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PRD_900045

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1'C1'sing1.43Å1.42Å
C8NC7Nsing1.53Å1.54Å
C1'C2'sing1.53Å1.54Å
C7NC6Nsing1.53Å1.50Å
C6NC5Nsing1.53Å1.54Å
O2C2sing1.43Å1.43Å
C5NC4Nsing1.53Å1.53Å
C2NC3Nsing1.53Å1.54Å
C2NC1Nsing1.51Å1.51Å
O2'C2'sing1.44Å1.45Å
O2'C5'sing1.45Å1.44Å
C4NC3Nsing1.53Å1.53Å
C1C2sing1.53Å1.56Å
C1O1sing1.43Å1.46Å
C1O5sing1.43Å1.50Å
C2'O1sing1.43Å1.48Å
C2'C3'sing1.54Å1.58Å
C2C3sing1.53Å1.55Å
O6'C1Nsing1.34Å1.38Å
O6'C6'sing1.45Å1.46Å
C1NO1Ndoub1.21Å1.21Å
O5C5sing1.43Å1.49Å
C5'C6'sing1.53Å1.51Å
C5'C4'sing1.55Å1.51Å
C3'O3'sing1.43Å1.42Å
C3'C4'sing1.55Å1.50Å
C3O3sing1.43Å1.43Å
C3C4sing1.53Å1.51Å
C4'O4'sing1.43Å1.44Å
O6C6sing1.43Å1.44Å
C5C4sing1.53Å1.56Å
C5C6sing1.53Å1.51Å
C4O4sing1.43Å1.46Å
C1H1sing1.09Å1.10Å
C2H2sing1.09Å1.10Å
C3H3sing1.09Å1.10Å
C4H4sing1.09Å1.10Å
C5H5sing1.09Å1.10Å
C6H61sing1.09Å1.10Å
C6H62sing1.09Å1.10Å
O2HO2sing0.97Å0.95Å
O3HO3sing0.97Å0.95Å
O4HO4sing0.97Å0.95Å
O6HO6sing0.97Å0.95Å
C1'H1'1sing1.09Å1.10Å
C1'H1'2sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C6'H6'1sing1.09Å1.10Å
C6'H6'2sing1.09Å1.10Å
O1'H1'sing0.97Å0.95Å
O3'H6sing0.97Å0.95Å
O4'H7sing0.97Å0.95Å
C2NH2N1sing1.09Å1.10Å
C2NH2N2sing1.09Å1.10Å
C3NH3N1sing1.09Å1.10Å
C3NH3N2sing1.09Å1.10Å
C4NH4N1sing1.09Å1.10Å
C4NH4N2sing1.09Å1.10Å
C5NH5N1sing1.09Å1.10Å
C5NH5N2sing1.09Å1.10Å
C6NH6N1sing1.09Å1.10Å
C6NH6N2sing1.09Å1.10Å
C7NH7N1sing1.09Å1.10Å
C7NH7N2sing1.09Å1.10Å
C8NH8N1sing1.09Å1.10Å
C8NH8N2sing1.09Å1.10Å
C8NH8N3sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1'C1'C2'111.2°109.4°
O1'C1'H1'1109.1°109.5°
O1'C1'H1'2109.1°109.4°
C1'O1'H1'109.5°114.0°
C8NC7NC6N113.1°109.5°
C8NC7NH7N1108.6°109.5°
C8NC7NH7N2108.6°109.5°
C7NC8NH8N1109.5°109.5°
C7NC8NH8N2109.5°109.5°
C7NC8NH8N3109.4°109.5°
C1'C2'O2'111.9°109.9°
C1'C2'O1108.9°109.9°
C1'C2'C3'115.5°109.8°
C2'C1'H1'1109.0°109.5°
C2'C1'H1'2109.1°109.5°
C7NC6NC5N111.9°109.5°
C7NC6NH6N1108.9°109.5°
C7NC6NH6N2108.9°109.5°
C6NC7NH7N1108.5°109.5°
C6NC7NH7N2108.5°109.5°
C6NC5NC4N114.4°109.4°
C6NC5NH5N1108.2°109.4°
C6NC5NH5N2108.2°109.5°
C5NC6NH6N1108.9°109.5°
C5NC6NH6N2108.8°109.5°
O2C2C1108.2°109.5°
O2C2C3111.5°109.5°
