Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_900002

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O6'C6'sing1.43Å1.46Å
C6'C5'sing1.53Å1.51Å
C5'O2'sing1.44Å1.59Å
C5'C4'sing1.55Å1.37Å
C4'O4'sing1.43Å1.43Å
C4'C3'sing1.55Å1.61Å
C3'C2'sing1.54Å1.39Å
C3'O3'sing1.43Å1.41Å
O2'C2'sing1.44Å1.44Å
C2'C1'sing1.53Å1.48Å
C2'O1sing1.43Å1.50Å
C1'O1'sing1.43Å1.43Å
O1C1sing1.43Å1.44Å
C1O5sing1.43Å1.46Å
C1C2sing1.53Å1.51Å
C2O2sing1.43Å1.46Å
C2C3sing1.53Å1.48Å
C3O3sing1.43Å1.47Å
C3C4sing1.53Å1.49Å
C4C5sing1.53Å1.51Å
C4O4sing1.43Å1.43Å
C5O5sing1.43Å1.44Å
C5C6sing1.53Å1.51Å
C6O6sing1.43Å1.43Å
O6C1Xsing1.43Å1.42Å
C1XO5Xsing1.43Å1.46Å
C1XC2Xsing1.53Å1.50Å
O5XC5Xsing1.43Å1.47Å
C5XC6Xsing1.53Å1.50Å
C5XC4Xsing1.53Å1.52Å
C6XO6Xsing1.43Å1.41Å
C4XO4Xsing1.43Å1.43Å
C4XC3Xsing1.53Å1.50Å
C3XO3Xsing1.43Å1.45Å
C3XC2Xsing1.53Å1.50Å
C2XO2Xsing1.43Å1.44Å
O6'HO6'sing0.97Å0.95Å
C6'H6'sing1.09Å1.10Å
C6'H6'Asing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
O4'HO4'sing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C1'H1'sing1.09Å1.10Å
C1'H1'Asing1.09Å1.10Å
O1'HO1'sing0.97Å0.95Å
C1H1sing1.09Å1.10Å
C2H2sing1.09Å1.10Å
O2HO2sing0.97Å0.95Å
C3H3sing1.09Å1.10Å
O3HO3sing0.97Å0.95Å
C4H4sing1.09Å1.10Å
O4HO4sing0.97Å0.95Å
C5H5sing1.09Å1.10Å
C6H6Asing1.09Å1.10Å
C6H6sing1.09Å1.10Å
C1XH1Xsing1.09Å1.10Å
C5XH5Xsing1.09Å1.10Å
C6XH6XAsing1.09Å1.10Å
C6XH6Xsing1.09Å1.10Å
O6XHO6Xsing0.97Å0.95Å
C4XH4Xsing1.09Å1.10Å
O4XHO4Xsing0.97Å0.95Å
C3XH3Xsing1.09Å1.10Å
O3XHO3Xsing0.97Å0.95Å
C2XH2Xsing1.09Å1.10Å
O2XHO2Xsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O6'C6'C5'107.2°109.4°
C6'O6'HO6'109.5°114.0°
O6'C6'H6'110.0°109.5°
O6'C6'H6'A110.0°109.5°
C6'C5'O2'108.8°110.6°
C6'C5'C4'115.0°110.6°
C5'C6'H6'110.0°109.4°
C5'C6'H6'A110.0°109.5°
C6'C5'H5'108.6°110.6°
O2'C5'C4'105.8°103.5°
C5'O2'C2'105.9°107.0°
O2'C5'H5'107.7°110.6°
C5'C4'O4'112.2°110.9°
C5'C4'C3'102.5°102.1°
C4'C5'H5'110.5°110.7°
C5'C4'H4'111.7°110.9°
O4'C4'C3'111.0°110.9°
O4'C4'H4'110.7°110.8°
C4'O4'HO4'109.5°114.0°
C4'C3'C2'104.2°104.2°
C4'C3'O3'112.6°110.5°
C3'C4'H4'108.4°110.9°
C4'C3'H3'106.2°110.5°
C2'C3'O3'115.8°110.5°
