Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_002372

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1O1doub1.21Å1.25Å
C1C2sing1.51Å1.53Å
C2H1sing1.09Å1.10Å
C2H2sing1.09Å1.10Å
C2H3sing1.09Å1.10Å
N1C3sing1.47Å1.50Å
N1H4sing0.97Å1.00Å
C3C4sing1.51Å1.55Å
C3C5sing1.53Å1.56Å
C3H5sing1.09Å1.10Å
C4O2doub1.21Å1.25Å
C5C6sing1.53Å1.49Å
C5C7sing1.53Å1.49Å
C5H6sing1.09Å1.10Å
C6H7sing1.09Å1.10Å
C6H8sing1.09Å1.10Å
C6H9sing1.09Å1.10Å
C7H10sing1.09Å1.10Å
C7H11sing1.09Å1.10Å
C7H12sing1.09Å1.10Å
N2C8sing1.46Å1.48Å
N2H13sing0.97Å1.00Å
C8C9sing1.51Å1.52Å
C8C10sing1.53Å1.52Å
C8H14sing1.09Å1.10Å
C9O3doub1.21Å1.24Å
C10C11sing1.53Å1.52Å
C10H15sing1.09Å1.10Å
C10H16sing1.09Å1.10Å
C11C12sing1.53Å1.52Å
C11H17sing1.09Å1.10Å
C11H18sing1.09Å1.10Å
C12N3sing1.46Å1.47Å
C12H19sing1.09Å1.10Å
C12H20sing1.09Å1.10Å
N3C13sing1.37Å1.34Å
N3H21sing0.97Å1.00Å
C13N4sing1.33Å1.32Å
C13N5doub1.33Å1.32Å
N4H22sing0.97Å1.00Å
N4H23sing0.97Å1.00Å
N5H24sing0.97Å1.00Å
N5H25sing0.97Å1.00Å
N6C14sing1.46Å1.46Å
N6H26sing0.97Å1.00Å
C14C15sing1.51Å1.54Å
C14C16sing1.53Å1.54Å
C14H27sing1.09Å1.10Å
C15O4doub1.21Å1.24Å
C16C17sing1.53Å1.51Å
C16H28sing1.09Å1.10Å
C16H29sing1.09Å1.10Å
C17S1sing1.81Å1.82Å
C17H30sing1.09Å1.10Å
C17H31sing1.09Å1.10Å
S1C18sing1.81Å1.80Å
C18H32sing1.09Å1.10Å
C18H33sing1.09Å1.10Å
C18H34sing1.09Å1.10Å
O5C21sing1.43Å1.44Å
C21C22sing1.53Å1.33Å
C21C19sing1.53Å1.58Å
C22CL1sing1.80Å1.71Å
C19C20sing1.53Å1.65Å
C19N7sing1.46Å1.45Å
N7H35sing0.97Å1.00Å
C19H36sing1.09Å1.10Å
C20H37sing1.09Å1.10Å
C20H38sing1.09Å1.10Å
C20H39sing1.09Å1.10Å
C21H40sing1.09Å1.10Å
O5H41sing0.97Å0.95Å
C22H42sing1.09Å1.10Å
C22H43sing1.09Å1.10Å
C1N1sing1.35Å1.35Å
C4N2sing1.35Å1.34Å
C9N6sing1.35Å1.33Å
C15N7sing1.35Å1.33Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C1C2118.9°120.0°
O1C1N1124.9°120.0°
C1C2H1109.5°109.5°
C1C2H2109.5°109.4°
C1C2H3109.4°109.5°
C2C1N1116.2°120.0°
H1C2H2109.4°109.4°
H1C2H3109.5°109.5°
H2C2H3109.5°109.5°
C3N1H4117.2°119.9°
N1C3C4114.5°109.5°
N1C3C5112.8°109.4°
N1C3H5106.6°109.5°
C3N1C1125.5°120.0°
H4N1C1117.2°120.1°
C4C3C5110.2°109.5°
C4C3H5106.1°109.5°
C3C4O2120.4°120.0°
C3C4N2116.8°120.0°
C5C3H5106.0°109.4°
C3C5C6111.5°109.4°
C3C5C7112.1°109.4°