O2C2H2110.2°109.6°
C2O2HO2109.5°114.0°
C5NC4NC3N107.9°109.5°
C5NC4NH4N1109.9°109.5°
C5NC4NH4N2109.9°109.5°
C4NC5NH5N1108.2°109.4°
C4NC5NH5N2108.2°109.5°
C3NC2NC1N104.7°109.5°
C2NC3NC4N118.7°109.5°
C3NC2NH2N1110.7°109.5°
C3NC2NH2N2110.6°109.4°
C2NC3NH3N1107.1°109.5°
C2NC3NH3N2107.1°109.4°
C2NC1NO6'117.0°120.0°
C2NC1NO1N122.3°120.0°
C1NC2NH2N1110.7°109.5°
C1NC2NH2N2110.6°109.4°
C2'O2'C5'107.7°106.8°
O2'C2'O1111.2°109.9°
O2'C2'C3'104.2°107.4°
O2'C5'C6'115.7°110.6°
O2'C5'C4'106.0°103.5°
O2'C5'H5'105.3°110.8°
C4NC3NH3N1107.1°109.5°
C4NC3NH3N2107.1°109.4°
C3NC4NH4N1109.9°109.5°
C3NC4NH4N2109.8°109.5°
C2C1O1109.0°109.5°
C2C1O5108.0°109.4°
C1C2C3109.7°109.2°
C2C1H1109.1°109.5°
C1C2H2108.5°109.5°
O1C1O5110.3°109.5°
C1O1C2'122.2°114.0°
O1C1H1110.5°109.5°
C1O5C5114.0°114.1°
O5C1H1110.0°109.5°
O1C2'C3'104.9°109.8°
C2'C3'O3'112.8°110.5°
C2'C3'C4'102.1°104.2°
C2'C3'H3'109.3°110.5°
C2C3O3108.6°109.6°
C2C3C4108.9°109.0°
C3C2H2108.7°109.5°
C2C3H3108.8°109.5°
C1NO6'C6'107.7°117.0°
O6'C1NO1N120.2°120.0°
O6'C6'C5'123.5°109.5°
O6'C6'H6'1105.9°109.5°
O6'C6'H6'2105.8°109.5°
O5C5C4108.3°109.4°
O5C5C6109.8°109.5°
O5C5H5109.5°109.5°
C6'C5'C4'119.2°110.6°
C6'C5'H5'104.6°110.6°
C5'C6'H6'1105.9°109.5°
C5'C6'H6'2105.9°109.5°
C5'C4'C3'98.2°102.1°
C5'C4'O4'110.4°110.9°
C5'C4'H4'112.3°111.0°
C4'C5'H5'104.6°110.6°
O3'C3'C4'110.4°110.5°
O3'C3'H3'111.6°110.4°
C3'O3'H6109.5°114.0°
C3'C4'O4'109.3°110.9°
C4'C3'H3'110.3°110.6°
C3'C4'H4'112.3°110.9°
O3C3C4110.7°109.6°
O3C3H3110.5°109.6°
C3O3HO3109.5°114.0°
C3C4C5110.5°109.2°
C3C4O4109.3°109.5°
C4C3H3109.3°109.5°
C3C4H4109.1°109.5°
O4'C4'H4'113.4°110.8°
C4'O4'H7109.5°114.0°
O6C6C5110.6°109.5°
O6C6H61109.2°109.5°
O6C6H62109.2°109.5°
C6O6HO6109.5°114.0°
C4C5C6111.4°109.5°
C5C4O4109.5°109.5°
C5C4H4108.6°109.5°
C4C5H5108.7°109.5°
C6C5H5109.3°109.5°
C5C6H61109.2°109.5°
C5C6H62109.2°109.4°
O4C4H4109.8°109.5°
C4O4HO4109.5°114.0°
H61C6H62109.5°109.5°
H1'1C1'H1'2109.5°109.5°
H6'1C6'H6'2109.5°109.4°
H2N1C2NH2N2109.5°109.5°
H3N1C3NH3N2109.5°109.5°
H4N1C4NH4N2109.5°109.4°
H5N1C5NH5N2109.5°109.5°
H6N1C6NH6N2109.5°109.5°
H7N1C7NH7N2109.4°109.5°
H8N1C8NH8N2109.5°109.5°
H8N1C8NH8N3109.5°109.5°
