PRD_900008

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3	C3	sing	1.43Å	1.46Å
C3	C4	sing	1.53Å	1.49Å
C3	C2	sing	1.53Å	1.49Å
C4	O4	sing	1.43Å	1.42Å
C4	C5	sing	1.53Å	1.51Å
C5	C6	sing	1.53Å	1.50Å
C5	O5	sing	1.43Å	1.41Å
O2	C2	sing	1.43Å	1.44Å
C6	O6	sing	1.43Å	1.41Å
C2	C1	sing	1.53Å	1.53Å
C1	O5	sing	1.43Å	1.45Å
C1	O1	sing	1.43Å	1.38Å
O6'	C6'	sing	1.43Å	1.40Å
C6'	C5'	sing	1.53Å	1.52Å
O1	C4'	sing	1.43Å	1.44Å
C4'	C5'	sing	1.53Å	1.51Å
C4'	C3'	sing	1.53Å	1.51Å
C5'	O5'	sing	1.43Å	1.44Å
O5'	C1'	sing	1.43Å	1.47Å
O3'	C3'	sing	1.43Å	1.46Å
C3'	C2'	sing	1.53Å	1.48Å
C2'	C1'	sing	1.53Å	1.51Å
C2'	O2'	sing	1.43Å	1.44Å
C1'	O1'	sing	1.43Å	1.38Å
C1	H1	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
C3	H3	sing	1.09Å	1.10Å
C4	H4	sing	1.09Å	1.10Å
C5	H5	sing	1.09Å	1.10Å
C6	H6C2	sing	1.09Å	1.10Å
C6	H6C1	sing	1.09Å	1.10Å
O2	HA	sing	0.97Å	0.95Å
O3	HB	sing	0.97Å	0.95Å
O4	HC	sing	0.97Å	0.95Å
O6	H6	sing	0.97Å	0.95Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	H2'	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C5'	H5'	sing	1.09Å	1.10Å
C6'	H6'2	sing	1.09Å	1.10Å
C6'	H6'1	sing	1.09Å	1.10Å
O1'	HD	sing	0.97Å	0.95Å
O2'	HE	sing	0.97Å	0.95Å
O3'	HF	sing	0.97Å	0.95Å
O6'	H6'	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O3	C3	C4	110.0°	109.6°
O3	C3	C2	108.3°	109.6°
O3	C3	H3	108.8°	109.6°
C3	O3	HB	109.5°	114.0°
C4	C3	C2	112.8°	109.0°
C3	C4	O4	109.4°	109.5°
C3	C4	C5	111.4°	109.2°
C4	C3	H3	108.5°	109.5°
C3	C4	H4	110.3°	109.5°
C3	C2	O2	111.3°	109.6°
C3	C2	C1	111.7°	109.2°
C3	C2	H2	108.4°	109.5°
C2	C3	H3	108.4°	109.5°
O4	C4	C5	104.4°	109.5°
O4	C4	H4	111.3°	109.5°
C4	O4	HC	109.5°	114.0°
C4	C5	C6	118.4°	109.5°
C4	C5	O5	114.6°	109.4°
C5	C4	H4	109.9°	109.6°
C4	C5	H5	101.2°	109.5°
C6	C5	O5	115.4°	109.5°
C5	C6	O6	112.5°	109.5°
C6	C5	H5	101.3°	109.5°
C5	C6	H6C2	108.7°	109.5°
C5	C6	H6C1	108.7°	109.5°
C5	O5	C1	115.2°	114.1°
O5	C5	H5	102.0°	109.5°
O2	C2	C1	108.4°	109.5°
O2	C2	H2	109.0°	109.5°
C2	O2	HA	109.5°	114.1°
O6	C6	H6C2	108.7°	109.5°
O6	C6	H6C1	108.7°	109.4°
C6	O6	H6	109.5°	114.0°
C2	C1	O5	110.8°	109.4°
C2	C1	O1	108.8°	109.5°
C2	C1	H1	109.0°	109.5°
C1	C2	H2	108.0°	109.5°
O5	C1	O1	107.0°	109.5°
O5	C1	H1	110.1°	109.5°
C1	O1	C4'	114.8°	114.0°
O1	C1	H1	111.1°	109.5°
O6'	C6'	C5'	109.5°	109.5°
O6'	C6'	H6'2	109.5°	109.5°
O6'	C6'	H6'1	109.5°	109.4°
C6'	O6'	H6'	109.5°	114.0°
C6'	C5'	C4'	113.5°	109.4°
C6'	C5'	O5'	107.3°	109.5°
C6'	C5'	H5'	108.3°	109.4°
C5'	C6'	H6'2	109.5°	109.5°
C5'	C6'	H6'1	109.5°	109.5°
O1	C4'	C5'	109.0°	109.6°
O1	C4'	C3'	109.1°	109.5°
O1	C4'	H4'	110.3°	109.5°
C5'	C4'	C3'	109.6°	109.1°
C4'	C5'	O5'	110.1°	109.5°
C5'	C4'	H4'	109.4°	109.5°
C4'	C5'	H5'	108.3°	109.4°
C4'	C3'	O3'	110.9°	109.6°
C4'	C3'	C2'	111.6°	109.0°
C4'	C3'	H3'	107.6°	109.5°
C3'	C4'	H4'	109.4°	109.6°
C5'	O5'	C1'	113.5°	114.1°
O5'	C5'	H5'	109.3°	109.5°
O5'	C1'	C2'	111.5°	109.4°
O5'	C1'	O1'	109.1°	109.5°
O5'	C1'	H1'	107.4°	109.5°
O3'	C3'	C2'	110.3°	109.5°
O3'	C3'	H3'	108.2°	109.6°
C3'	O3'	HF	109.5°	114.0°
C3'	C2'	C1'	112.3°	109.1°
C3'	C2'	O2'	110.2°	109.5°
C3'	C2'	H2'	108.4°	109.6°
C2'	C3'	H3'	108.0°	109.6°
C1'	C2'	O2'	108.8°	109.5°
C2'	C1'	O1'	113.3°	109.5°
C2'	C1'	H1'	106.9°	109.4°
C1'	C2'	H2'	108.1°	109.5°
O2'	C2'	H2'	109.0°	109.5°
C2'	O2'	HE	109.5°	114.0°
O1'	C1'	H1'	108.5°	109.5°
C1'	O1'	HD	109.5°	114.0°
H6C2	C6	H6C1	109.5°	109.4°
H6'2	C6'	H6'1	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3	C3	C4	C2	121.0°	119.9°
O3	C3	C4	H3	118.9°	120.3°
O3	C3	C2	H3	117.9°	120.3°
O3	C3	C4	O4	55.2°	56.9°
O3	C3	C4	C5	170.1°	176.8°
O3	C3	C2	O2	64.5°	63.2°
O3	C3	C2	C1	174.3°	176.9°
O3	C3	C2	H2	55.5°	57.0°
O3	C3	C4	H4	67.5°	63.2°
C4	C3	C2	H3	120.2°	119.8°
C3	C4	O4	C5	119.3°	119.7°
C3	C4	O4	H4	122.1°	120.1°
C3	C4	C5	H4	122.5°	119.9°
C3	C4	C5	C6	170.2°	177.6°
C3	C4	C5	O5	48.2°	57.6°
C4	C3	C2	O2	173.6°	176.9°
C4	C3	C2	C1	52.4°	56.9°
C4	C3	C2	H2	66.5°	63.0°
C3	C4	C5	H5	60.7°	62.4°
C4	C3	O3	HB	180.0°	180.0°
C3	C4	O4	HC	180.0°	60.0°
C2	C3	C4	O4	65.8°	63.0°
C2	C3	C4	C5	49.2°	56.9°
C3	C2	O2	C1	123.2°	119.8°
C3	C2	O2	H2	119.6°	120.1°
C3	C2	C1	H2	119.1°	119.9°
C3	C2	C1	O5	52.4°	57.6°
C3	C2	C1	O1	169.8°	177.6°
C3	C2	C1	H1	68.9°	62.4°
C2	C3	C4	H4	171.5°	176.9°
C3	C2	O2	HA	180.0°	179.8°
C2	C3	O3	HB	56.4°	60.4°
O4	C4	C5	H4	119.5°	120.2°
O4	C4	C5	C6	71.8°	57.7°
O4	C4	C5	O5	69.8°	62.3°
O4	C4	C3	H3	174.1°	177.2°
O4	C4	C5	H5	178.7°	177.7°
C4	C5	C6	O5	141.2°	119.9°
C4	C5	C6	H5	109.5°	120.0°
C4	C5	O5	H5	108.4°	120.0°
C4	C5	C6	O6	174.1°	175.0°
C4	C5	O5	C1	51.2°	61.2°
C5	C4	C3	H3	71.0°	62.9°
C4	C5	C6	H6C2	53.6°	55.0°
C4	C5	C6	H6C1	65.5°	65.0°
C5	C4	O4	HC	60.7°	179.7°
C6	C5	O5	H5	108.8°	120.1°
C5	C6	O6	H6C2	120.5°	120.0°
C5	C6	O6	H6C1	120.5°	120.0°
C6	C5	O5	C1	166.0°	178.9°
C6	C5	C4	H4	47.7°	62.5°
C5	C6	H6C2	H6C1	118.6°	120.0°
C5	C6	O6	H6	180.0°	180.0°
O5	C5	C6	O6	44.7°	65.1°
C5	O5	C1	C2	52.4°	61.2°
C5	O5	C1	O1	170.9°	178.8°
C5	O5	C1	H1	68.2°	58.8°
O5	C5	C4	H4	170.7°	177.6°
O5	C5	C6	H6C2	165.1°	174.9°
O5	C5	C6	H6C1	75.8°	54.9°
O2	C2	C1	H2	118.0°	120.1°
O2	C2	C1	O5	175.3°	177.6°
O2	C2	C1	O1	67.3°	62.4°
O2	C2	C1	H1	54.1°	57.6°
O2	C2	C3	H3	53.5°	57.1°
O6	C6	C5	H5	64.6°	55.0°
O6	C6	H6C2	H6C1	118.6°	120.0°
C2	C1	O5	O1	118.5°	120.0°
C2	C1	O5	H1	120.6°	120.0°
C2	C1	O1	H1	120.0°	120.1°
C2	C1	O1	C4'	171.2°	175.0°
C1	C2	C3	H3	67.8°	62.9°
C1	C2	O2	HA	56.8°	60.0°
O5	C1	O1	H1	120.2°	120.0°
O5	C1	O1	C4'	69.1°	65.0°
O5	C1	C2	H2	66.7°	62.3°
C1	O5	C5	H5	57.2°	58.8°
C1	O1	C4'	C5'	105.5°	150.0°
C1	O1	C4'	C3'	134.8°	90.4°
O1	C1	C2	H2	50.7°	57.7°
C1	O1	C4'	H4'	14.6°	29.9°
O6'	C6'	C5'	H6'2	120.0°	120.0°
O6'	C6'	C5'	H6'1	120.0°	119.9°
O6'	C6'	C5'	C4'	57.8°	175.0°
O6'	C6'	C5'	O5'	64.0°	65.0°
O6'	C6'	C5'	H5'	178.1°	55.1°
O6'	C6'	H6'2	H6'1	120.0°	120.0°
C6'	C5'	C4'	O1	62.4°	62.5°
C6'	C5'	C4'	O5'	120.3°	120.0°
C6'	C5'	C4'	H5'	120.3°	119.9°
C6'	C5'	C4'	C3'	178.3°	177.6°
C6'	C5'	O5'	H5'	117.2°	120.0°
C6'	C5'	O5'	C1'	177.7°	178.8°
C6'	C5'	C4'	H4'	58.3°	57.7°
C5'	C6'	H6'2	H6'1	120.0°	120.0°
C5'	C6'	O6'	H6'	180.0°	180.0°
O1	C4'	C5'	C3'	119.3°	119.9°
O1	C4'	C5'	H4'	120.7°	120.2°
O1	C4'	C3'	H4'	120.8°	120.2°
O1	C4'	C5'	O5'	177.4°	177.5°
O1	C4'	C3'	O3'	61.5°	63.2°
O1	C4'	C3'	C2'	175.0°	176.9°
C4'	O1	C1	H1	51.1°	55.0°
O1	C4'	C3'	H3'	56.7°	57.0°
O1	C4'	C5'	H5'	57.9°	57.4°
C5'	C4'	C3'	H4'	119.9°	119.9°
C4'	C5'	O5'	H5'	118.8°	120.0°
C4'	C5'	O5'	C1'	58.3°	61.2°
C5'	C4'	C3'	O3'	179.2°	176.9°
C5'	C4'	C3'	C2'	55.7°	57.0°
C5'	C4'	C3'	H3'	62.6°	62.9°
C4'	C5'	C6'	H6'2	62.2°	55.0°
C4'	C5'	C6'	H6'1	177.8°	65.1°
C3'	C4'	C5'	O5'	58.1°	57.6°
C4'	C3'	O3'	C2'	124.3°	119.6°
C4'	C3'	O3'	H3'	117.8°	120.2°
C4'	C3'	C2'	H3'	118.1°	119.9°
C4'	C3'	C2'	C1'	52.1°	57.0°
C4'	C3'	C2'	O2'	173.6°	176.9°
C4'	C3'	C2'	H2'	67.2°	62.9°
C3'	C4'	C5'	H5'	61.4°	62.5°
C4'	C3'	O3'	HF	180.0°	179.6°
C5'	O5'	C1'	C2'	54.0°	61.2°
C5'	O5'	C1'	O1'	71.9°	58.8°
C5'	O5'	C1'	H1'	170.7°	178.9°
O5'	C5'	C4'	H4'	61.9°	62.3°
O5'	C5'	C6'	H6'2	176.0°	175.0°
O5'	C5'	C6'	H6'1	55.9°	54.9°
O5'	C1'	C2'	C3'	50.0°	57.6°
O5'	C1'	C2'	O1'	123.5°	120.0°
O5'	C1'	C2'	H1'	117.0°	120.0°
O5'	C1'	C2'	O2'	172.4°	177.5°
O5'	C1'	O1'	H1'	116.6°	120.1°
O5'	C1'	C2'	H2'	69.5°	62.3°
C1'	O5'	C5'	H5'	60.5°	58.8°
O5'	C1'	O1'	HD	180.0°	60.0°
O3'	C3'	C2'	H3'	118.0°	120.2°
O3'	C3'	C2'	C1'	176.0°	176.9°
O3'	C3'	C2'	O2'	62.5°	63.2°
O3'	C3'	C2'	H2'	56.7°	57.0°
O3'	C3'	C4'	H4'	59.3°	57.0°
C3'	C2'	C1'	O2'	122.3°	119.9°
C3'	C2'	C1'	H2'	119.5°	120.0°
C3'	C2'	O2'	H2'	118.9°	120.2°
C3'	C2'	C1'	O1'	73.5°	62.4°
C3'	C2'	C1'	H1'	167.1°	177.6°
C2'	C3'	C4'	H4'	64.2°	62.9°
C3'	C2'	O2'	HE	180.0°	179.7°
C2'	C3'	O3'	HF	55.7°	60.0°
C1'	C2'	O2'	H2'	117.6°	120.1°
C2'	C1'	O1'	H1'	118.5°	120.0°
C1'	C2'	C3'	H3'	66.0°	62.9°
C2'	C1'	O1'	HD	55.2°	180.0°
C1'	C2'	O2'	HE	56.5°	60.0°
O2'	C2'	C1'	O1'	48.8°	57.5°
O2'	C2'	C1'	H1'	70.6°	62.5°
O2'	C2'	C3'	H3'	55.5°	57.0°
O1'	C1'	C2'	H2'	167.0°	177.7°
H1	C1	C2	H2	172.1°	177.7°
H2	C2	C3	H3	173.4°	177.2°
H2	C2	O2	HA	60.5°	60.1°
H3	C3	C4	H4	51.4°	57.1°
H3	C3	O3	HB	61.3°	59.8°
H4	C4	C5	H5	61.8°	57.6°
H4	C4	O4	HC	57.8°	60.1°
H5	C5	C6	H6C2	55.8°	65.0°
H5	C5	C6	H6C1	174.9°	175.0°
H6C2	C6	O6	H6	59.5°	60.0°
H6C1	C6	O6	H6	59.5°	60.0°
H1'	C1'	C2'	H2'	47.6°	57.7°
H1'	C1'	O1'	HD	63.3°	60.1°
H2'	C2'	C3'	H3'	174.7°	177.2°
H2'	C2'	O2'	HE	61.1°	60.1°
H3'	C3'	C4'	H4'	177.4°	177.2°
H3'	C3'	O3'	HF	62.2°	60.2°
H4'	C4'	C5'	H5'	178.6°	177.6°
H5'	C5'	C6'	H6'2	58.1°	65.0°
H5'	C5'	C6'	H6'1	61.9°	175.0°
H6'2	C6'	O6'	H6'	60.0°	60.0°
H6'1	C6'	O6'	H6'	60.0°	60.0°

Release date:	2020-07-29
Last modified:	2020-07-29
Processing site:	RCSB