PRD_900032

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O1	sing	1.43Å	1.41Å
C1	C2	sing	1.53Å	1.51Å
C1	O5	sing	1.43Å	1.42Å
O1	C2'	sing	1.43Å	1.41Å
C2	C3	sing	1.53Å	1.52Å
C2	O2	sing	1.43Å	1.40Å
C3	C4	sing	1.53Å	1.52Å
C3	O3	sing	1.43Å	1.41Å
C4	O4	sing	1.43Å	1.41Å
C4	C5	sing	1.53Å	1.53Å
C5	C6	sing	1.53Å	1.52Å
C5	O5	sing	1.43Å	1.41Å
C6	O6	sing	1.43Å	1.41Å
C1'	C2'	sing	1.53Å	1.51Å
C1'	O1'	sing	1.43Å	1.41Å
C2'	O2'	sing	1.44Å	1.41Å
C2'	C3'	sing	1.55Å	1.52Å
O2'	C5'	sing	1.44Å	1.43Å
C3'	C4'	sing	1.55Å	1.51Å
C3'	O3'	sing	1.43Å	1.42Å
C4'	C5'	sing	1.55Å	1.53Å
C4'	O4'	sing	1.43Å	1.42Å
C5'	C6'	sing	1.53Å	1.52Å
C6'	O6'	sing	1.43Å	1.40Å
C1	H1	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C3	H3	sing	1.09Å	1.10Å
O3	HO3	sing	0.97Å	0.95Å
C4	H4	sing	1.09Å	1.10Å
O4	HO4	sing	0.97Å	0.95Å
C5	H5	sing	1.09Å	1.10Å
C6	H6A	sing	1.09Å	1.10Å
C6	H6	sing	1.09Å	1.10Å
O6	HO6	sing	0.97Å	0.95Å
C1'	H1'	sing	1.09Å	1.10Å
C1'	H1'A	sing	1.09Å	1.10Å
O1'	HO1'	sing	0.97Å	0.95Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	HO4'	sing	0.97Å	0.95Å
C5'	H5'	sing	1.09Å	1.10Å
C6'	H6'	sing	1.09Å	1.10Å
C6'	H6'A	sing	1.09Å	1.10Å
O6'	HO6'	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C2	106.1°	109.5°
O1	C1	O5	110.2°	109.5°
C1	O1	C2'	118.0°	114.0°
O1	C1	H1	109.9°	109.5°
C2	C1	O5	112.5°	109.4°
C1	C2	C3	109.2°	109.2°
C1	C2	O2	108.0°	109.5°
C2	C1	H1	108.4°	109.5°
C1	C2	H2	109.3°	109.5°
C1	O5	C5	116.4°	114.1°
O5	C1	H1	109.7°	109.5°
O1	C2'	C1'	109.7°	110.4°
O1	C2'	O2'	106.2°	110.4°
O1	C2'	C3'	116.5°	110.3°
C3	C2	O2	110.3°	109.5°
C2	C3	C4	106.3°	109.0°
C2	C3	O3	109.4°	109.5°
C3	C2	H2	109.2°	109.5°
C2	C3	H3	109.2°	109.5°
O2	C2	H2	110.8°	109.6°
C2	O2	HO2	109.5°	114.0°
C4	C3	O3	111.9°	109.6°
C3	C4	O4	109.1°	109.5°
C3	C4	C5	110.3°	109.2°
C4	C3	H3	109.1°	109.6°
C3	C4	H4	108.5°	109.5°
O3	C3	H3	110.8°	109.7°
C3	O3	HO3	109.5°	114.0°
O4	C4	C5	110.3°	109.5°
O4	C4	H4	110.1°	109.5°
C4	O4	HO4	109.5°	114.0°
C4	C5	C6	111.4°	109.5°
C4	C5	O5	110.8°	109.4°
C5	C4	H4	108.4°	109.6°
C4	C5	H5	108.4°	109.5°
C6	C5	O5	107.5°	109.5°
C5	C6	O6	110.4°	109.5°
C6	C5	H5	108.6°	109.5°