H8N2C8NH8N3109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1'C1'C2'H1'1120.2°120.0°
O1'C1'C2'H1'2120.3°119.9°
O1'C1'C2'O2'56.8°53.2°
O1'C1'C2'O1179.9°67.9°
O1'C1'C2'C3'62.2°171.2°
O1'C1'H1'1H1'2119.2°120.0°
C8NC7NC6NH7N1120.6°120.0°
C8NC7NC6NH7N2120.6°120.0°
C8NC7NC6NC5N179.9°180.0°
C8NC7NC6NH6N159.6°60.0°
C8NC7NC6NH6N259.7°60.0°
C8NC7NH7N1H7N2118.3°120.0°
C7NC8NH8N1H8N2120.0°120.0°
C7NC8NH8N1H8N3120.0°120.0°
C7NC8NH8N2H8N3120.0°120.0°
C1'C2'O2'O1122.1°121.1°
C1'C2'O2'C3'125.4°119.4°
C1'C2'O2'C5'125.6°92.9°
C1'C2'O1C178.0°55.1°
C1'C2'O1C3'124.2°120.9°
C1'C2'C3'O3'90.3°123.9°
C1'C2'C3'C4'151.3°117.4°
C2'C1'H1'1H1'2119.2°120.1°
C1'C2'C3'H3'34.5°1.4°
C2'C1'O1'H1'180.0°180.0°
C7NC6NC5NH6N1120.4°120.0°
C7NC6NC5NH6N2120.4°120.0°
C7NC6NC5NC4N178.0°180.0°
C7NC6NC5NH5N157.2°60.1°
C7NC6NC5NH5N261.3°60.0°
C7NC6NH6N1H6N2118.9°120.0°
C6NC7NH7N1H7N2118.3°120.0°
C6NC7NC8NH8N1180.0°60.0°
C6NC7NC8NH8N260.0°60.0°
C6NC7NC8NH8N360.0°180.0°
C6NC5NC4NH5N1120.7°119.9°
C6NC5NC4NH5N2120.7°120.0°
C6NC5NC4NC3N175.2°180.0°
C6NC5NC4NH4N165.1°60.0°
C6NC5NC4NH4N255.4°60.0°
C6NC5NH5N1H5N2117.7°120.1°
C5NC6NH6N1H6N2118.9°120.0°
C5NC6NC7NH7N159.5°60.0°
C5NC6NC7NH7N259.4°60.0°
O2C2C1C3121.8°119.9°
O2C2C1H2119.6°120.2°
O2C2C1O159.8°57.5°
O2C2C1O5179.6°177.5°
O2C2C3H2121.7°120.2°
O2C2C3O359.8°63.2°
O2C2C3C4179.6°176.8°
O2C2C1H160.9°62.5°
O2C2C3H360.5°57.0°
C5NC4NC3NC2N142.1°179.9°
C5NC4NC3NH4N1119.8°120.0°
C5NC4NC3NH4N2119.8°120.0°
C5NC4NC3NH3N120.8°60.0°
C5NC4NC3NH3N296.6°60.0°
C5NC4NH4N1H4N2120.8°120.0°
C4NC5NH5N1H5N2117.7°120.0°
C4NC5NC6NH6N161.7°60.0°
C4NC5NC6NH6N257.6°60.0°
C3NC2NC1NH2N1119.3°120.1°
C3NC2NC1NH2N2119.2°119.9°
C2NC3NC4NH3N1121.3°120.1°
C2NC3NC4NH3N2121.3°119.9°
C3NC2NC1NO6'110.2°180.0°
C3NC2NC1NO1N77.7°0.1°
C3NC2NH2N1H2N2122.2°120.0°
C2NC3NH3N1H3N2115.8°120.0°
C2NC3NC4NH4N122.4°59.9°
C2NC3NC4NH4N298.1°60.0°
C1NC2NC3NC4N153.5°180.0°
C2NC1NO6'O1N172.3°179.9°
C2NC1NO6'C6'173.5°180.0°
C1NC2NH2N1H2N2122.2°119.9°
C1NC2NC3NH3N185.2°59.9°
C1NC2NC3NH3N232.2°60.1°
O2'C2'O1C145.7°66.0°
O2'C2'O1C3'112.1°118.0°
C2'O2'C5'C6'162.8°158.6°
C2'O2'C5'C4'28.3°40.1°
O2'C2'C3'O3'146.6°116.6°
O2'C2'C3'C4'28.1°2.1°
O2'C2'C1'H1'1177.0°173.2°
O2'C2'C1'H1'263.5°66.7°