C3'C2'O2'107.9°107.3°
C3'C2'C1'124.6°109.9°
C3'C2'O1102.5°109.9°
C2'C3'H3'108.9°110.5°
O3'C3'H3'108.6°110.5°
C3'O3'HO3'109.5°114.0°
O2'C2'C1'112.4°109.9°
O2'C2'O1100.4°109.9°
C1'C2'O1105.8°110.0°
C2'C1'O1'102.1°109.5°
C2'C1'H1'111.3°109.5°
C2'C1'H1'A111.3°109.5°
C2'O1C1121.6°114.0°
O1'C1'H1'111.3°109.5°
O1'C1'H1'A111.3°109.5°
C1'O1'HO1'109.5°114.0°
O1C1O5111.2°109.5°
O1C1C2109.5°109.5°
O1C1H1110.1°109.5°
O5C1C2107.0°109.4°
C1O5C5117.3°114.1°
O5C1H1109.8°109.5°
C1C2O2108.7°109.5°
C1C2C3108.6°109.2°
C2C1H1109.2°109.5°
C1C2H2109.0°109.5°
O2C2C3111.6°109.6°
O2C2H2109.6°109.5°
C2O2HO2109.5°114.0°
C2C3O3111.5°109.6°
C2C3C4110.1°109.1°
C3C2H2109.4°109.6°
C2C3H3109.5°109.5°
O3C3C4106.8°109.6°
O3C3H3109.6°109.5°
C3O3HO3109.5°114.0°
C3C4C5112.6°109.2°
C3C4O4109.0°109.6°
C4C3H3109.3°109.6°
C3C4H4109.5°109.5°
C5C4O4106.1°109.5°
C4C5O5111.7°109.4°
C4C5C6109.2°109.5°
C5C4H4109.3°109.5°
C4C5H5109.8°109.4°
O4C4H4110.4°109.6°
C4O4HO4109.5°114.0°
O5C5C6105.5°109.5°
O5C5H5110.8°109.5°
C5C6O6111.4°109.5°
C6C5H5109.8°109.5°
C5C6H6A109.0°109.5°
C5C6H6109.0°109.5°
C6O6C1X112.8°114.0°
O6C6H6A109.0°109.5°
O6C6H6109.0°109.5°
O6C1XO5X110.6°109.5°
O6C1XC2X111.2°109.5°
O6C1XH1X108.9°109.5°
O5XC1XC2X110.0°109.4°
C1XO5XC5X113.4°114.1°
O5XC1XH1X108.3°109.5°
C1XC2XC3X109.2°109.2°
C1XC2XO2X109.4°109.5°
C2XC1XH1X107.8°109.5°
C1XC2XH2X109.1°109.5°
O5XC5XC6X105.6°109.4°
O5XC5XC4X111.9°109.4°
O5XC5XH5X108.1°109.5°
C6XC5XC4X115.6°109.5°
C5XC6XO6X112.4°109.5°
C6XC5XH5X107.8°109.4°
C5XC6XH6XA108.7°109.5°
C5XC6XH6X108.7°109.4°
C5XC4XO4X107.0°109.5°
C5XC4XC3X110.9°109.2°
C4XC5XH5X107.6°109.5°
C5XC4XH4X108.8°109.5°
O6XC6XH6XA108.7°109.5°
O6XC6XH6X108.7°109.5°
C6XO6XHO6X109.5°114.0°
O4XC4XC3X111.2°109.5°
O4XC4XH4X110.0°109.5°
C4XO4XHO4X109.5°114.0°
C4XC3XO3X110.3°109.5°
C4XC3XC2X110.9°109.0°
C3XC4XH4X109.0°109.6°
C4XC3XH3X109.1°109.6°
O3XC3XC2X107.8°109.5°
O3XC3XH3X109.7°109.5°
C3XO3XHO3X109.5°114.0°
C3XC2XO2X110.2°109.5°
C2XC3XH3X109.0°109.6°
C3XC2XH2X109.0°109.5°
O2XC2XH2X110.0°109.6°
C2XO2XHO2X109.5°114.0°
H6'C6'H6'A109.5°109.5°
H1'C1'H1'A109.5°109.4°
H6AC6H6109.5°109.4°