C5	C6	H6A	109.2°	109.4°
C5	C6	H6	109.2°	109.5°
O5	C5	H5	110.1°	109.5°
O6	C6	H6A	109.3°	109.5°
O6	C6	H6	109.2°	109.5°
C6	O6	HO6	109.5°	114.0°
C2'	C1'	O1'	106.4°	109.5°
C1'	C2'	O2'	109.3°	110.3°
C1'	C2'	C3'	107.7°	110.4°
C2'	C1'	H1'	110.2°	109.4°
C2'	C1'	H1'A	110.2°	109.5°
O1'	C1'	H1'	110.3°	109.5°
O1'	C1'	H1'A	110.2°	109.5°
C1'	O1'	HO1'	109.5°	114.0°
O2'	C2'	C3'	107.2°	104.9°
C2'	O2'	C5'	108.4°	105.3°
C2'	C3'	C4'	105.5°	104.1°
C2'	C3'	O3'	110.5°	110.5°
C2'	C3'	H3'	109.5°	110.5°
O2'	C5'	C4'	105.5°	104.7°
O2'	C5'	C6'	112.0°	110.4°
O2'	C5'	H5'	110.3°	110.3°
C4'	C3'	O3'	110.5°	110.5°
C3'	C4'	C5'	103.8°	104.0°
C3'	C4'	O4'	111.2°	110.5°
C4'	C3'	H3'	109.6°	110.5°
C3'	C4'	H4'	108.1°	110.5°
O3'	C3'	H3'	111.0°	110.6°
C3'	O3'	HO3'	109.5°	114.0°
C5'	C4'	O4'	116.0°	110.6°
C4'	C5'	C6'	111.0°	110.5°
C5'	C4'	H4'	107.9°	110.5°
C4'	C5'	H5'	109.0°	110.3°
O4'	C4'	H4'	109.3°	110.6°
C4'	O4'	HO4'	109.5°	114.0°
C5'	C6'	O6'	113.9°	109.5°
C6'	C5'	H5'	109.0°	110.5°
C5'	C6'	H6'	108.3°	109.5°
C5'	C6'	H6'A	108.4°	109.5°
O6'	C6'	H6'	108.4°	109.5°
O6'	C6'	H6'A	108.4°	109.4°
C6'	O6'	HO6'	109.5°	114.0°
H6A	C6	H6	109.5°	109.5°
H1'	C1'	H1'A	109.5°	109.4°
H6'	C6'	H6'A	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C2	O5	120.6°	120.0°
O1	C1	C2	H1	118.0°	120.1°
O1	C1	O5	H1	121.1°	120.0°
O1	C1	C2	C3	64.5°	62.3°
O1	C1	C2	O2	55.5°	57.5°
O1	C1	O5	C5	66.1°	58.8°
C1	O1	C2'	C1'	109.7°	53.5°
C1	O1	C2'	O2'	132.3°	175.8°
C1	O1	C2'	C3'	13.0°	68.8°
O1	C1	C2	H2	176.1°	177.7°
C2	C1	O5	H1	120.7°	120.0°
C2	C1	O1	C2'	162.6°	163.0°
C1	C2	C3	O2	118.5°	119.9°
C1	C2	C3	H2	119.4°	119.9°
C1	C2	O2	H2	119.7°	120.1°
C1	C2	C3	C4	60.2°	57.0°
C1	C2	C3	O3	178.8°	176.9°
C2	C1	O5	C5	52.1°	61.2°
C1	C2	O2	HO2	180.0°	60.1°
C1	C2	C3	H3	57.4°	62.8°
O5	C1	O1	C2'	75.4°	77.1°
O5	C1	C2	C3	56.1°	57.6°
O5	C1	C2	O2	176.1°	177.5°
C1	O5	C5	C4	50.9°	61.2°
C1	O5	C5	C6	172.8°	178.9°
O5	C1	C2	H2	63.3°	62.3°
C1	O5	C5	H5	69.1°	58.8°
O1	C2'	C1'	O2'	116.1°	122.3°
O1	C2'	C1'	C3'	127.7°	122.3°
O1	C2'	C1'	O1'	158.4°	54.2°
O1	C2'	O2'	C3'	125.2°	118.8°
O1	C2'	O2'	C5'	101.1°	78.3°
O1	C2'	C3'	C4'	112.5°	94.8°