O2'C2'C3'H3'88.7°120.9°
C2'O2'C5'H5'82.2°78.5°
C5'O2'C2'O1112.3°146.0°
C5'O2'C2'C3'0.2°26.6°
O2'C5'C6'O6'48.6°70.9°
O2'C5'C6'C4'128.3°114.0°
O2'C5'C6'H5'115.4°123.1°
O2'C5'C4'H5'111.0°118.7°
O2'C5'C4'C3'45.0°37.1°
O2'C5'C4'O4'159.2°155.3°
O2'C5'C4'H4'73.2°81.2°
O2'C5'C6'H6'173.3°169.0°
O2'C5'C6'H6'2170.5°49.1°
C4NC3NC2NH2N187.3°59.9°
C4NC3NC2NH2N234.2°60.1°
C4NC3NH3N1H3N2115.8°120.0°
C3NC4NH4N1H4N2120.7°120.0°
C3NC4NC5NH5N154.4°60.0°
C3NC4NC5NH5N264.1°60.0°
C2C1O1O5118.4°119.9°
C2C1O1H1119.8°120.0°
C2C1O5H1118.9°120.0°
C2C1O1C2'148.7°168.9°
C1C2C3H2118.5°119.9°
C2C1O5C559.2°61.2°
C1C2C3O3179.6°176.9°
C1C2C3C459.7°56.9°
C1C2C3H359.3°62.9°
C1C2O2HO2180.0°60.0°
O1C1O5H1122.1°120.1°
C1O1C2'C3'157.8°176.1°
O1C1C2C362.0°62.4°
O1C1O5C559.8°58.8°
O1C1C2H2179.4°177.7°
O5C1O1C2'92.9°71.1°
O5C1C2C357.8°57.6°
C1O5C5C459.0°61.2°
C1O5C5C6179.3°178.8°
O5C1C2H260.8°62.3°
C1O5C5H559.3°58.8°
O1C2'C3'O3'29.6°3.0°
O1C2'C3'C4'88.8°121.6°
C2'O1C1H128.8°48.9°
O1C2'C1'H1'159.7°52.1°
O1C2'C1'H1'259.8°172.2°
O1C2'C3'H3'154.4°119.6°
C2'C3'C4'C5'43.0°20.9°
C2'C3'O3'C4'113.4°114.8°
C2'C3'O3'H3'123.5°122.6°
C2'C3'C4'H3'116.1°118.8°
C2'C3'C4'O4'158.0°139.1°
C3'C2'C1'H1'158.0°68.8°
C3'C2'C1'H1'2177.5°51.3°
C2'C3'C4'H4'75.3°97.4°
C2'C3'O3'H6180.0°180.0°
C2C3O3C4119.5°119.6°
C2C3O3H3119.2°120.2°
C2C3C4H3118.7°119.9°
C2C3C4C559.8°56.9°
C2C3C4O4179.7°176.9°
C3C2C1H1177.3°177.6°
C2C3C4H459.5°63.0°
C3C2O2HO259.2°179.7°
C2C3O3HO3180.0°60.0°
C1NO6'C6'C5'157.2°180.0°
C1NO6'C6'H6'135.3°60.0°
C1NO6'C6'H6'280.9°60.0°
O6'C1NC2NH2N19.0°59.9°
O6'C1NC2NH2N2130.5°60.1°
C6'O6'C1NO1N1.2°0.1°
O6'C6'C5'H6'1121.9°120.0°
O6'C6'C5'H6'2121.9°120.0°
O6'C6'C5'C4'176.9°175.0°
O6'C6'C5'H5'66.7°52.1°
O6'C6'H6'1H6'2113.7°120.0°
O1NC1NC2NH2N1163.1°120.0°
O1NC1NC2NH2N241.6°120.0°
O5C5C4C358.2°57.6°
O5C5C6O640.7°65.1°
O5C5C4C6120.8°120.0°
O5C5C4H5118.8°120.0°
O5C5C6H5120.1°120.0°
O5C5C4O4178.6°177.5°
C5O5C1H1178.1°178.8°
O5C5C4H461.5°62.3°
O5C5C6H61160.9°174.9°
O5C5C6H6279.5°54.9°
C6'C5'C4'H5'116.4°122.8°
C6'C5'C4'C3'177.6°155.5°
C6'C5'C4'O4'68.2°86.3°
C6'C5'C4'H4'59.4°37.3°
C5'C6'H6'1H6'2113.7°120.0°
C5'C4'C3'O3'163.1°139.6°
C5'C4'C3'O4'115.1°118.2°
C5'C4'C3'H4'118.2°118.3°
