Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_001238

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.53Å1.53Å
C1C5sing1.51Å1.52Å
C1H1sing1.09Å1.10Å
C1H2sing1.09Å1.10Å
C2C3sing1.53Å1.51Å
C2C4sing1.53Å1.52Å
C2H3sing1.09Å1.10Å
C3H4sing1.09Å1.10Å
C3H5sing1.09Å1.10Å
C3H6sing1.09Å1.10Å
C4H7sing1.09Å1.10Å
C4H8sing1.09Å1.10Å
C4H9sing1.09Å1.10Å
C5O1doub1.21Å1.27Å
N1C6sing1.47Å1.46Å
N1H10sing0.97Å1.00Å
C6C7sing1.51Å1.52Å
C6C8sing1.53Å1.57Å
C6H11sing1.09Å1.10Å
C7O2doub1.21Å1.25Å
C8C9sing1.53Å1.53Å
C8C10sing1.53Å1.52Å
C8H12sing1.09Å1.10Å
C9H13sing1.09Å1.10Å
C9H14sing1.09Å1.10Å
C9H15sing1.09Å1.10Å
C10H16sing1.09Å1.10Å
C10H17sing1.09Å1.10Å
C10H18sing1.09Å1.10Å
N2C11sing1.46Å1.50Å
N2H19sing0.97Å1.00Å
C11C12sing1.51Å1.55Å
C11C13sing1.53Å1.51Å
C11H20sing1.09Å1.10Å
C12O3doub1.21Å1.25Å
C13C14sing1.53Å1.55Å
C13C15sing1.53Å1.51Å
C13H21sing1.09Å1.10Å
C14H22sing1.09Å1.10Å
C14H23sing1.09Å1.10Å
C14H24sing1.09Å1.10Å
C15H25sing1.09Å1.10Å
C15H26sing1.09Å1.10Å
C15H27sing1.09Å1.10Å
C19C18sing1.53Å1.52Å
C18C17sing1.53Å1.52Å
C18C20sing1.53Å1.54Å
C17C16sing1.53Å1.54Å
O4C21sing1.43Å1.30Å
C16N3sing1.47Å1.48Å
C16C21sing1.53Å1.54Å
C21C22sing1.53Å1.53Å
C22C23sing1.51Å1.52Å
C23O6sing1.34Å1.35Å
C23O5doub1.21Å1.27Å
O6C24sing1.45Å1.49Å
C24C25sing1.53Å1.52Å
N3H28sing0.97Å1.00Å
C16H29sing1.09Å1.10Å
C17H30sing1.09Å1.10Å
C17H31sing1.09Å1.10Å
C18H32sing1.09Å1.10Å
C19H33sing1.09Å1.10Å
C19H34sing1.09Å1.10Å
C19H35sing1.09Å1.10Å
C20H36sing1.09Å1.10Å
C20H37sing1.09Å1.10Å
C20H38sing1.09Å1.10Å
C21H39sing1.09Å1.10Å
O4H40sing0.97Å0.95Å
C22H41sing1.09Å1.10Å
C22H42sing1.09Å1.10Å
C24H43sing1.09Å1.10Å
C24H44sing1.09Å1.10Å
C25H45sing1.09Å1.10Å
C25H46sing1.09Å1.10Å
C25H47sing1.09Å1.10Å
N1C5sing1.35Å1.31Å
N2C7sing1.35Å1.31Å
N3C12sing1.35Å1.32Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C5116.1°109.4°
C2C1H1107.8°109.5°
C2C1H2107.8°109.5°
C1C2C3113.3°109.5°
C1C2C4112.9°109.4°
C1C2H3105.7°109.5°
C5C1H1107.8°109.5°
C5C1H2107.8°109.4°
C1C5O1118.5°120.0°
C1C5N1119.0°120.0°
H1C1H2109.5°109.5°
C3C2C4112.4°109.5°
C3C2H3105.9°109.5°
C2C3H4109.5°109.5°
C2C3H5109.5°109.5°
C2C3H6109.5°109.5°
C4C2H3105.9°109.4°
C2C4H7109.5°109.5°
C2C4H8109.5°109.4°
C2C4H9109.5°109.5°
H4C3H5109.5°109.5°
H4C3H6109.5°109.4°
H5C3H6109.5°109.5°
H7C4H8109.5°109.5°
H7C4H9109.4°109.5°
H8C4H9109.5°109.5°
O1C5N1122.6°120.0°
C6N1H10117.9°120.0°
N1C6C7114.1°109.5°
N1C6C8105.7°109.4°