O1	C2'	C3'	O3'	128.0°	146.5°
C2'	O1	C1	H1	45.6°	42.9°
O1	C2'	C1'	H1'	82.0°	65.8°
O1	C2'	C1'	H1'A	38.9°	174.3°
O1	C2'	C3'	H3'	5.4°	23.8°
C3	C2	O2	H2	121.1°	120.2°
C2	C3	C4	O3	119.4°	119.8°
C2	C3	C4	H3	117.7°	119.8°
C2	C3	O3	H3	120.4°	120.2°
C2	C3	C4	O4	178.1°	176.9°
C2	C3	C4	C5	60.5°	57.0°
C3	C2	C1	H1	177.6°	177.6°
C3	C2	O2	HO2	60.7°	179.7°
C2	C3	O3	HO3	180.0°	60.0°
C2	C3	C4	H4	58.1°	63.0°
O2	C2	C3	C4	178.7°	176.9°
O2	C2	C3	O3	60.2°	63.3°
O2	C2	C1	H1	62.5°	62.5°
O2	C2	C3	H3	61.1°	57.0°
C4	C3	O3	H3	122.0°	120.3°
C3	C4	O4	C5	121.4°	119.7°
C3	C4	O4	H4	119.0°	120.1°
C3	C4	C5	H4	118.7°	119.9°
C3	C4	C5	C6	175.0°	177.6°
C3	C4	C5	O5	55.4°	57.7°
C4	C3	C2	H2	59.2°	62.9°
C4	C3	O3	HO3	62.4°	179.5°
C3	C4	O4	HO4	180.0°	60.0°
C3	C4	C5	H5	65.6°	62.4°
O3	C3	C4	O4	58.7°	63.3°
O3	C3	C4	C5	179.9°	176.8°
O3	C3	C2	H2	61.8°	56.9°
O3	C3	C4	H4	61.2°	56.8°
O4	C4	C5	H4	120.7°	120.2°
O4	C4	C5	C6	64.4°	62.5°
O4	C4	C5	O5	176.0°	177.5°
O4	C4	C3	H3	64.2°	57.1°
O4	C4	C5	H5	55.0°	57.5°
C4	C5	C6	O5	121.5°	119.9°
C4	C5	C6	H5	119.3°	120.0°
C4	C5	O5	H5	120.0°	120.0°
C4	C5	C6	O6	31.8°	175.0°
C5	C4	C3	H3	57.1°	62.8°
C5	C4	O4	HO4	58.6°	179.6°
C4	C5	C6	H6A	152.0°	55.0°
C4	C5	C6	H6	88.3°	65.0°
C6	C5	O5	H5	118.1°	120.0°
C5	C6	O6	H6A	120.2°	120.0°
C5	C6	O6	H6	120.1°	120.0°
C6	C5	C4	H4	56.2°	57.7°
C5	C6	H6A	H6	119.6°	120.0°
C5	C6	O6	HO6	180.0°	180.0°
O5	C5	C6	O6	89.7°	65.1°
C5	O5	C1	H1	172.8°	178.8°
O5	C5	C4	H4	63.4°	62.3°
O5	C5	C6	H6A	30.5°	174.9°
O5	C5	C6	H6	150.2°	54.9°
O6	C6	C5	H5	151.2°	55.0°
O6	C6	H6A	H6	119.6°	120.0°
C2'	C1'	O1'	H1'	119.5°	120.0°
C2'	C1'	O1'	H1'A	119.5°	120.1°
C1'	C2'	O2'	C3'	116.5°	118.9°
C1'	C2'	O2'	C5'	140.7°	159.4°
C1'	C2'	C3'	C4'	123.8°	142.9°
C1'	C2'	C3'	O3'	4.3°	24.2°
C2'	C1'	H1'	H1'A	121.4°	120.0°
C2'	C1'	O1'	HO1'	180.0°	179.9°
C1'	C2'	C3'	H3'	118.3°	98.5°
O1'	C1'	C2'	O2'	42.4°	68.1°
O1'	C1'	C2'	C3'	73.8°	176.5°
O1'	C1'	H1'	H1'A	121.4°	120.0°
O2'	C2'	C3'	C4'	6.3°	24.0°
O2'	C2'	C3'	O3'	113.2°	94.6°
C2'	O2'	C5'	C4'	32.1°	40.4°
C2'	O2'	C5'	C6'	153.0°	159.4°
O2'	C2'	C1'	H1'	161.9°	172.0°
O2'	C2'	C1'	H1'A	77.1°	52.0°
O2'	C2'	C3'	H3'	124.2°	142.6°