C5'C4'O4'H4'127.0°123.7°
C5'C4'C3'H3'73.2°97.9°
C4'C5'C6'H6'155.0°55.0°
C4'C5'C6'H6'261.2°65.0°
C5'C4'O4'H7180.0°67.3°
O3'C3'C4'H3'123.8°122.5°
O3'C3'C4'O4'81.9°102.2°
O3'C3'C4'H4'44.8°21.3°
C3'C4'O4'H4'126.1°123.6°
C3'C4'C5'H5'66.0°81.6°
C4'C3'O3'H666.6°65.2°
C3'C4'O4'H773.1°180.0°
O3C3C4H3121.9°120.2°
O3C3C4C5179.1°176.8°
O3C3C4O460.3°63.2°
O3C3C2H261.9°57.0°
O3C3C4H459.8°56.9°
C3C4C5O4120.4°120.0°
C3C4C5H4119.6°119.9°
C3C4C5C6179.0°177.6°
C3C4O4H4119.7°120.1°
C4C3C2H258.8°63.0°
C3C4C5H560.6°62.4°
C4C3O3HO360.4°179.6°
C3C4O4HO4180.0°60.0°
O4'C4'C3'H3'41.9°20.3°
O4'C4'C5'H5'48.2°36.6°
O6C6C5C479.2°175.0°
O6C6C5H61120.2°120.0°
O6C6C5H62120.2°120.0°
O6C6C5H5160.8°55.0°
O6C6H61H62119.5°120.0°
C4C5C6H5120.0°120.0°
C5C4O4H4119.1°120.1°
C5C4C3H359.0°63.0°
C4C5C6H6141.0°55.0°
C4C5C6H62160.6°65.0°
C5C4O4HO458.8°179.7°
C6C5C4O460.6°62.5°
C6C5C4H459.3°57.7°
C5C6H61H62119.5°120.0°
C5C6O6HO6180.0°180.0°
O4C4C3H361.6°57.0°
O4C4C5H559.8°57.5°
H1C1C2H258.7°57.7°
H2C2C3H3177.8°177.2°
H2C2O2HO261.5°60.1°
H3C3C4H4178.3°177.1°
H3C3O3HO360.8°60.2°
H4C4C5H5179.7°177.7°
H4C4O4HO460.3°60.2°
H5C5C6H6179.0°65.1°
H5C5C6H6240.6°174.9°
H61C6O6HO659.8°60.0°
H62C6O6HO659.8°60.1°
H1'1C1'O1'H1'59.7°60.0°
H1'2C1'O1'H1'59.8°60.0°
H3'C3'C4'H4'168.6°143.9°
H3'C3'O3'H656.5°57.5°
H4'C4'C5'H5'175.8°160.1°
H4'C4'O4'H753.0°56.3°
H5'C5'C6'H6'1171.3°67.9°
H5'C5'C6'H6'255.1°172.2°
H2N1C2NC3NH3N134.1°180.0°
H2N1C2NC3NH3N2151.4°60.0°
H2N2C2NC3NH3N1155.6°60.0°
H2N2C2NC3NH3N287.0°180.0°
H3N1C3NC4NH4N198.9°180.0°
H3N1C3NC4NH4N2140.6°60.0°
H3N2C3NC4NH4N1143.7°60.0°
H3N2C3NC4NH4N223.2°180.0°
H4N1C4NC5NH5N1174.2°179.9°
H4N1C4NC5NH5N255.6°60.0°
H4N2C4NC5NH5N165.3°60.0°
H4N2C4NC5NH5N2176.1°180.0°
H5N1C5NC6NH6N1177.6°180.0°
H5N1C5NC6NH6N263.2°60.0°
H5N2C5NC6NH6N159.0°60.0°
H5N2C5NC6NH6N2178.3°180.0°
H6N1C6NC7NH7N1179.9°180.0°
H6N1C6NC7NH7N261.0°60.0°
H6N2C6NC7NH7N160.8°60.0°
H6N2C6NC7NH7N2179.7°180.0°
H7N1C7NC8NH8N159.4°180.0°
H7N1C7NC8NH8N260.6°60.0°
H7N1C7NC8NH8N3179.4°60.0°
H7N2C7NC8NH8N159.5°60.0°
H7N2C7NC8NH8N2179.5°180.0°
H7N2C7NC8NH8N360.5°60.0°
H8N1C8NH8N2H8N3120.0°120.0°

219869

PDB entries from 2024-05-15

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