C3C5H6109.3°109.4°
O2C4N2122.7°120.0°
C6C5C7103.6°109.5°
C6C5H6110.1°109.5°
C5C6H7109.5°109.5°
C5C6H8109.5°109.4°
C5C6H9109.5°109.5°
C7C5H6110.1°109.5°
C5C7H10109.5°109.5°
C5C7H11109.5°109.4°
C5C7H12109.5°109.5°
H7C6H8109.5°109.4°
H7C6H9109.5°109.6°
H8C6H9109.4°109.4°
H10C7H11109.4°109.4°
H10C7H12109.4°109.5°
H11C7H12109.5°109.5°
C8N2H13119.3°120.0°
N2C8C9112.4°109.5°
N2C8C10112.0°109.5°
N2C8H14106.0°109.5°
C8N2C4121.4°120.0°
H13N2C4119.3°120.0°
C9C8C10114.3°109.5°
C9C8H14105.6°109.4°
C8C9O3121.0°120.0°
C8C9N6115.5°120.0°
C10C8H14105.6°109.5°
C8C10C11111.7°109.5°
C8C10H15108.9°109.5°
C8C10H16108.9°109.5°
O3C9N6122.9°120.0°
C11C10H15108.9°109.5°
C11C10H16108.9°109.4°
C10C11C12111.1°109.5°
C10C11H17109.0°109.5°
C10C11H18109.1°109.5°
H15C10H16109.5°109.5°
C12C11H17109.1°109.4°
C12C11H18109.1°109.5°
C11C12N3117.2°109.5°
C11C12H19107.5°109.4°
C11C12H20107.5°109.5°
H17C11H18109.4°109.5°
N3C12H19107.5°109.5°
N3C12H20107.5°109.5°
C12N3C13127.4°120.0°
C12N3H21116.3°120.0°
H19C12H20109.5°109.5°
C13N3H21116.3°120.0°
N3C13N4120.3°120.0°
N3C13N5118.1°120.0°
N4C13N5121.6°120.0°
C13N4H22120.0°120.0°
C13N4H23120.0°120.0°
C13N5H24120.0°120.0°
C13N5H25120.0°120.0°
H22N4H23120.0°120.0°
H24N5H25120.0°120.0°
C14N6H26119.2°120.0°
N6C14C15105.2°109.5°
N6C14C16116.5°109.5°
N6C14H27109.9°109.5°
C14N6C9121.6°120.0°
H26N6C9119.2°120.0°
C15C14C16107.3°109.5°
C15C14H27108.8°109.4°
C14C15O4124.4°120.0°
C14C15N7107.0°120.0°
C16C14H27108.8°109.5°
C14C16C17120.2°109.5°
C14C16H28106.7°109.5°
C14C16H29106.7°109.5°
O4C15N7128.6°120.0°
C17C16H28106.7°109.5°
C17C16H29106.7°109.5°
C16C17S1112.9°109.5°
C16C17H30108.6°109.5°
C16C17H31108.6°109.4°
H28C16H29109.5°109.4°
S1C17H30108.6°109.5°
S1C17H31108.6°109.5°
C17S1C18101.4°103.0°
H30C17H31109.5°109.5°
S1C18H32109.5°109.5°
S1C18H33109.5°109.5°
S1C18H34109.5°109.5°
H32C18H33109.5°109.5°
H32C18H34109.4°109.4°
H33C18H34109.5°109.5°
O5C21C22120.3°109.5°
O5C21C19110.1°109.5°
O5C21H40105.2°109.5°
C21O5H41109.5°114.0°
C22C21C19109.5°109.4°
C21C22CL1118.0°109.5°
C22C21H40106.4°109.4°
C21C22H42107.3°109.5°
C21C22H43107.3°109.5°
C21C19C20120.1°109.4°
C21C19N7102.0°109.5°
C21C19H36109.1°109.5°