H6XAC6XH6X109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O6'C6'C5'H6'119.7°120.0°
O6'C6'C5'H6'A119.7°120.0°
O6'C6'C5'O2'65.0°61.7°
O6'C6'C5'C4'176.5°175.8°
O6'C6'H6'H6'A121.0°120.0°
O6'C6'C5'H5'52.0°61.2°
C6'C5'O2'C4'124.2°118.5°
C6'C5'O2'H5'117.6°122.9°
C6'C5'C4'H5'123.5°122.9°
C6'C5'C4'O4'92.5°86.2°
C6'C5'C4'C3'148.3°155.5°
C6'C5'O2'C2'135.6°158.6°
C5'C6'O6'HO6'180.0°174.2°
C5'C6'H6'H6'A121.0°120.0°
C6'C5'C4'H4'32.5°37.3°
O2'C5'C4'H5'116.3°118.6°
O2'C5'C4'O4'147.3°155.2°
O2'C5'C4'C3'28.1°37.0°
C5'O2'C2'C3'14.2°26.5°
C5'O2'C2'C1'155.2°92.9°
C5'O2'C2'O192.7°145.9°
O2'C5'C6'H6'54.7°58.3°
O2'C5'C6'H6'A175.4°178.2°
O2'C5'C4'H4'87.7°81.2°
C5'C4'O4'C3'114.0°112.7°
C5'C4'O4'H4'125.6°123.6°
C5'C4'C3'H4'118.2°118.2°
C5'C4'C3'C2'38.1°20.9°
C5'C4'C3'O3'164.4°139.5°
C4'C5'O2'C2'11.5°40.1°
C4'C5'C6'H6'63.8°55.8°
C4'C5'C6'H6'A56.8°64.1°
C5'C4'O4'HO4'180.0°61.5°
C5'C4'C3'H3'76.9°97.8°
O4'C4'C3'H4'121.8°123.6°
O4'C4'C3'C2'158.1°139.1°
O4'C4'C3'O3'75.6°102.3°
O4'C4'C5'H5'31.0°36.7°
O4'C4'C3'H3'43.1°20.4°
C4'C3'C2'O3'124.2°118.7°
C4'C3'C2'H3'113.0°118.7°
C4'C3'O3'H3'117.4°122.6°
C4'C3'C2'O2'30.9°2.1°
C4'C3'C2'C1'166.0°117.4°
C4'C3'C2'O174.5°121.5°
C3'C4'C5'H5'88.2°81.6°
C3'C4'O4'HO4'66.0°174.2°
C4'C3'O3'HO3'180.0°61.4°
C2'C3'O3'H3'122.9°122.6°
C3'C2'O2'C1'141.1°119.4°
C3'C2'O2'O1106.9°119.4°
C3'C2'C1'O1118.0°121.1°
C3'C2'C1'O1'57.8°173.8°
C3'C2'O1C1172.1°171.2°
C2'C3'C4'H4'80.1°97.3°
C2'C3'O3'HO3'60.3°176.2°
C3'C2'C1'H1'176.6°66.1°
C3'C2'C1'H1'A60.9°53.8°
O3'C3'C2'O2'155.1°116.6°
O3'C3'C2'C1'69.8°123.9°
O3'C3'C2'O149.7°2.8°
O3'C3'C4'H4'46.1°21.3°
O2'C2'C1'O1108.6°121.1°
O2'C2'C1'O1'75.6°56.0°
O2'C2'O1C161.0°53.4°
C2'O2'C5'H5'106.8°78.6°
O2'C2'C3'H3'82.1°120.7°
O2'C2'C1'H1'43.2°176.0°
O2'C2'C1'H1'A165.6°64.0°
C2'C1'O1'H1'118.8°120.0°
C2'C1'O1'H1'A118.8°120.0°
C1'C2'O1C156.0°67.7°
C1'C2'C3'H3'53.0°1.3°
C2'C1'H1'H1'A123.4°119.9°
C2'C1'O1'HO1'180.0°180.0°
O1C2'C1'O1'175.8°65.1°
C2'O1C1O5108.9°91.1°
C2'O1C1C2133.1°149.0°
O1C2'C3'H3'172.5°119.8°
O1C2'C1'H1'65.4°55.0°
O1C2'C1'H1'A57.0°174.9°
C2'O1C1H113.1°28.9°
O1'C1'H1'H1'A123.5°120.0°
O1C1O5C2119.6°120.0°
O1C1O5H1122.1°120.1°
O1C1C2H1120.6°120.1°
O1C1C2O263.4°57.6°