N1C6H11110.5°109.5°
C6N1C5124.2°120.0°
H10N1C5117.9°120.0°
C7C6C8107.8°109.5°
C7C6H11109.6°109.5°
C6C7O2116.4°120.0°
C6C7N2116.8°120.0°
C8C6H11108.9°109.5°
C6C8C9112.6°109.5°
C6C8C10115.0°109.5°
C6C8H12107.3°109.4°
O2C7N2126.7°120.0°
C9C8C10106.1°109.5°
C9C8H12107.7°109.5°
C8C9H13109.5°109.5°
C8C9H14109.5°109.5°
C8C9H15109.5°109.5°
C10C8H12107.8°109.4°
C8C10H16109.5°109.4°
C8C10H17109.4°109.5°
C8C10H18109.5°109.4°
H13C9H14109.5°109.4°
H13C9H15109.4°109.5°
H14C9H15109.5°109.5°
H16C10H17109.5°109.5°
H16C10H18109.5°109.5°
H17C10H18109.5°109.5°
C11N2H19120.3°120.0°
N2C11C12105.6°109.5°
N2C11C13112.1°109.5°
N2C11H20108.7°109.5°
C11N2C7119.5°120.0°
H19N2C7120.2°120.0°
C12C11C13113.8°109.4°
C12C11H20108.0°109.5°
C11C12O3114.5°120.0°
C11C12N3118.5°120.0°
C13C11H20108.5°109.4°
C11C13C14114.5°109.5°
C11C13C15111.3°109.4°
C11C13H21107.7°109.5°
O3C12N3127.0°120.0°
C14C13C15107.9°109.5°
C14C13H21107.4°109.5°
C13C14H22109.5°109.5°
C13C14H23109.5°109.5°
C13C14H24109.5°109.4°
C15C13H21107.8°109.5°
C13C15H25109.5°109.5°
C13C15H26109.5°109.5°
C13C15H27109.5°109.5°
H22C14H23109.5°109.5°
H22C14H24109.4°109.5°
H23C14H24109.5°109.5°
H25C15H26109.4°109.5°
H25C15H27109.5°109.5°
H26C15H27109.4°109.5°
C19C18C17110.7°109.5°
C19C18C20111.0°109.5°
C19C18H32107.9°109.5°
C18C19H33109.5°109.5°
C18C19H34109.5°109.4°
C18C19H35109.5°109.5°
C17C18C20111.5°109.5°
C18C17C16114.3°109.5°
C18C17H30108.3°109.5°
C18C17H31108.2°109.5°
C17C18H32107.8°109.5°
C20C18H32107.7°109.5°
C18C20H36109.5°109.5°
C18C20H37109.5°109.5°
C18C20H38109.5°109.4°
C17C16N3109.7°109.5°
C17C16C21112.7°109.5°
C17C16H29108.4°109.5°
C16C17H30108.3°109.4°
C16C17H31108.3°109.5°
O4C21C16116.8°109.5°
O4C21C22109.9°109.5°
O4C21H39112.0°109.5°
C21O4H40109.5°114.0°
N3C16C21108.5°109.5°
C16N3H28119.0°120.0°
N3C16H29109.2°109.5°
C16N3C12122.1°120.0°
C16C21C22100.4°109.5°
C21C16H29108.4°109.5°
C16C21H39108.4°109.5°
C21C22C23105.5°109.5°
C22C21H39108.5°109.4°
C21C22H41110.4°109.4°
C21C22H42110.5°109.5°
C22C23O6104.7°120.0°
C22C23O5114.5°120.0°
C23C22H41110.5°109.5°
C23C22H42110.4°109.5°
O6C23O5127.3°120.0°
C23O6C24118.4°117.0°
O6C24C25110.3°109.5°
O6C24H43109.3°109.5°
O6C24H44109.3°109.5°
C25C24H43109.2°109.5°
C25C24H44109.3°109.5°
C24C25H45109.5°109.4°
C24C25H46109.4°109.5°
C24C25H47109.5°109.4°
H28N3C12118.9°120.1°
H30C17H31109.5°109.4°
H33C19H34109.5°109.4°