C19C21H40103.9°109.5°
CL1C22H42107.3°109.4°
CL1C22H43107.3°109.5°
C20C19N7106.4°109.5°
C20C19H36108.2°109.4°
C19C20H37109.5°109.4°
C19C20H38109.5°109.5°
C19C20H39109.5°109.5°
C19N7H35119.1°120.0°
N7C19H36110.7°109.5°
C19N7C15121.8°120.0°
H35N7C15119.1°120.0°
H37C20H38109.5°109.5°
H37C20H39109.5°109.5°
H38C20H39109.5°109.5°
H42C22H43109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C1C2N1178.8°179.7°
O1C1C2H10.0°90.0°
O1C1C2H2120.0°150.1°
O1C1C2H3120.0°30.0°
O1C1N1C39.6°0.0°
O1C1N1H4170.3°179.9°
C1C2H1H2120.0°119.9°
C1C2H1H3120.0°120.0°
C1C2H2H3120.0°120.0°
C2C1N1C3171.6°179.7°
C2C1N1H48.4°0.2°
H1C2H2H3120.0°120.0°
H1C2C1N1178.8°89.7°
H2C2C1N158.8°30.3°
H3C2C1N161.2°150.3°
C3N1H4C1180.0°179.9°
N1C3C4C5128.4°120.0°
N1C3C4H5117.3°120.1°
N1C3C5H5116.3°119.9°
N1C3C4O283.6°0.1°
N1C3C5C6162.7°60.0°
N1C3C5C781.6°60.0°
N1C3C5H640.8°180.0°
N1C3C4N297.2°180.0°
H4N1C3C4129.4°24.9°
H4N1C3C52.3°95.1°
H4N1C3H5113.6°145.0°
C4C3C5H5114.4°120.0°
C3C4O2N2179.1°179.9°
C4C3C5C633.4°180.0°
C4C3C5C7149.0°60.0°
C4C3C5H688.6°60.0°
C3C4N2C8176.5°180.0°
C3C4N2H133.6°0.1°
C4C3N1C150.6°155.0°
C5C3C4O244.8°120.1°
C3C5C6C7120.8°119.9°
C3C5C6H6121.5°120.0°
C3C5C7H6121.9°120.0°
C3C5C6H7180.0°60.1°
C3C5C6H860.0°180.0°
C3C5C6H960.0°60.1°
C3C5C7H10180.0°60.1°
C3C5C7H1160.0°180.0°
C3C5C7H1260.0°60.0°
C5C3N1C1177.7°85.0°
C5C3C4N2134.4°60.0°
H5C3C4O2159.1°120.0°
H5C3C5C681.0°60.0°
H5C3C5C734.7°180.0°
H5C3C5H6157.1°60.0°
H5C3N1C166.4°34.9°
H5C3C4N220.1°59.9°
O2C4N2C84.4°0.1°
O2C4N2H13175.6°180.0°
C6C5C7H6117.8°120.1°
C5C6H7H8120.0°119.9°
C5C6H7H9120.0°120.1°
C5C6H8H9120.0°120.0°
C6C5C7H1059.7°180.0°
C6C5C7H1160.3°60.1°
C6C5C7H12179.6°59.9°
C7C5C6H759.2°59.9°
C7C5C6H8179.2°60.0°
C7C5C6H960.8°180.0°
C5C7H10H11120.0°119.9°
C5C7H10H12120.0°120.1°
C5C7H11H12120.0°120.0°
H6C5C6H758.5°180.0°
H6C5C6H861.5°60.1°
H6C5C6H9178.6°59.9°
H6C5C7H1058.1°59.9°
H6C5C7H11178.1°60.0°
H6C5C7H1261.9°180.0°
H7C6H8H9120.0°120.1°
H10C7H11H12119.9°120.1°
C8N2H13C4180.0°179.9°
N2C8C9C10129.1°120.0°
N2C8C9H14115.2°120.0°
N2C8C10H14115.0°120.0°
N2C8C9O337.5°20.0°
N2C8C10C1172.2°65.0°
N2C8C10H1548.1°55.0°
N2C8C10H16167.5°175.1°
N2C8C9N6133.8°160.0°
H13N2C8C997.3°120.1°
H13N2C8C1033.0°119.9°