O1C1C2C358.2°62.4°
O1C1O5C563.3°58.8°
O1C1C2H2177.3°177.6°
O5C1C2H1118.7°119.9°
O5C1C2O2176.0°177.5°
O5C1C2C362.4°57.6°
C1O5C5C447.3°61.1°
C1O5C5C6165.8°178.8°
O5C1C2H256.7°62.4°
C1O5C5H575.5°58.8°
C1C2O2C3119.8°119.7°
C1C2O2H2119.0°120.1°
C1C2C3H2118.8°120.0°
C1C2C3O3178.2°176.9°
C1C2C3C463.4°56.9°
C2C1O5C556.2°61.2°
C1C2O2HO2180.0°60.0°
C1C2C3H356.8°63.0°
O2C2C3H2121.4°120.1°
O2C2C3O358.4°63.2°
O2C2C3C4176.8°176.9°
O2C2C1H157.3°62.5°
O2C2C3H363.0°57.0°
C2C3O3C4120.4°119.6°
C2C3O3H3121.3°120.1°
C2C3C4H3120.3°119.9°
C2C3C4C553.7°56.9°
C2C3C4O4171.2°176.9°
C3C2C1H1178.8°177.5°
C3C2O2HO260.3°179.7°
C2C3O3HO3180.0°59.9°
C2C3C4H468.0°62.9°
O3C3C4H3118.5°120.2°
O3C3C4C5174.9°176.9°
O3C3C4O467.6°63.2°
O3C3C2H263.0°56.9°
O3C3C4H453.2°57.0°
C3C4C5O4119.1°120.0°
C3C4C5H4121.9°119.8°
C3C4O4H4120.3°120.1°
C3C4C5O544.0°57.5°
C3C4C5C6160.3°177.6°
C4C3C2H255.4°63.0°
C4C3O3HO359.6°179.6°
C3C4O4HO4180.0°59.9°
C3C4C5H579.3°62.4°
C5C4O4H4118.3°120.1°
C4C5O5C6118.5°120.0°
C4C5O5H5122.8°119.9°
C4C5C6H5120.4°120.0°
C4C5C6O6163.4°177.4°
C5C4C3H366.6°62.9°
C5C4O4HO458.6°179.6°
C4C5C6H6A43.1°57.3°
C4C5C6H676.3°62.6°
O4C4C5O5163.1°177.5°
O4C4C5C680.6°62.4°
O4C4C3H350.8°57.0°
O4C4C5H539.8°57.6°
O5C5C6H5119.4°120.0°
O5C5C6O676.4°62.6°
C5O5C1H1174.6°178.9°
O5C5C4H477.9°62.3°
O5C5C6H6A163.3°177.3°
O5C5C6H643.9°57.3°
C5C6O6H6A120.3°120.1°
C5C6O6H6120.3°120.0°
C5C6O6C1X163.5°173.7°
C6C5C4H438.4°57.7°
C5C6H6AH6119.1°120.0°
C6O6C1XO5X69.3°66.6°
C6O6C1XC2X168.2°173.5°
O6C6C5H543.0°57.4°
O6C6H6AH6119.1°120.0°
C6O6C1XH1X49.6°53.5°
O6C1XO5XC2X123.2°120.0°
O6C1XO5XH1X119.2°120.0°
O6C1XC2XH1X119.3°120.0°
O6C1XO5XC5X65.7°58.8°
O6C1XC2XC3X63.0°62.4°
O6C1XC2XO2X57.7°57.5°
C1XO6C6H6A76.2°53.6°
C1XO6C6H643.2°66.3°
O6C1XC2XH2X177.9°177.7°
O5XC1XC2XH1X117.9°120.0°
C1XO5XC5XC6X179.3°178.8°
C1XO5XC5XC4X52.8°61.1°
O5XC1XC2XC3X59.8°57.6°
O5XC1XC2XO2X179.5°177.5°
C1XO5XC5XH5X65.5°58.9°
O5XC1XC2XH2X59.3°62.3°
C2XC1XO5XC5X57.5°61.1°
C1XC2XC3XC4X59.4°57.0°
C1XC2XC3XO3X179.7°176.8°
C1XC2XC3XO2X120.1°119.9°
C1XC2XC3XH2X119.1°119.9°
C1XC2XO2XH2X119.7°120.2°
C1XC2XC3XH3X60.7°62.9°
C1XC2XO2XHO2X180.0°60.1°
