | 57.6° |
CAL | OAM | CAN | H13 | 56.5° | 58.8° |
OAM | CAL | CAQ | H21 | 171.5° | 177.5° |
O2 | C2 | C3 | C1 | 120.1° | 119.9° |
O2 | C2 | C3 | H6 | 120.7° | 120.2° |
O2 | C2 | C1 | H6 | 120.0° | 120.2° |
O2 | C2 | C1 | SAW | 56.8° | 57.7° |
O2 | C2 | C3 | O3 | 54.1° | 57.0° |
O2 | C2 | C3 | C4 | 67.3° | 62.9° |
O2 | C2 | C1 | O5 | 59.4° | 62.3° |
O2 | C2 | C3 | H7 | 174.0° | 177.2° |
O2 | C2 | C1 | H11 | 175.0° | 177.7° |
C3 | C2 | C1 | H6 | 119.1° | 119.9° |
C3 | C2 | C1 | SAW | 177.6° | 177.6° |
C2 | C3 | O3 | C4 | 121.4° | 119.6° |
C2 | C3 | O3 | H7 | 119.3° | 120.2° |
C2 | C3 | C4 | H7 | 118.7° | 119.8° |
C3 | C2 | C1 | O5 | 61.5° | 57.6° |
C2 | C3 | C4 | C5 | 49.9° | 56.9° |
C2 | C3 | C4 | O4 | 71.8° | 62.9° |
C2 | C3 | C4 | H1 | 168.4° | 176.9° |
C3 | C2 | O2 | H5 | 180.0° | 180.0° |
C2 | C3 | O3 | H8 | 180.0° | 60.0° |
C3 | C2 | C1 | H11 | 64.2° | 62.4° |
C2 | C1 | SAW | CAL | 163.8° | 175.0° |
C2 | C1 | SAW | O5 | 117.6° | 119.9° |
C2 | C1 | SAW | H11 | 120.3° | 120.1° |
C1 | C2 | C3 | O3 | 174.2° | 176.9° |
C1 | C2 | C3 | C4 | 52.8° | 57.0° |
C2 | C1 | O5 | H11 | 124.8° | 120.0° |
C2 | C1 | O5 | C5 | 66.7° | 61.2° |
C1 | C2 | O2 | H5 | 59.4° | 60.3° |
C1 | C2 | C3 | H7 | 65.9° | 62.8° |
SAW | CAL | CAQ | H12 | 115.6° | 120.0° |
SAW | CAL | CAQ | CAP | 175.9° | 177.6° |
CAL | SAW | C1 | O5 | 78.6° | 65.1° |
CAL | SAW | C1 | H11 | 43.5° | 55.0° |
SAW | CAL | CAQ | H21 | 66.1° | 62.6° |
C1 | SAW | CAL | CAQ | 167.8° | 175.0° |
SAW | C1 | O5 | H11 | 119.1° | 120.0° |
SAW | C1 | O5 | C5 | 177.2° | 178.8° |
SAW | C1 | C2 | H6 | 63.3° | 62.5° |
C1 | SAW | CAL | H12 | 50.6° | 55.0° |
OAS | CAP | CAQ | CAL | 173.3° | 176.9° |
OAS | CAP | CAQ | H19 | 119.7° | 120.2° |
OAS | CAP | CAO | H17 | 63.8° | 63.1° |
OAS | CAP | CAQ | H21 | 68.7° | 63.2° |
O3 | C3 | C4 | H7 | 120.0° | 120.3° |
O3 | C3 | C4 | C5 | 171.2° | 176.8° |
O3 | C3 | C4 | O4 | 49.6° | 57.0° |
O3 | C3 | C4 | H1 | 70.2° | 63.2° |
O3 | C3 | C2 | H6 | 66.6° | 63.2° |
CAL | CAQ | CAP | H21 | 118.0° | 119.9° |
CAL | CAQ | CAP | H19 | 66.9° | 62.9° |
CAL | CAQ | OAR | H22 | 180.0° | 60.0° |
CAP | CAQ | CAL | H12 | 68.6° | 62.4° |
CAQ | CAP | CAO | H17 | 174.0° | 176.9° |
CAQ | CAP | OAS | H20 | 57.7° | 60.4° |
CAP | CAQ | OAR | H22 | 58.5° | 179.7° |
C3 | C4 | C5 | O5 | 55.6° | 57.6° |
C3 | C4 | C5 | O4 | 121.6° | 119.8° |
C3 | C4 | C5 | H1 | 118.5° | 120.0° |
C3 | C4 | O4 | H1 | 119.1° | 120.2° |
C3 | C4 | C5 | C6 | 175.9° | 177.6° |
C3 | C4 | C5 | H2 | 65.3° | 62.4° |
C4 | C3 | C2 | H6 | 172.0° | 176.9° |
C4 | C3 | O3 | H8 | 58.6° | 179.6° |
C3 | C4 | O4 | H9 | 180.0° | 60.3° |
C1 | O5 | C5 | C4 | 64.0° | 61.2° |
C1 | O5 | C5 | C6 | 175.2° | 178.9° |
C1 | O5 | C5 | H2 | 56.1° | 58.8° |
O5 | C1 | C2 | H6 | 179.4° | 177.5° |
O5 | C5 | C4 | C6 | 120.3° | 120.0° |
O5 | C5 | C4 | H2 | 120.8° | 120.1° |
O5 | C5 | C4 | O4 | 66.1° | 62.2° |
O5 | C5 | C6 | H2 | 119.7° | 120.1° |
O5 | C5 | C6 | O6 | 52.9° | 65.1° |
O5 | C5 | C4 | H1 | 174.1° | 177.6° |
O5 | C5 | C6 | H3 | 172.8° | 175.0° |
O5 | C5 | C6 | H4 | 67.0° | 55.0° |
C5 | O5 | C1 | H11 | 58.0° | 58.8° |
C5 | C4 | O4 | H1 | 119.1° | 120.2° |
C4 | C5 | C6 | H2 | 118.8° | 120.0° |
C4 | C5 | C6 | O6 | 174.4° | 175.0° |
C4 | C5 | C6 | H3 | 65.7° | 55.0° |
C4 | C5 | C6 | H4 | 54.5° | 65.0° |
C5 | C4 | C3 | H7 | 68.8° | 62.9° |
C5 | C4 | O4 | H9 | 58.3° | 180.0° |
O4 | C4 | C5 | C6 | 54.3° | 57.7° |
O4 | C4 | C5 | H2 | 173.1° | 177.7° |
O4 | C4 | C3 | H7 | 169.6° | 177.2° |
C5 | C6 | O6 | H3 | 119.9° | 120.0° |
C5 | C6 | O6 | H4 | 119.9° | 120.0° |
C6 | C5 | C4 | H1 | 65.6° | 62.4° |
C5 | C6 | H3 | H4 | 120.4° | 120.0° |
C5 | C6 | O6 | H10 | 180.0° | 180.0° |
O6 | C6 | C5 | H2 | 66.8° | 55.0° |
O6 | C6 | H3 | H4 | 120.3° | 120.0° |
H1 | C4 | C5 | H2 | 53.2° | 57.6° |
H1 | C4 | C3 | H7 | 49.7° | 57.1° |
H1 | C4 | O4 | H9 | 60.8° | 59.9° |
H2 | C5 | C6 | H3 | 53.1° | 64.9° |
H2 | C5 | C6 | H4 | 173.3° | 175.0° |
H3 | C6 | O6 | H10 | 60.1° | 60.0° |
H4 | C6 | O6 | H10 | 60.1° | 60.0° |
H5 | O2 | C2 | H6 | 60.0° | 59.9° |
H6 | C2 | C3 | H7 | 53.3° | 57.1° |
H6 | C2 | C1 | H11 | 55.0° | 57.5° |
H7 | C3 | O3 | H8 | 60.7° | 60.2° |
H12 | CAL | CAQ | H21 | 49.4° | 57.5° |
H13 | CAN | CAU | H14 | 174.3° | 65.0° |
H13 | CAN | CAU | H15 | 65.6° | 175.0° |
H13 | CAN | CAO | H17 | 58.7° | 57.5° |
H14 | CAU | OAV | H16 | 60.0° | 60.1° |
H15 | CAU | OAV | H16 | 60.1° | 60.0° |
H17 | CAO | OAT | H18 | 60.1° | 59.8° |
H17 | CAO | CAP | H19 | 55.7° | 57.0° |
H19 | CAP | OAS | H20 | 61.2° | 59.9° |
H19 | CAP | CAQ | H21 | 51.0° | 57.0° |
H21 | CAQ | OAR | H22 | 61.2° | 60.2° |