PRD_900034

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	S4'	sing	1.81Å	1.76Å
C1	C2	sing	1.53Å	1.53Å
C1	O5	sing	1.43Å	1.45Å
C2	O2	sing	1.43Å	1.40Å
C2	C3	sing	1.53Å	1.55Å
C3	O3	sing	1.43Å	1.43Å
C3	C4	sing	1.53Å	1.53Å
C4	O4	sing	1.43Å	1.45Å
C4	C5	sing	1.53Å	1.58Å
C5	O5	sing	1.43Å	1.41Å
C5	C6	sing	1.53Å	1.54Å
C6	O6	sing	1.43Å	1.42Å
C1'	O5'	sing	1.43Å	1.41Å
C1'	O1'	sing	1.43Å	1.41Å
C1'	C2'	sing	1.53Å	1.52Å
C2'	C3'	sing	1.53Å	1.51Å
C2'	O2'	sing	1.43Å	1.44Å
C3'	C4'	sing	1.53Å	1.53Å
C3'	O3'	sing	1.43Å	1.46Å
C4'	C5'	sing	1.53Å	1.56Å
C4'	S4'	sing	1.81Å	1.79Å
C5'	O5'	sing	1.43Å	1.47Å
C5'	C6'	sing	1.53Å	1.56Å
C6'	O6'	sing	1.43Å	1.39Å
C1	H1	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
C3	H3	sing	1.09Å	1.10Å
C4	H4	sing	1.09Å	1.10Å
C5	H5	sing	1.09Å	1.10Å
C6	H61	sing	1.09Å	1.10Å
C6	H62	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å
O4	HO4	sing	0.97Å	0.95Å
O6	HO6	sing	0.97Å	0.95Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	H2'	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C5'	H5'	sing	1.09Å	1.10Å
C6'	H6'2	sing	1.09Å	1.10Å
C6'	H6'1	sing	1.09Å	1.10Å
O1'	HO1'	sing	0.97Å	0.95Å
O2'	HO2'	sing	0.97Å	0.95Å
O3'	HO3'	sing	0.97Å	0.95Å
O6'	HO6'	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
S4'	C1	C2	108.6°	109.5°
S4'	C1	O5	111.0°	109.5°
C1	S4'	C4'	98.9°	103.0°
S4'	C1	H1	106.5°	109.5°
C2	C1	O5	111.1°	109.4°
C1	C2	O2	109.3°	109.5°
C1	C2	C3	113.0°	109.2°
C2	C1	H1	109.1°	109.5°
C1	C2	H2	109.4°	109.6°
C1	O5	C5	106.8°	114.1°
O5	C1	H1	110.3°	109.4°
O2	C2	C3	104.7°	109.5°
O2	C2	H2	111.2°	109.5°
C2	O2	HO2	109.5°	114.0°
C2	C3	O3	111.4°	109.5°
C2	C3	C4	103.9°	109.0°
C3	C2	H2	109.2°	109.6°
C2	C3	H3	105.5°	109.5°
O3	C3	C4	122.5°	109.6°
O3	C3	H3	106.7°	109.6°
C3	O3	HO3	109.5°	114.0°
C3	C4	O4	111.4°	109.5°
C3	C4	C5	110.5°	109.2°
C4	C3	H3	105.6°	109.6°
C3	C4	H4	106.0°	109.6°
O4	C4	C5	115.9°	109.5°
O4	C4	H4	107.0°	109.5°
C4	O4	HO4	109.5°	114.0°
C4	C5	O5	115.0°	109.4°
C4	C5	C6	109.2°	109.5°
C5	C4	H4	105.5°	109.6°
C4	C5	H5	107.7°	109.5°
O5	C5	C6	106.4°	109.5°
O5	C5	H5	110.0°	109.4°
C5	C6	O6	112.0°	109.5°
C6	C5	H5	108.3°	109.5°
C5	C6	H61	108.8°	109.4°