O5XC5XC6XC4X124.3°120.0°
O5XC5XC6XH5X115.4°120.0°
O5XC5XC4XH5X118.6°120.0°
O5XC5XC6XO6X59.5°65.0°
O5XC5XC4XO4X70.9°62.3°
O5XC5XC4XC3X50.4°57.6°
C5XO5XC1XH1X175.1°178.8°
O5XC5XC6XH6XA60.9°175.0°
O5XC5XC6XH6X180.0°55.1°
O5XC5XC4XH4X170.3°177.6°
C6XC5XC4XH5X120.5°120.0°
C5XC6XO6XH6XA120.4°120.0°
C5XC6XO6XH6X120.4°120.0°
C6XC5XC4XO4X50.0°57.7°
C6XC5XC4XC3X171.4°177.6°
C5XC6XH6XAH6X118.7°120.0°
C5XC6XO6XHO6X180.0°180.0°
C6XC5XC4XH4X68.8°62.4°
C4XC5XC6XO6X64.7°175.1°
C5XC4XO4XC3X121.2°119.7°
C5XC4XO4XH4X117.9°120.1°
C5XC4XC3XH4X119.7°119.9°
C5XC4XC3XO3X174.0°176.9°
C5XC4XC3XC2X54.6°57.0°
C4XC5XC6XH6XA174.8°55.0°
C4XC5XC6XH6X55.7°64.9°
C5XC4XO4XHO4X180.0°180.0°
C5XC4XC3XH3X65.4°63.0°
O6XC6XC5XH5X174.9°55.0°
O6XC6XH6XAH6X118.6°120.0°
O4XC4XC3XH4X121.4°120.2°
O4XC4XC3XO3X55.1°56.9°
O4XC4XC3XC2X64.3°62.9°
O4XC4XC5XH5X170.5°177.7°
O4XC4XC3XH3X175.7°177.1°
C4XC3XO3XC2X121.3°119.5°
C4XC3XO3XH3X120.2°120.2°
C4XC3XC2XH3X120.1°119.9°
C4XC3XC2XO2X179.5°176.9°
C3XC4XC5XH5X68.2°62.4°
C3XC4XO4XHO4X58.8°60.3°
C4XC3XO3XHO3X180.0°175.6°
C4XC3XC2XH2X59.7°62.9°
O3XC3XC2XH3X119.0°120.2°
O3XC3XC2XO2X59.6°63.3°
O3XC3XC4XH4X66.3°63.2°
O3XC3XC2XH2X61.2°57.0°
C3XC2XO2XH2X120.2°120.2°
C3XC2XC1XH1X177.7°177.6°
C2XC3XC4XH4X174.3°176.9°
C2XC3XO3XHO3X58.7°56.0°
C3XC2XO2XHO2X60.0°179.7°
O2XC2XC1XH1X61.7°62.5°
O2XC2XC3XH3X59.4°56.9°
HO6'O6'C6'H6'60.3°65.9°
HO6'O6'C6'H6'A60.3°54.1°
H6'C6'C5'H5'171.7°178.8°
H6'AC6'C5'H5'67.6°58.9°
H5'C5'C4'H4'156.0°160.2°
H4'C4'O4'HO4'54.4°62.1°
H4'C4'C3'H3'164.9°144.0°
H3'C3'O3'HO3'62.6°61.2°
H1'C1'O1'HO1'61.2°60.0°
H1'AC1'O1'HO1'61.2°60.0°
H1C1C2H262.1°57.5°
H2C2O2HO261.0°60.1°
H2C2C3H3175.6°177.1°
H3C3O3HO358.7°60.2°
H3C3C4H4171.6°177.2°
H4C4O4HO459.7°60.2°
H4C4C5H5158.8°177.7°
H5C5C6H6A77.3°62.6°
H5C5C6H6163.3°177.4°
H1XC1XC2XH2X58.6°57.7°
H5XC5XC6XH6XA54.5°65.0°
H5XC5XC6XH6X64.7°175.0°
H5XC5XC4XH4X51.7°57.6°
H6XAC6XO6XHO6X59.5°60.0°
H6XC6XO6XHO6X59.6°60.0°
H4XC4XO4XHO4X62.1°59.9°
H4XC4XC3XH3X54.3°57.0°
H3XC3XO3XHO3X59.8°64.2°
H3XC3XC2XH2X179.8°177.2°
H2XC2XO2XHO2X60.2°60.1°

221716

PDB entries from 2024-06-26

PDB statisticsPDBj update infoContact PDBjnumon