C2'	O2'	C5'	H5'	85.5°	78.3°
C3'	C2'	O2'	C5'	24.2°	40.5°
C2'	C3'	C4'	O3'	119.4°	118.7°
C2'	C3'	C4'	H3'	117.8°	118.6°
C2'	C3'	O3'	H3'	121.7°	122.7°
C2'	C3'	C4'	C5'	12.2°	0.1°
C2'	C3'	C4'	O4'	137.7°	118.7°
C3'	C2'	C1'	H1'	45.7°	56.5°
C3'	C2'	C1'	H1'A	166.7°	63.5°
C2'	C3'	O3'	HO3'	180.0°	180.0°
C2'	C3'	C4'	H4'	102.3°	118.6°
O2'	C5'	C4'	C3'	26.7°	23.9°
O2'	C5'	C4'	C6'	121.6°	118.9°
O2'	C5'	C4'	H5'	118.4°	118.7°
O2'	C5'	C4'	O4'	149.0°	142.5°
O2'	C5'	C6'	H5'	122.4°	122.3°
O2'	C5'	C6'	O6'	4.3°	66.4°
O2'	C5'	C4'	H4'	87.9°	94.7°
O2'	C5'	C6'	H6'	116.3°	173.6°
O2'	C5'	C6'	H6'A	125.0°	53.6°
C4'	C3'	O3'	H3'	121.9°	122.6°
C3'	C4'	C5'	O4'	122.4°	118.7°
C3'	C4'	C5'	H4'	114.6°	118.6°
C3'	C4'	O4'	H4'	119.3°	122.7°
C3'	C4'	C5'	C6'	148.2°	142.7°
C4'	C3'	O3'	HO3'	63.6°	65.4°
C3'	C4'	O4'	HO4'	180.0°	180.0°
C3'	C4'	C5'	H5'	91.8°	94.8°
O3'	C3'	C4'	C5'	131.7°	118.6°
O3'	C3'	C4'	O4'	102.9°	122.7°
O3'	C3'	C4'	H4'	17.2°	0.0°
C5'	C4'	O4'	H4'	122.3°	122.7°
C4'	C5'	C6'	H5'	120.0°	122.3°
C4'	C5'	C6'	O6'	113.3°	178.2°
C5'	C4'	C3'	H3'	105.6°	118.7°
C5'	C4'	O4'	HO4'	61.6°	65.3°
C4'	C5'	C6'	H6'	126.0°	58.2°
C4'	C5'	C6'	H6'A	7.3°	61.8°
O4'	C4'	C5'	C6'	89.4°	98.6°
O4'	C4'	C3'	H3'	19.8°	0.0°
O4'	C4'	C5'	H5'	30.6°	23.8°
C5'	C6'	O6'	H6'	120.6°	120.1°
C5'	C6'	O6'	H6'A	120.6°	120.0°
C6'	C5'	C4'	H4'	33.6°	24.2°
C5'	C6'	H6'	H6'A	118.0°	120.0°
C5'	C6'	O6'	HO6'	180.0°	179.9°
O6'	C6'	C5'	H5'	126.7°	55.9°
O6'	C6'	H6'	H6'A	118.0°	119.9°
H1	C1	C2	H2	58.1°	57.7°
H2	C2	O2	HO2	60.4°	60.1°
H2	C2	C3	H3	176.8°	177.2°
H3	C3	O3	HO3	59.6°	60.2°
H3	C3	C4	H4	175.8°	177.2°
H4	C4	O4	HO4	61.0°	60.1°
H4	C4	C5	H5	175.7°	177.7°
H5	C5	C6	H6A	88.7°	65.0°
H5	C5	C6	H6	31.0°	175.0°
H6A	C6	O6	HO6	59.9°	60.1°
H6	C6	O6	HO6	59.8°	60.0°
H1'	C1'	O1'	HO1'	60.5°	59.9°
H1'A	C1'	O1'	HO1'	60.5°	60.0°
H3'	C3'	O3'	HO3'	58.2°	57.3°
H3'	C3'	C4'	H4'	139.9°	122.7°
H4'	C4'	O4'	HO4'	60.7°	57.3°
H4'	C4'	C5'	H5'	153.6°	146.6°
H5'	C5'	C6'	H6'	6.0°	64.2°
H5'	C5'	C6'	H6'A	112.7°	175.9°
H6'	C6'	O6'	HO6'	59.4°	59.9°
H6'A	C6'	O6'	HO6'	59.4°	60.0°

Release date:	2020-07-29
Last modified:	2020-07-29
Processing site:	RCSB