H33C19H35109.5°109.5°
H34C19H35109.5°109.5°
H36C20H37109.5°109.5°
H36C20H38109.5°109.5°
H37C20H38109.5°109.4°
H41C22H42109.5°109.4°
H43C24H44109.5°109.5°
H45C25H46109.5°109.5°
H45C25H47109.5°109.4°
H46C25H47109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C5H1120.9°120.0°
C2C1C5H2120.9°120.0°
C2C1H1H2117.0°120.1°
C1C2C3C4129.5°120.0°
C1C2C3H3115.4°120.0°
C1C2C4H3115.2°120.0°
C1C2C3H4180.0°180.0°
C1C2C3H560.0°60.1°
C1C2C3H660.0°60.0°
C1C2C4H7180.0°60.0°
C1C2C4H860.0°180.0°
C1C2C4H960.0°60.0°
C2C1C5O160.8°0.0°
C2C1C5N1119.4°180.0°
C5C1H1H2117.0°120.0°
C5C1C2C3133.5°65.0°
C5C1C2C44.3°175.0°
C5C1C2H3111.0°55.1°
C1C5O1N1179.8°180.0°
C1C5N1C6174.3°180.0°
C1C5N1H105.7°0.1°
H1C1C2C312.5°175.0°
H1C1C2C4116.7°55.0°
H1C1C2H3128.0°64.9°
H1C1C5O160.2°120.0°
H1C1C5N1119.6°60.0°
H2C1C2C3105.6°54.9°
H2C1C2C4125.2°65.0°
H2C1C2H39.9°175.0°
H2C1C5O1178.3°120.0°
H2C1C5N11.5°60.0°
C3C2C4H3115.1°120.0°
C2C3H4H5120.0°120.0°
C2C3H4H6120.0°120.0°
C2C3H5H6120.0°120.0°
C3C2C4H750.3°180.0°
C3C2C4H869.7°60.0°
C3C2C4H9170.3°60.0°
C4C2C3H450.5°60.0°
C4C2C3H5170.5°180.0°
C4C2C3H669.5°59.9°
C2C4H7H8120.0°120.0°
C2C4H7H9120.0°120.0°
C2C4H8H9120.0°120.0°
H3C2C3H464.7°60.0°
H3C2C3H555.4°60.0°
H3C2C3H6175.4°179.9°
H3C2C4H764.8°60.0°
H3C2C4H8175.2°60.1°
H3C2C4H955.2°180.0°
H4C3H5H6120.0°120.0°
H7C4H8H9120.0°120.0°
O1C5N1C65.5°0.0°
O1C5N1H10174.5°180.0°
C6N1H10C5180.0°180.0°
N1C6C7C8117.1°120.0°
N1C6C7H11124.5°120.0°
N1C6C8H11118.7°120.0°
N1C6C7O219.9°19.2°
N1C6C8C969.0°64.4°
N1C6C8C1052.7°55.7°
N1C6C8H12172.6°175.6°
N1C6C7N2162.7°160.8°
H10N1C6C764.2°25.0°
H10N1C6C854.2°95.0°
H10N1C6H11171.9°145.1°
C7C6C8H11118.8°120.0°
C6C7O2N2177.1°179.9°
C7C6C8C9168.5°175.6°
C7C6C8C1069.7°64.4°
C7C6C8H1250.1°55.6°
C6C7N2C11174.7°175.2°
C6C7N2H195.3°4.7°
C7C6N1C5115.8°155.0°
C8C6C7O297.2°100.8°
C6C8C9C10126.7°120.1°
C6C8C9H12118.1°120.0°
C6C8C10H12119.6°119.9°
C6C8C9H13180.0°66.1°
C6C8C9H1460.0°174.0°
C6C8C9H1560.0°53.9°
C6C8C10H16180.0°59.9°
C6C8C10H1760.0°180.0°
C6C8C10H1860.0°60.0°
C8C6N1C5125.8°85.0°
C8C6C7N280.2°79.2°
H11C6C7O2144.4°139.2°
H11C6C8C949.7°55.5°
H11C6C8C10171.5°175.6°
H11C6C8H1268.7°64.4°
H11C6N1C58.1°35.0°
H11C6C7N238.3°40.8°
O2C7N2C112.3°4.8°
O2C7N2H19177.7°175.2°
C9C8C10H12115.2°120.0°
C8C9H13H14120.0°120.0°
C8C9H13H15120.0°120.0°
C8C9H14H15120.0°120.0°
C9C8C10H1654.8°180.0°
C9C8C10H1765.3°60.0°
C9C8C10H18174.8°60.0°
C10C8C9H1353.3°54.0°
C10C8C9H14173.3°66.0°
C10C8C9H1566.7°174.0°
C8C10H16H17120.0°120.0°
C8C10H16H18120.0°119.9°
C8C10H17H18120.0°120.0°
H12C8C9H1361.9°174.0°
H12C8C9H1458.1°54.0°
H12C8C9H15178.1°66.0°
H12C8C10H1660.4°60.0°
H12C8C10H17179.6°60.0°
H12C8C10H1859.6°180.0°
H13C9H14H15119.9°120.0°
H16C10H17H18120.0°120.1°
C11N2H19C7180.0°179.9°
N2C11C12C13123.4°120.1°
N2C11C12H20116.1°120.0°
N2C11C13H20120.0°120.0°
N2C11C12O383.1°18.6°
N2C11C13C14172.7°61.7°
N2C11C13C1550.1°58.3°
N2C11C13H2167.9°178.3°
N2C11C12N396.7°161.3°
H19N2C11C1249.6°25.0°
H19N2C11C1374.8°95.0°
H19N2C11H20165.3°145.0°
C12C11C13H20120.3°119.9°
C11C12O3N3179.7°179.9°
C12C11C13C1467.5°178.3°
C12C11C13C15169.8°61.8°
C12C11C13H2151.9°58.2°
C11C12N3C16178.9°175.9°
C11C12N3H281.1°4.2°
C12C11N2C7130.4°155.1°
C13C11C12O340.3°101.5°
C11C13C14C15124.5°119.9°
C11C13C14H21119.5°120.1°
C11C13C15H21117.9°120.0°
C11C13C14H22180.0°60.0°
C11C13C14H2360.0°179.9°
C11C13C14H2460.0°60.0°
C11C13C15H25180.0°55.3°
C11C13C15H2660.0°64.8°
C11C13C15H2760.0°175.3°
C13C11N2C7105.2°84.9°
C13C11C12N3139.9°78.6°
H20C11C12O3160.8°138.6°
H20C11C13C1452.8°58.4°
H20C11C13C1569.9°178.3°
H20C11C13H21172.1°61.7°
H20C11N2C714.7°35.0°
H20C11C12N319.5°41.3°
O3C12N3C160.8°4.0°
O3C12N3H28179.2°175.9°
C14C13C15H21115.7°120.0°
C13C14H22H23120.0°120.0°
C13C14H22H24120.0°120.0°
C13C14H23H24120.0°120.0°
C14C13C15H2553.6°64.7°
C14C13C15H2666.4°175.3°
C14C13C15H27173.6°55.3°
C15C13C14H2255.5°60.0°
C15C13C14H23175.6°60.0°
C15C13C14H2464.5°180.0°
C13C15H25H26120.0°120.0°
C13C15H25H27120.0°120.0°
C13C15H26H27120.0°120.0°
H21C13C14H2260.5°180.0°
H21C13C14H2359.6°60.0°
H21C13C14H24179.6°60.1°
H21C13C15H2562.1°175.3°
H21C13C15H26177.9°55.3°
H21C13C15H2758.0°64.7°
H22C14H23H24120.0°120.0°
H25C15H26H27120.0°120.0°
C19C18C17C20124.2°120.0°
C19C18C17H32117.8°120.0°
C19C18C20H32117.9°120.0°
C19C18C17C16171.5°175.0°
C19C18C17H3067.8°55.0°
C19C18C17H3150.7°64.9°
C18C19H33H34120.0°119.9°
C18C19H33H35120.0°120.1°
C18C19H34H35120.0°120.0°
C19C18C20H36180.0°180.0°
C19C18C20H3760.0°60.0°
C19C18C20H3860.0°60.0°
C17C18C20H32118.1°120.0°
C18C17C16H30120.7°120.0°
C18C17C16H31120.7°120.1°
C18C17C16N355.0°65.0°
C18C17C16C21175.9°175.0°
C18C17C16H2964.2°55.0°
C18C17H30H31117.8°120.0°
C17C18C19H33180.0°60.0°
C17C18C19H3460.0°180.0°
C17C18C19H3560.0°60.1°
C17C18C20H3656.0°60.0°
C17C18C20H37176.0°180.0°
C17C18C20H3864.0°60.0°
C20C18C17C1664.4°65.0°
C20C18C17H3056.3°175.0°
C20C18C17H31174.9°55.1°
C20C18C19H3355.6°60.0°
C20C18C19H34175.5°60.0°
C20C18C19H3564.5°179.9°
C18C20H36H37120.0°120.0°
C18C20H36H38120.0°120.0°
C18C20H37H38120.0°120.0°
C17C16C21O455.2°60.0°
C17C16N3C21123.5°120.0°
C17C16N3H29118.6°120.0°
C17C16C21H29119.9°120.0°
C17C16C21C22173.9°180.0°
C17C16N3H2859.0°95.0°
C16C17H30H31117.8°120.0°
C16C17C18H3253.7°55.0°
C17C16C21H3972.4°60.0°
C17C16N3C12121.0°85.0°
O4C21C16N366.5°60.0°
O4C21C16C22118.7°120.0°
O4C21C16H39127.6°120.0°
O4C21C22H39122.8°120.0°
O4C21C22C23118.0°65.0°
O4C21C16H29175.1°180.0°
O4C21C22H411.4°55.0°
O4C21C22H42122.7°175.0°
N3C16C21H29118.4°120.0°
N3C16C21C2252.3°60.0°
C16N3H28C12180.0°180.0°
N3C16C17H30175.7°55.0°
N3C16C17H3165.8°175.0°
N3C16C21H39166.0°180.0°
C16C21C22H39113.6°120.0°
C16C21C22C23118.4°175.0°
C21C16N3H2864.5°25.0°
C21C16C17H3063.4°65.0°
C21C16C17H3155.2°54.9°
C16C21O4H40180.0°60.0°
C16C21C22H41122.2°65.0°
C16C21C22H421.0°55.0°
C21C16N3C12115.5°155.0°
C21C22C23H41119.4°120.0°
C21C22C23H42119.4°120.1°
C21C22C23O6109.9°180.0°
C21C22C23O5106.1°0.0°
C22C21C16H2966.2°60.0°
C22C21O4H4066.5°60.0°
C21C22H41H42121.9°120.0°
C22C23O6O5137.7°180.0°
C22C23O6C2482.7°180.0°
C23C22C21H394.8°55.0°
C23C22H41H42121.8°120.0°
C23O6C24C25122.1°180.0°
O6C23C22H419.5°60.0°
O6C23C22H42130.7°59.9°
C23O6C24H43117.8°60.0°
C23O6C24H442.0°60.0°
O5C23O6C2454.9°0.0°
O5C23C22H41134.5°120.0°
O5C23C22H4213.3°120.0°
O6C24C25H43120.1°120.0°
O6C24C25H44120.1°120.0°
O6C24H43H44119.6°120.0°
O6C24C25H45180.0°60.0°
O6C24C25H4660.0°60.0°
O6C24C25H4760.0°180.0°
C25C24H43H44119.6°120.0°
C24C25H45H46120.0°120.0°
C24C25H45H47120.0°119.9°
C24C25H46H47120.0°120.0°
H28N3C16H29177.6°145.0°
H29C16C17H3056.5°175.0°
H29C16C17H31175.1°65.0°
H29C16C21H3947.5°60.0°
H29C16N3C122.4°35.0°
H30C17C18H32174.4°65.0°
H31C17C18H3267.1°175.1°
H32C18C19H3362.2°179.9°
H32C18C19H3457.8°60.0°
H32C18C19H35177.8°60.0°
H32C18C20H3662.1°60.0°
H32C18C20H3757.9°60.0°
H32C18C20H38177.9°180.0°
H33C19H34H35120.0°120.1°
H36C20H37H38120.0°120.0°
H39C21O4H4054.2°179.9°
H39C21C22H41124.2°175.0°
H39C21C22H42114.6°65.1°
H43C24C25H4559.9°180.0°
H43C24C25H46179.9°60.0°
H43C24C25H4760.1°60.0°
H44C24C25H4559.9°60.0°
H44C24C25H4660.1°180.0°
H44C24C25H47179.8°60.0°
H45C25H46H47120.0°120.0°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon