PRD_002087
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1 | O1 | doub | 0.00Å | 1.22Å | |
| C1 | O2 | sing | 0.00Å | 1.44Å | |
| O2 | C2 | sing | 0.00Å | 1.42Å | |
| C2 | C3 | sing | 0.00Å | 1.49Å | |
| C2 | H1 | sing | 0.00Å | 1.10Å | |
| C2 | H2 | sing | 0.00Å | 1.10Å | |
| C3 | C4 | doub | 0.00Å | 1.37Å | Aromatic |
| C3 | C8 | sing | 0.00Å | 1.38Å | Aromatic |
| C4 | C5 | sing | 0.00Å | 1.37Å | Aromatic |
| C4 | H3 | sing | 0.00Å | 1.08Å | |
| C5 | C6 | doub | 0.00Å | 1.39Å | Aromatic |
| C5 | H4 | sing | 0.00Å | 1.08Å | |
| C6 | C7 | sing | 0.00Å | 1.37Å | Aromatic |
| C6 | H5 | sing | 0.00Å | 1.08Å | |
| C7 | C8 | doub | 0.00Å | 1.37Å | Aromatic |
| C7 | H6 | sing | 0.00Å | 1.08Å | |
| C8 | H7 | sing | 0.00Å | 1.08Å | |
| N1 | C9 | sing | 0.00Å | 1.45Å | |
| N1 | H8 | sing | 0.00Å | 1.00Å | |
| C9 | C10 | sing | 0.00Å | 1.49Å | |
| C9 | C11 | sing | 0.00Å | 1.52Å | |
| C9 | H9 | sing | 0.00Å | 1.10Å | |
| C10 | O3 | doub | 0.00Å | 1.20Å | |
| C11 | H10 | sing | 0.00Å | 1.10Å | |
| C11 | H11 | sing | 0.00Å | 1.10Å | |
| C11 | H12 | sing | 0.00Å | 1.10Å | |
| N2 | C12 | sing | 0.00Å | 1.43Å | |
| N2 | H13 | sing | 0.00Å | 1.00Å | |
| C12 | C13 | sing | 0.00Å | 1.49Å | |
| C12 | C14 | sing | 0.00Å | 1.51Å | |
| C12 | H14 | sing | 0.00Å | 1.10Å | |
| C13 | O4 | doub | 0.00Å | 1.19Å | |
| C14 | H15 | sing | 0.00Å | 1.10Å | |
| C14 | H16 | sing | 0.00Å | 1.10Å | |
| C14 | H17 | sing | 0.00Å | 1.10Å | |
| N3 | N4 | sing | 0.00Å | 1.31Å | |
| C15 | O5 | doub | 0.00Å | 1.19Å | |
| C15 | N4 | sing | 0.00Å | 1.30Å | |
| C16 | C17 | sing | 0.00Å | 1.49Å | |
| C16 | N4 | sing | 0.00Å | 1.43Å | |
| C17 | O6 | doub | 0.00Å | 1.18Å | |
| C17 | N5 | sing | 0.00Å | 1.31Å | |
| N3 | H18 | sing | 0.00Å | 1.00Å | |
| C16 | H19 | sing | 0.00Å | 1.10Å | |
| C16 | H20 | sing | 0.00Å | 1.10Å | |
| N5 | H21 | sing | 0.00Å | 1.00Å | |
| N5 | H22 | sing | 0.00Å | 1.00Å | |
| C18 | H23 | sing | 0.00Å | 1.10Å | |
| C18 | H24 | sing | 0.00Å | 1.10Å | |
| C18 | H25 | sing | 0.00Å | 1.10Å | |
| C1 | N1 | sing | 0.00Å | 1.34Å | |
| C10 | N2 | sing | 0.00Å | 1.32Å | |
| C13 | N3 | sing | 0.00Å | 1.34Å | |
| C15 | C18 | sing | 0.00Å | 1.49Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1 | C1 | O2 | 117.3° | 90.0° |
| O1 | C1 | N1 | 126.5° | 90.0° |
| C1 | O2 | C2 | 116.3° | 90.0° |
| O2 | C1 | N1 | 116.2° | 90.0° |
| O2 | C2 | C3 | 108.4° | 90.0° |
| O2 | C2 | H1 | 109.8° | 90.0° |
| O2 | C2 | H2 | 109.7° | 90.0° |
| C3 | C2 | H1 | 109.7° | 90.0° |
| C3 | C2 | H2 | 109.7° | 90.0° |
| C2 | C3 | C4 | 118.5° | 90.0° |
| C2 | C3 | C8 | 119.2° | 90.0° |
| H1 | C2 | H2 | 109.5° | 90.0° |
| C4 | C3 | C8 | 122.2° | 90.0° |
| C3 | C4 | C5 | 117.1° | 90.0° |
| C3 | C4 | H3 | 121.4° | 90.0° |
| C3 | C8 | C7 | 120.5° | 90.0° |
| C3 | C8 | H7 | 119.7° | 90.0° |
| C5 | C4 | H3 | 121.4° | 90.0° |
| C4 | C5 | C6 | 121.1° | 90.0° |
| C4 | C5 | H4 | 119.4° | 90.0° |
| C6 | C5 | H4 | 119.4° | 90.0° |
| C5 | C6 | C7 | 121.3° | 90.0° |
| C5 | C6 | H5 | 119.4° | 90.0° |
| C7 | C6 | H5 | 119.3° | 90.0° |
| C6 | C7 | C8 | 117.6° | 90.0° |
| C6 | C7 | H6 | 121.2° | 90.0° |
| C8 | C7 | H6 | 121.2° | 90.0° |
| C7 | C8 | H7 | 119.8° | 90.0° |
| C9 | N1 | H8 | 117.8° | 90.0° |
| N1 | C9 | C10 | 116.6° | 90.0° |
| N1 | C9 | C11 | 114.0° | 90.0° |
| N1 | C9 | H9 | 103.5° | 90.0° |
| C9 | N1 | C1 | 124.4° | 90.0° |
| H8 | N1 | C1 | 117.8° | 90.0° |
| C10 | C9 | C11 | 114.4° | 90.0° |
| C10 | C9 | H9 | 103.1° | 90.0° |
| C9 | C10 | O3 | 121.1° | 90.0° |
| C9 | C10 | N2 | 114.4° | 90.0° |
| C11 | C9 | H9 | 102.9° | 90.0° |
| C9 | C11 | H10 | 109.5° | 90.0° |
| C9 | C11 | H11 | 109.5° | 90.0° |
| C9 | C11 | H12 | 109.5° | 90.0° |
| O3 | C10 | N2 | 124.5° | 90.0° |
| H10 | C11 | H11 | 109.5° | 90.0° |
| H10 | C11 | H12 | 109.5° | 90.0° |
| H11 | C11 | H12 | 109.4° | 90.0° |
| C12 | N2 | H13 | 117.4° | 90.0° |
| N2 | C12 | C13 | 113.6° | 90.0° |
| N2 | C12 | C14 | 108.7° | 90.0° |
| N2 | C12 | H14 | 108.8° | 90.0° |
| C12 | N2 | C10 | 125.2° | 90.0° |
| H13 | N2 | C10 | 117.4° | 90.0° |
| C13 | C12 | C14 | 109.9° | 90.0° |
| C13 | C12 | H14 | 107.9° | 90.0° |
| C12 | C13 | O4 | 118.9° | 90.0° |
| C12 | C13 | N3 | 114.2° | 90.0° |
| C14 | C12 | H14 | 107.7° | 90.0° |
| C12 | C14 | H15 | 109.5° | 90.0° |
| C12 | C14 | H16 | 109.5° | 90.0° |
| C12 | C14 | H17 | 109.5° | 90.0° |
| O4 | C13 | N3 | 126.9° | 90.0° |
| H15 | C14 | H16 | 109.4° | 90.0° |
| H15 | C14 | H17 | 109.5° | 90.0° |
| H16 | C14 | H17 | 109.5° | 90.0° |
| N3 | N4 | C15 | 121.6° | 90.0° |
| N3 | N4 | C16 | 118.8° | 90.0° |
| N4 | N3 | H18 | 113.8° | 90.0° |
| N4 | N3 | C13 | 132.5° | 90.0° |
| O5 | C15 | N4 | 119.5° | 90.0° |
| O5 | C15 | C18 | 119.1° | 90.0° |
| C15 | N4 | C16 | 119.5° | 90.0° |
| N4 | C15 | C18 | 121.4° | 90.0° |
| C17 | C16 | N4 | 116.6° | 90.0° |
| C16 | C17 | O6 | 119.4° | 90.0° |