C5	C6	H62	108.8°	109.4°
O6	C6	H61	108.8°	109.5°
O6	C6	H62	108.8°	109.5°
C6	O6	HO6	109.5°	113.9°
O5'	C1'	O1'	108.1°	109.5°
O5'	C1'	C2'	107.6°	109.5°
C1'	O5'	C5'	106.6°	114.1°
O5'	C1'	H1'	111.2°	109.5°
O1'	C1'	C2'	109.0°	109.5°
O1'	C1'	H1'	111.2°	109.5°
C1'	O1'	HO1'	109.5°	114.0°
C1'	C2'	C3'	111.2°	109.2°
C1'	C2'	O2'	111.1°	109.6°
C2'	C1'	H1'	109.6°	109.4°
C1'	C2'	H2'	108.5°	109.5°
C3'	C2'	O2'	107.8°	109.5°
C2'	C3'	C4'	111.0°	109.0°
C2'	C3'	O3'	115.2°	109.6°
C3'	C2'	H2'	108.6°	109.5°
C2'	C3'	H3'	106.6°	109.6°
O2'	C2'	H2'	109.6°	109.6°
C2'	O2'	HO2'	109.5°	114.0°
C4'	C3'	O3'	109.8°	109.5°
C3'	C4'	C5'	119.2°	109.1°
C3'	C4'	S4'	107.2°	109.5°
C4'	C3'	H3'	106.4°	109.5°
C3'	C4'	H4'	107.0°	109.5°
O3'	C3'	H3'	107.2°	109.6°
C3'	O3'	HO3'	109.5°	113.9°
C5'	C4'	S4'	111.2°	109.5°
C4'	C5'	O5'	116.9°	109.4°
C4'	C5'	C6'	105.3°	109.4°
C5'	C4'	H4'	106.7°	109.5°
C4'	C5'	H5'	106.5°	109.5°
S4'	C4'	H4'	104.5°	109.6°
O5'	C5'	C6'	113.4°	109.5°
O5'	C5'	H5'	107.6°	109.5°
C5'	C6'	O6'	109.6°	109.4°
C6'	C5'	H5'	106.5°	109.5°
C5'	C6'	H6'2	109.4°	109.5°
C5'	C6'	H6'1	109.5°	109.5°
O6'	C6'	H6'2	109.5°	109.5°
O6'	C6'	H6'1	109.5°	109.4°
C6'	O6'	HO6'	109.5°	114.0°
H61	C6	H62	109.5°	109.4°
H6'2	C6'	H6'1	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
S4'	C1	C2	O5	122.4°	120.0°
S4'	C1	C2	H1	115.8°	120.1°
S4'	C1	O5	H1	117.9°	120.0°
S4'	C1	C2	O2	58.2°	62.5°
S4'	C1	C2	C3	174.3°	177.6°
S4'	C1	O5	C5	178.5°	178.8°
C1	S4'	C4'	C3'	118.0°	74.0°
C1	S4'	C4'	C5'	110.1°	166.4°
S4'	C1	C2	H2	63.8°	57.6°
C1	S4'	C4'	H4'	4.6°	46.2°
C2	C1	O5	H1	121.2°	120.0°
C1	C2	O2	C3	121.3°	119.7°
C1	C2	O2	H2	120.9°	120.2°
C1	C2	C3	H2	122.0°	120.0°
C1	C2	C3	O3	169.7°	176.9°
C1	C2	C3	C4	56.6°	57.0°
C2	C1	O5	C5	60.6°	61.1°
C2	C1	S4'	C4'	146.8°	105.9°
C1	C2	C3	H3	54.3°	62.9°
C1	C2	O2	HO2	180.0°	60.0°
O5	C1	C2	O2	179.4°	177.5°
O5	C1	C2	C3	63.3°	57.6°
C1	O5	C5	C4	60.0°	61.1°
C1	O5	C5	C6	179.0°	178.8°
O5	C1	S4'	C4'	90.8°	134.2°
O5	C1	C2	H2	58.6°	62.4°
C1	O5	C5	H5	61.9°	58.8°
O2	C2	C3	H2	119.2°	120.1°
O2	C2	C3	O3	50.9°	63.3°
O2	C2	C3	C4	175.4°	176.9°
O2	C2	C1	H1	57.5°	57.6°
O2	C2	C3	H3	64.5°	57.0°
C2	C3	O3	C4	123.7°	119.5°
C2	C3	O3	H3	114.7°	120.2°
C2	C3	C4	H3	110.8°	119.9°
C2	C3	C4	O4	177.8°	176.9°
C2	C3	C4	C5	52.0°	57.0°
C3	C2	C1	H1	58.6°	62.3°
C2	C3	C4	H4	61.8°	63.0°
C3	C2	O2	HO2	58.7°	179.7°
C2	C3	O3	HO3	180.0°	60.0°
O3	C3	C4	H3	122.2°	120.3°
O3	C3	C4	O4	50.8°	63.3°
O3	C3	C4	C5	179.0°	176.8°
O3	C3	C2	H2	68.3°	56.8°
O3	C3	C4	H4	65.2°	56.8°
C3	C4	O4	C5	127.3°	119.7°
C3	C4	O4	H4	115.4°	120.2°
C3	C4	C5	H4	114.1°	120.0°
C3	C4	C5	O5	59.3°	57.6°
C3	C4	C5	C6	178.9°	177.6°
C4	C3	C2	H2	65.4°	63.0°
C3	C4	C5	H5	63.8°	62.3°
C4	C3	O3	HO3	56.3°	179.5°
C3	C4	O4	HO4	180.0°	60.0°
O4	C4	C5	H4	118.1°	120.1°
O4	C4	C5	O5	172.9°	177.5°
O4	C4	C5	C6	53.4°	62.5°
O4	C4	C3	H3	71.4°	57.0°
O4	C4	C5	H5	64.0°	57.6°
C4	C5	O5	C6	121.0°	120.0°
C4	C5	O5	H5	121.9°	120.0°
C4	C5	C6	H5	117.0°	120.1°
C4	C5	C6	O6	175.0°	174.7°
C5	C4	C3	H3	58.8°	62.9°
C4	C5	C6	H61	64.7°	54.7°
C4	C5	C6	H62	54.6°	65.2°
C5	C4	O4	HO4	52.6°	179.7°
O5	C5	C6	H5	118.3°	120.0°
O5	C5	C6	O6	50.2°	65.3°
C5	O5	C1	H1	60.6°	58.8°
O5	C5	C4	H4	54.8°	62.4°
O5	C5	C6	H61	170.6°	174.6°
O5	C5	C6	H62	70.1°	54.7°
C5	C6	O6	H61	120.4°	120.0°
C5	C6	O6	H62	120.4°	120.0°
C6	C5	C4	H4	64.7°	57.6°
C5	C6	H61	H62	118.8°	119.9°
C5	C6	O6	HO6	180.0°	180.0°
O6	C6	C5	H5	68.0°	54.6°
O6	C6	H61	H62	118.8°	120.1°
O5'	C1'	O1'	C2'	116.7°	120.0°
O5'	C1'	O1'	H1'	122.4°	120.0°
O5'	C1'	C2'	H1'	121.1°	120.0°
O5'	C1'	C2'	C3'	73.5°	57.6°
O5'	C1'	C2'	O2'	166.5°	177.5°
C1'	O5'	C5'	C4'	44.1°	61.2°
C1'	O5'	C5'	C6'	166.9°	178.9°
O5'	C1'	C2'	H2'	45.9°	62.3°
C1'	O5'	C5'	H5'	75.6°	58.9°
O5'	C1'	O1'	HO1'	180.0°	60.0°
O1'	C1'	C2'	H1'	121.9°	120.0°
O1'	C1'	C2'	C3'	169.5°	177.6°
O1'	C1'	C2'	O2'	49.5°	62.5°
O1'	C1'	O5'	C5'	169.5°	178.9°
O1'	C1'	C2'	H2'	71.1°	57.7°
C1'	C2'	C3'	O2'	121.9°	120.0°
C1'	C2'	C3'	H2'	119.4°	119.9°
C1'	C2'	O2'	H2'	119.9°	120.2°
C1'	C2'	C3'	C4'	38.3°	57.0°
C1'	C2'	C3'	O3'	164.0°	176.8°
C2'	C1'	O5'	C5'	72.9°	61.1°
C1'	C2'	C3'	H3'	77.2°	62.9°
C2'	C1'	O1'	HO1'	63.3°	180.0°
C1'	C2'	O2'	HO2'	180.0°	60.0°
C3'	C2'	O2'	H2'	118.1°	120.1°
C2'	C3'	C4'	O3'	128.6°	119.9°
C2'	C3'	C4'	H3'	115.7°	119.9°
C2'	C3'	O3'	H3'	118.5°	120.3°
C2'	C3'	C4'	C5'	11.7°	57.0°