H13N2C8H14147.7°0.1°
C9C8C10H14115.7°120.0°
C8C9O3N6170.6°180.0°
C9C8C10C11158.5°175.0°
C9C8C10H1581.2°65.0°
C9C8C10H1638.2°55.1°
C8C9N6C14176.8°180.0°
C8C9N6H263.2°0.0°
C9C8N2C482.7°60.1°
C10C8C9O391.6°100.0°
C8C10C11H15120.3°120.0°
C8C10C11H16120.3°120.0°
C8C10H15H16119.0°120.1°
C8C10C11C12135.1°180.0°
C8C10C11H17104.7°60.0°
C8C10C11H1814.8°60.0°
C10C8N2C4147.0°59.9°
C10C8C9N697.1°80.0°
H14C8C9O3152.7°140.0°
H14C8C10C1142.8°55.0°
H14C8C10H15163.1°175.0°
H14C8C10H1677.5°64.9°
H14C8N2C432.3°180.0°
H14C8C9N618.6°40.0°
O3C9N6C1412.1°0.0°
O3C9N6H26167.9°180.0°
C11C10H15H16119.0°119.9°
C10C11C12H17120.2°120.0°
C10C11C12H18120.3°120.0°
C10C11H17H18119.3°120.0°
C10C11C12N3161.0°180.0°
C10C11C12H1977.9°60.0°
C10C11C12H2039.9°60.0°
H15C10C11C1214.7°60.0°
H15C10C11H17135.0°180.0°
H15C10C11H18105.6°60.0°
H16C10C11C12104.6°60.0°
H16C10C11H1715.6°60.0°
H16C10C11H18135.1°180.0°
C12C11H17H18119.2°120.0°
C11C12N3H19121.1°120.0°
C11C12N3H20121.1°120.0°
C11C12H19H20116.5°120.0°
C11C12N3C1334.8°180.0°
C11C12N3H21145.2°0.1°
H17C11C12N340.7°60.0°
H17C11C12H19161.8°180.0°
H17C11C12H2080.4°60.0°
H18C11C12N378.7°59.9°
H18C11C12H1942.4°60.0°
H18C11C12H20160.1°180.0°
N3C12H19H20116.5°120.0°
C12N3C13H21180.0°179.9°
C12N3C13N40.5°0.1°
C12N3C13N5179.6°180.0°
H19C12N3C13155.9°60.0°
H19C12N3H2124.0°120.0°
H20C12N3C1386.3°60.0°
H20C12N3H2193.7°120.0°
N3C13N4N5179.1°180.0°
N3C13N4H22179.1°0.1°
N3C13N4H230.9°180.0°
N3C13N5H24179.1°0.0°
N3C13N5H251.0°180.0°
H21N3C13N4179.5°180.0°
H21N3C13N50.4°0.0°
C13N4H22H23180.0°179.9°
N4C13N5H240.0°179.9°
N4C13N5H25180.0°0.0°
N5C13N4H220.0°179.9°
N5C13N4H23180.0°0.0°
C13N5H24H25179.9°180.0°
C14N6H26C9180.0°179.9°
N6C14C15C16124.7°120.0°
N6C14C15H27117.8°120.0°
N6C14C16H27124.9°120.0°
N6C14C15O414.2°0.0°
N6C14C16C1723.8°65.0°
N6C14C16H2897.7°55.0°
N6C14C16H29145.3°175.0°
N6C14C15N7167.2°180.0°
H26N6C14C1582.3°25.0°
H26N6C14C1636.4°95.0°
H26N6C14H27160.7°144.9°
C15C14C16H27117.6°120.0°
C14C15O4N7178.4°180.0°
C15C14C16C17141.4°175.0°
C15C14C16H2819.8°65.0°
C15C14C16H2997.2°55.0°
C14C15N7C19161.8°180.0°
C14C15N7H3518.2°0.1°
C15C14N6C997.7°155.0°
C16C14C15O4110.5°120.0°
C14C16C17H28121.5°120.0°