| C16 | C17 | N5 | 119.7° | 90.0° |
| C17 | C16 | H19 | 107.7° | 90.0° |
| C17 | C16 | H20 | 107.7° | 90.0° |
| N4 | C16 | H19 | 107.7° | 90.0° |
| N4 | C16 | H20 | 107.7° | 90.0° |
| O6 | C17 | N5 | 120.8° | 90.0° |
| C17 | N5 | H21 | 120.0° | 90.0° |
| C17 | N5 | H22 | 120.0° | 90.0° |
| H18 | N3 | C13 | 113.7° | 90.0° |
| H19 | C16 | H20 | 109.4° | 90.0° |
| H21 | N5 | H22 | 120.0° | 90.0° |
| H23 | C18 | H24 | 109.5° | 90.0° |
| H23 | C18 | H25 | 109.5° | 90.0° |
| H23 | C18 | C15 | 109.5° | 90.0° |
| H24 | C18 | H25 | 109.5° | 90.0° |
| H24 | C18 | C15 | 109.5° | 90.0° |
| H25 | C18 | C15 | 109.4° | 90.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1 | C1 | O2 | N1 | 178.4° | 90.0° |
| O1 | C1 | O2 | C2 | 75.8° | 90.0° |
| O1 | C1 | N1 | C9 | 21.7° | 90.0° |
| O1 | C1 | N1 | H8 | 158.3° | 90.0° |
| C1 | O2 | C2 | C3 | 160.9° | 90.0° |
| C1 | O2 | C2 | H1 | 79.2° | 90.0° |
| C1 | O2 | C2 | H2 | 41.1° | 90.0° |
| O2 | C1 | N1 | C9 | 156.5° | 90.0° |
| O2 | C1 | N1 | H8 | 23.5° | 90.0° |
| O2 | C2 | C3 | H1 | 119.8° | 90.0° |
| O2 | C2 | C3 | H2 | 119.8° | 90.0° |
| O2 | C2 | H1 | H2 | 120.5° | 90.0° |
| O2 | C2 | C3 | C4 | 137.1° | 90.0° |
| O2 | C2 | C3 | C8 | 42.5° | 90.0° |
| C2 | O2 | C1 | N1 | 102.6° | 90.0° |
| C3 | C2 | H1 | H2 | 120.5° | 90.0° |
| C2 | C3 | C4 | C8 | 179.6° | 90.0° |
| C2 | C3 | C4 | C5 | 179.7° | 90.0° |
| C2 | C3 | C4 | H3 | 0.2° | 90.0° |
| C2 | C3 | C8 | C7 | 179.9° | 90.0° |
| C2 | C3 | C8 | H7 | 0.1° | 90.0° |
| H1 | C2 | C3 | C4 | 17.3° | 90.0° |
| H1 | C2 | C3 | C8 | 162.4° | 90.0° |
| H2 | C2 | C3 | C4 | 103.1° | 90.0° |
| H2 | C2 | C3 | C8 | 77.3° | 90.0° |
| C3 | C4 | C5 | H3 | 180.0° | 90.0° |
| C3 | C4 | C5 | C6 | 0.3° | 90.0° |
| C3 | C4 | C5 | H4 | 179.7° | 90.0° |
| C4 | C3 | C8 | C7 | 0.5° | 90.0° |
| C4 | C3 | C8 | H7 | 179.6° | 90.0° |
| C8 | C3 | C4 | C5 | 0.1° | 90.0° |
| C8 | C3 | C4 | H3 | 179.9° | 90.0° |
| C3 | C8 | C7 | C6 | 0.3° | 90.0° |
| C3 | C8 | C7 | H7 | 180.0° | 90.0° |
| C3 | C8 | C7 | H6 | 179.7° | 90.0° |
| C4 | C5 | C6 | H4 | 180.0° | 90.0° |
| C4 | C5 | C6 | C7 | 0.4° | 90.0° |
| C4 | C5 | C6 | H5 | 179.6° | 90.0° |
| H3 | C4 | C5 | C6 | 179.7° | 90.0° |
| H3 | C4 | C5 | H4 | 0.3° | 90.0° |
| C5 | C6 | C7 | H5 | 180.0° | 90.0° |
| C5 | C6 | C7 | C8 | 0.1° | 90.0° |
| C5 | C6 | C7 | H6 | 179.9° | 90.0° |
| H4 | C5 | C6 | C7 | 179.6° | 90.0° |
| H4 | C5 | C6 | H5 | 0.4° | 90.0° |
| C6 | C7 | C8 | H6 | 180.0° | 90.0° |
| C6 | C7 | C8 | H7 | 179.7° | 90.0° |
| H5 | C6 | C7 | C8 | 179.9° | 90.0° |
| H5 | C6 | C7 | H6 | 0.1° | 90.0° |
| H6 | C7 | C8 | H7 | 0.3° | 90.0° |
| C9 | N1 | H8 | C1 | 180.0° | 90.0° |
| N1 | C9 | C10 | C11 | 136.5° | 90.0° |
| N1 | C9 | C10 | H9 | 112.6° | 90.0° |
| N1 | C9 | C11 | H9 | 111.3° | 90.0° |
| N1 | C9 | C10 | O3 | 36.4° | 90.0° |
| N1 | C9 | C11 | H10 | 180.0° | 90.0° |
| N1 | C9 | C11 | H11 | 60.0° | 90.0° |
| N1 | C9 | C11 | H12 | 60.0° | 90.0° |
| N1 | C9 | C10 | N2 | 143.9° | 90.0° |
| H8 | N1 | C9 | C10 | 101.3° | 90.0° |
| H8 | N1 | C9 | C11 | 35.4° | 90.0° |
| H8 | N1 | C9 | H9 | 146.3° | 90.0° |
| C10 | C9 | C11 | H9 | 111.0° | 90.0° |
| C9 | C10 | O3 | N2 | 179.7° | 90.0° |
| C10 | C9 | C11 | H10 | 42.4° | 90.0° |
| C10 | C9 | C11 | H11 | 162.4° | 90.0° |
| C10 | C9 | C11 | H12 | 77.7° | 90.0° |
| C9 | C10 | N2 | C12 | 168.9° | 90.0° |
| C9 | C10 | N2 | H13 | 11.1° | 90.0° |
| C10 | C9 | N1 | C1 | 78.7° | 90.0° |
| C11 | C9 | C10 | O3 | 100.1° | 90.0° |
| C9 | C11 | H10 | H11 | 120.0° | 90.0° |
| C9 | C11 | H10 | H12 | 120.0° | 90.0° |
| C9 | C11 | H11 | H12 | 119.9° | 90.0° |
| C11 | C9 | N1 | C1 | 144.6° | 90.0° |
| C11 | C9 | C10 | N2 | 79.6° | 90.0° |
| H9 | C9 | C10 | O3 | 149.0° | 90.0° |
| H9 | C9 | C11 | H10 | 68.7° | 90.0° |
| H9 | C9 | C11 | H11 | 51.4° | 90.0° |
| H9 | C9 | C11 | H12 | 171.3° | 90.0° |
| H9 | C9 | N1 | C1 | 33.7° | 90.0° |
| H9 | C9 | C10 | N2 | 31.3° | 90.0° |
| O3 | C10 | N2 | C12 | 11.3° | 90.0° |
| O3 | C10 | N2 | H13 | 168.7° | 90.0° |
| H10 | C11 | H11 | H12 | 120.0° | 90.0° |
| C12 | N2 | H13 | C10 | 180.0° | 90.0° |
| N2 | C12 | C13 | C14 | 122.1° | 90.0° |
| N2 | C12 | C13 | H14 | 120.7° | 90.0° |
| N2 | C12 | C14 | H14 | 117.7° | 90.0° |
| N2 | C12 | C13 | O4 | 30.8° | 90.0° |
| N2 | C12 | C14 | H15 | 180.0° | 90.0° |
| N2 | C12 | C14 | H16 | 60.0° | 90.0° |
| N2 | C12 | C14 | H17 | 60.0° | 90.0° |
| N2 | C12 | C13 | N3 | 148.6° | 90.0° |
| H13 | N2 | C12 | C13 | 72.2° | 90.0° |
| H13 | N2 | C12 | C14 | 50.5° | 90.0° |
| H13 | N2 | C12 | H14 | 167.5° | 90.0° |
| C13 | C12 | C14 | H14 | 117.4° | 90.0° |
| C12 | C13 | O4 | N3 | 179.3° | 90.0° |
| C13 | C12 | C14 | H15 | 55.1° | 90.0° |
| C13 | C12 | C14 | H16 | 175.0° | 90.0° |
| C13 | C12 | C14 | H17 | 65.0° | 90.0° |
| C12 | C13 | N3 | N4 | 174.0° | 90.0° |
| C12 | C13 | N3 | H18 | 6.0° | 90.0° |
| C13 | C12 | N2 | C10 | 107.8° | 90.0° |
| C14 | C12 | C13 | O4 | 91.3° | 90.0° |
| C12 | C14 | H15 | H16 | 120.0° | 90.0° |
| C12 | C14 | H15 | H17 | 120.0° | 90.0° |
| C12 | C14 | H16 | H17 | 120.0° | 90.0° |
| C14 | C12 | N2 | C10 | 129.5° | 90.0° |
| C14 | C12 | C13 | N3 | 89.3° | 90.0° |
| H14 | C12 | C13 | O4 | 151.5° | 90.0° |
| H14 | C12 | C14 | H15 | 62.3° | 90.0° |
| H14 | C12 | C14 | H16 | 57.7° | 90.0° |
| H14 | C12 | C14 | H17 | 177.7° | 90.0° |
| H14 | C12 | N2 | C10 | 12.5° | 90.0° |
| H14 | C12 | C13 | N3 | 27.9° | 90.0° |
| O4 | C13 | N3 | N4 | 6.6° | 90.0° |
| O4 | C13 | N3 | H18 | 173.4° | 90.0° |
| H15 | C14 | H16 | H17 | 120.0° | 90.0° |
| N3 | N4 | C15 | O5 | 168.3° | 90.0° |
| N3 | N4 | C15 | C16 | 176.1° | 90.0° |
| N3 | N4 | C16 | C17 | 9.3° | 90.0° |
| N4 | N3 | H18 | C13 | 180.0° | 90.0° |
| N3 | N4 | C16 | H19 | 130.3° | 90.0° |
| N3 | N4 | C16 | H20 | 111.8° | 90.0° |
| N3 | N4 | C15 | C18 | 13.0° | 90.0° |
| O5 | C15 | N4 | C18 | 178.7° | 90.0° |
| O5 | C15 | N4 | C16 | 15.5° | 90.0° |
| O5 | C15 | C18 | H23 | 0.0° | 90.0° |
| O5 | C15 | C18 | H24 | 120.0° | 90.0° |
| O5 | C15 | C18 | H25 | 120.0° | 90.0° |
| C15 | N4 | C16 | C17 | 174.5° | 90.0° |
| C15 | N4 | N3 | H18 | 106.7° | 90.0° |
| C15 | N4 | C16 | H19 | 53.5° | 90.0° |
| C15 | N4 | C16 | H20 | 64.5° | 90.0° |
| N4 | C15 | C18 | H23 | 178.7° | 90.0° |
| N4 | C15 | C18 | H24 | 58.7° | 90.0° |
| N4 | C15 | C18 | H25 | 61.3° | 90.0° |
| C15 | N4 | N3 | C13 | 73.3° | 90.0° |
| C17 | C16 | N4 | H19 | 121.0° | 90.0° |
| C17 | C16 | N4 | H20 | 121.0° | 90.0° |
| C16 | C17 | O6 | N5 | 177.5° | 90.0° |
| C17 | C16 | H19 | H20 | 116.8° | 90.0° |
| C16 | C17 | N5 | H21 | 177.5° | 90.0° |
| C16 | C17 | N5 | H22 | 2.5° | 90.0° |
| N4 | C16 | C17 | O6 | 85.9° | 90.0° |
| N4 | C16 | C17 | N5 | 96.5° | 90.0° |
| C16 | N4 | N3 | H18 | 69.4° | 90.0° |
| N4 | C16 | H19 | H20 | 116.8° | 90.0° |
| C16 | N4 | N3 | C13 | 110.6° | 90.0° |
| C16 | N4 | C15 | C18 | 163.2° | 90.0° |
| O6 | C17 | C16 | H19 | 35.1° | 90.0° |
| O6 | C17 | C16 | H20 | 153.0° | 90.0° |
| O6 | C17 | N5 | H21 | 0.0° | 90.0° |
| O6 | C17 | N5 | H22 | 180.0° | 90.0° |
| N5 | C17 | C16 | H19 | 142.4° | 90.0° |
| N5 | C17 | C16 | H20 | 24.5° | 90.0° |
| C17 | N5 | H21 | H22 | 180.0° | 90.0° |
| H23 | C18 | H24 | H25 | 120.0° | 90.0° |
| H23 | C18 | H24 | C15 | 120.0° | 90.0° |
| H23 | C18 | H25 | C15 | 120.0° | 90.0° |
| H24 | C18 | H25 | C15 | 120.0° | 90.0° |