C2'	C3'	C4'	S4'	139.1°	176.9°
C3'	C2'	C1'	H1'	47.6°	62.4°
C2'	C3'	C4'	H4'	109.3°	62.9°
C3'	C2'	O2'	HO2'	58.0°	179.7°
C2'	C3'	O3'	HO3'	180.0°	55.2°
O2'	C2'	C3'	C4'	160.3°	176.9°
O2'	C2'	C3'	O3'	74.1°	63.2°
O2'	C2'	C1'	H1'	72.4°	57.5°
O2'	C2'	C3'	H3'	44.8°	57.1°
C4'	C3'	O3'	H3'	115.2°	120.1°
C3'	C4'	C5'	S4'	125.5°	119.9°
C3'	C4'	C5'	H4'	121.2°	119.8°
C3'	C4'	S4'	H4'	113.4°	120.2°
C3'	C4'	C5'	O5'	14.3°	57.6°
C3'	C4'	C5'	C6'	141.1°	177.6°
C4'	C3'	C2'	H2'	81.0°	62.9°
C3'	C4'	C5'	H5'	106.0°	62.4°
C4'	C3'	O3'	HO3'	53.7°	174.8°
O3'	C3'	C4'	C5'	140.4°	176.9°
O3'	C3'	C4'	S4'	92.3°	63.2°
O3'	C3'	C2'	H2'	44.6°	56.9°
O3'	C3'	C4'	H4'	19.4°	57.0°
C5'	C4'	S4'	H4'	114.7°	120.2°
C4'	C5'	O5'	C6'	122.8°	120.0°
C4'	C5'	O5'	H5'	119.7°	120.0°
C4'	C5'	C6'	H5'	112.8°	120.0°
C4'	C5'	C6'	O6'	127.6°	175.0°
C5'	C4'	C3'	H3'	103.9°	62.9°
C4'	C5'	C6'	H6'2	7.5°	55.0°
C4'	C5'	C6'	H6'1	112.4°	65.1°
S4'	C4'	C5'	O5'	139.8°	177.5°
S4'	C4'	C5'	C6'	93.4°	62.5°
C4'	S4'	C1	H1	29.3°	14.2°
S4'	C4'	C3'	H3'	23.4°	57.0°
S4'	C4'	C5'	H5'	19.5°	57.5°
O5'	C5'	C6'	H5'	118.2°	120.0°
O5'	C5'	C6'	O6'	103.5°	65.0°
C5'	O5'	C1'	H1'	47.1°	58.8°
O5'	C5'	C4'	H4'	106.9°	62.2°
O5'	C5'	C6'	H6'2	136.5°	174.9°
O5'	C5'	C6'	H6'1	16.5°	54.9°
C5'	C6'	O6'	H6'2	120.0°	120.0°
C5'	C6'	O6'	H6'1	120.0°	120.0°
C6'	C5'	C4'	H4'	19.9°	57.8°
C5'	C6'	H6'2	H6'1	120.0°	120.0°
C5'	C6'	O6'	HO6'	180.0°	180.0°
O6'	C6'	C5'	H5'	14.7°	55.0°
O6'	C6'	H6'2	H6'1	120.0°	120.0°
H1	C1	C2	H2	179.5°	177.7°
H2	C2	C3	H3	176.3°	177.1°
H2	C2	O2	HO2	59.1°	60.2°
H3	C3	C4	H4	172.6°	177.1°
H3	C3	O3	HO3	65.4°	60.2°
H4	C4	C5	H5	177.9°	177.7°
H4	C4	O4	HO4	64.6°	60.1°
H5	C5	C6	H61	52.4°	65.4°
H5	C5	C6	H62	171.6°	174.7°
H61	C6	O6	HO6	59.7°	60.0°
H62	C6	O6	HO6	59.6°	60.0°
H1'	C1'	C2'	H2'	167.0°	177.7°
H1'	C1'	O1'	HO1'	57.6°	60.0°
H2'	C2'	C3'	H3'	163.5°	177.2°
H2'	C2'	O2'	HO2'	60.1°	60.2°
H3'	C3'	C4'	H4'	135.1°	177.2°
H3'	C3'	O3'	HO3'	61.5°	65.1°
H4'	C4'	C5'	H5'	132.8°	177.7°
H5'	C5'	C6'	H6'2	105.3°	65.0°
H5'	C5'	C6'	H6'1	134.7°	174.9°
H6'2	C6'	O6'	HO6'	60.0°	60.0°
H6'1	C6'	O6'	HO6'	60.0°	60.1°

Release date:	2020-07-29
Last modified:	2020-07-29
Processing site:	RCSB