C14C16C17H29121.5°120.0°
C14C16H28H29115.1°120.0°
C14C16C17S1167.4°180.0°
C14C16C17H3072.1°60.0°
C14C16C17H3146.9°60.0°
C16C14N6C9143.6°85.0°
C16C14C15N768.2°60.0°
H27C14C15O4132.0°120.0°
H27C14C16C17101.1°55.0°
H27C14C16H28137.4°175.1°
H27C14C16H2920.4°65.0°
H27C14N6C919.3°35.0°
H27C14C15N749.4°60.0°
O4C15N7C1919.6°0.0°
O4C15N7H35160.4°179.9°
C17C16H28H29115.1°120.0°
C16C17S1H30120.5°120.0°
C16C17S1H31120.5°120.0°
C16C17H30H31118.4°120.0°
C16C17S1C1873.6°180.0°
H28C16C17S145.9°60.0°
H28C16C17H30166.4°180.0°
H28C16C17H3174.6°60.0°
H29C16C17S171.1°60.0°
H29C16C17H3049.4°60.1°
H29C16C17H31168.4°179.9°
S1C17H30H31118.5°120.0°
C17S1C18H32180.0°60.0°
C17S1C18H3360.0°60.0°
C17S1C18H3460.0°180.0°
H30C17S1C18165.9°60.0°
H31C17S1C1846.9°60.0°
S1C18H32H33120.0°120.0°
S1C18H32H34120.0°120.0°
S1C18H33H34120.0°120.0°
H32C18H33H34120.0°119.9°
O5C21C22C19129.0°120.0°
O5C21C22H40119.3°120.0°
O5C21C19H40112.2°120.0°
O5C21C22CL1174.3°65.0°
O5C21C19C2037.9°60.0°
O5C21C19N779.2°60.0°
O5C21C19H36163.6°180.0°
O5C21C22H4253.1°55.0°
O5C21C22H4364.4°175.0°
C22C21C19H40113.4°120.0°
C21C22CL1H42121.2°120.0°
C21C22CL1H43121.2°120.0°
C22C21C19C20172.3°180.0°
C22C21C19N755.1°60.0°
C22C21C19H3662.1°60.0°
C22C21O5H41180.0°59.9°
C21C22H42H43116.1°120.0°
C19C21C22CL156.7°175.0°
C21C19C20N7114.9°120.0°
C21C19C20H36126.0°120.0°
C21C19N7H36116.0°120.0°
C21C19N7H3524.3°24.9°
C21C19C20H37180.0°60.0°
C21C19C20H3860.0°60.0°
C21C19C20H3960.0°180.0°
C19C21O5H4151.3°60.0°
C19C21C22H42177.9°65.0°
C19C21C22H4364.6°55.0°
C21C19N7C15155.7°155.0°
CL1C22C21H4055.1°55.0°
CL1C22H42H43116.2°120.0°
C20C19N7H36117.3°120.0°
C20C19N7H35102.4°95.1°
C19C20H37H38120.0°120.0°
C19C20H37H39120.0°120.0°
C19C20H38H39120.0°120.0°
C20C19C21H4074.3°60.0°
C20C19N7C1577.6°85.0°
C19N7H35C15180.0°179.9°
N7C19C20H3765.1°60.0°
N7C19C20H3854.9°180.0°
N7C19C20H39174.9°60.0°
N7C19C21H40168.6°180.0°
H35N7C19H36140.3°144.9°
H36C19C20H3754.0°180.0°
H36C19C20H38173.9°60.0°
H36C19C20H3966.1°60.0°
H36C19C21H4051.4°59.9°
H36C19N7C1539.7°35.0°
H37C20H38H39120.0°120.0°
H40C21O5H4160.1°179.9°
H40C21C22H4266.2°175.0°
H40C21C22H43176.3°65.0°

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon