Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_001118

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1O1doub1.21Å1.24Å
C1C2sing1.51Å1.51Å
C2H1sing1.09Å1.10Å
C2H2sing1.09Å1.10Å
C2H3sing1.09Å1.10Å
N1C3sing1.47Å1.30Å
N1H4sing0.97Å1.00Å
C3C4sing1.51Å1.53Å
C3C5sing1.53Å1.54Å
C3H5sing1.09Å1.10Å
C4O2doub1.21Å1.24Å
C5C6sing1.51Å1.53Å
C5H6sing1.09Å1.10Å
C5H7sing1.09Å1.10Å
C6O3doub1.21Å1.25Å
C6O4sing1.34Å1.25Å
O4H8sing0.97Å0.95Å
N2C7sing1.47Å1.47Å
N2H9sing0.97Å1.00Å
C7C8sing1.51Å1.54Å
C7C9sing1.53Å1.53Å
C7H10sing1.09Å1.10Å
C8O5doub1.21Å1.23Å
C9O6sing1.43Å1.42Å
C9H11sing1.09Å1.10Å
C9H12sing1.09Å1.10Å
O6H13sing0.97Å0.95Å
N3C10sing1.47Å1.47Å
N3H14sing0.97Å1.00Å
C10C11sing1.51Å1.53Å
C10C12sing1.53Å1.54Å
C10H15sing1.09Å1.10Å
C11O7doub1.21Å1.24Å
C12C13sing1.51Å1.52Å
C12H16sing1.09Å1.10Å
C12H17sing1.09Å1.10Å
C13C14doub1.38Å1.40ÅAromatic
C13C15sing1.38Å1.40ÅAromatic
C14C16sing1.38Å1.40ÅAromatic
C14H18sing1.08Å1.08Å
C15C17doub1.38Å1.40ÅAromatic
C15H19sing1.08Å1.08Å
C16C18doub1.38Å1.39ÅAromatic
C16H20sing1.08Å1.08Å
C17C18sing1.38Å1.39ÅAromatic
C17H21sing1.08Å1.08Å
C18H22sing1.08Å1.08Å
N4C19sing1.47Å1.47Å
N4H23sing0.97Å1.00Å
C19C20sing1.51Å1.54Å
C19C21sing1.53Å1.54Å
C19H24sing1.09Å1.10Å
C20O8doub1.21Å1.24Å
C21C22sing1.51Å1.54Å
C21H25sing1.09Å1.10Å
C21H26sing1.09Å1.10Å
C22O9doub1.21Å1.25Å
C22O10sing1.34Å1.25Å
O10H27sing0.97Å0.95Å
C23C24sing1.53Å1.52Å
C23O11sing1.43Å1.22Å
C23H28sing1.09Å1.10Å
C23H29sing1.09Å1.10Å
N5C24sing1.47Å1.46Å
N5H30sing0.97Å1.00Å
O11H31sing0.97Å0.95Å
C25C24sing1.53Å1.53Å
C24H32sing1.09Å1.10Å
C25C27sing1.53Å1.53Å
C25H33sing1.09Å1.10Å
C25H34sing1.09Å1.10Å
O12C26doub1.21Å1.23Å
C27C26sing1.51Å1.52Å
C26N6sing1.35Å1.33Å
C27H35sing1.09Å1.10Å
C27H36sing1.09Å1.10Å
N6H37sing0.97Å1.00Å
N6H38sing0.97Å1.00Å
C1N1sing1.35Å1.34Å
C4N2sing1.35Å1.33Å
C8N3sing1.35Å1.34Å
C11N4sing1.35Å1.33Å
C20N5sing1.35Å1.33Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C1C2121.2°120.0°
O1C1N1122.5°120.0°
C1C2H1109.5°109.5°
C1C2H2109.5°109.5°
C1C2H3109.5°109.5°
C2C1N1116.2°120.0°
H1C2H2109.4°109.4°
H1C2H3109.5°109.4°
H2C2H3109.5°109.5°
C3N1H4120.7°120.0°
N1C3C4106.8°109.4°
N1C3C5105.1°109.4°
N1C3H5114.2°109.4°
C3N1C1118.5°120.0°
H4N1C1120.7°120.0°
C4C3C5109.8°109.5°
C4C3H5110.4°109.5°
C3C4O2120.7°120.0°
C3C4N2115.8°120.0°
C5C3H5110.3°109.5°
C3C5C6113.1°109.5°
C3C5H6108.6°109.5°
C3C5H7108.6°109.4°
O2C4N2123.4°120.0°
C6C5H6108.6°109.5°
C6C5H7108.5°109.4°
C5C6O3119.5°120.0°
C5C6O4117.9°120.0°
H6C5H7109.5°109.5°
O3C6O4122.5°120.0°
C6O4H8109.5°117.0°
C7N2H9118.2°120.0°
N2C7C8111.7°109.5°
N2C7C9109.8°109.4°
N2C7H10108.9°109.5°
C7N2C4123.5°120.0°
H9N2C4118.2°120.0°
C8C7C9110.2°109.5°
C8C7H10108.0°109.5°
C7C8O5120.2°120.0°
C7C8N3117.3°120.0°
C9C7H10108.1°109.5°
C7C9O6111.2°109.5°
C7C9H11109.0°109.5°
C7C9H12109.1°109.5°
O5C8N3122.5°120.0°
O6C9H11109.1°109.5°
O6C9H12109.0°109.5°
C9O6H13109.5°114.0°
H11C9H12109.4°109.5°
C10N3H14119.3°120.0°
N3C10C11113.5°109.4°
N3C10C12111.1°109.5°
N3C10H15107.8°109.5°
C10N3C8121.5°120.0°
H14N3C8119.3°120.0°
C11C10C12110.0°109.5°
C11C10H15107.1°109.5°
C10C11O7120.9°120.1°
C10C11N4115.5°120.0°
C12C10H15107.0°109.5°
C10C12C13114.1°109.5°
C10C12H16108.3°109.5°
C10C12H17108.3°109.5°
O7C11N4123.6°120.0°
C13C12H16108.3°109.4°
C13C12H17108.3°109.5°
C12C13C14120.4°120.0°
C12C13C15121.2°120.0°
H16C12H17109.5°109.5°
C14C13C15118.4°120.0°
C13C14C16121.0°120.0°
C13C14H18119.5°120.0°
C13C15C17120.8°120.0°
C13C15H19119.6°119.9°
C16C14H18119.5°120.0°
C14C16C18120.0°120.0°
C14C16H20120.0°120.0°
C17C15H19119.6°120.1°
C15C17C18120.2°120.0°
C15C17H21119.9°120.0°
C18C16H20120.0°120.0°
C16C18C17119.7°120.0°
C16C18H22120.2°120.0°
C18C17H21119.9°120.0°
C17C18H22120.2°120.0°
C19N4H23118.4°120.0°
N4C19C20112.5°109.5°
N4C19C21110.4°109.5°
N4C19H24108.2°109.4°
C19N4C11123.2°120.0°
H23N4C11118.4°120.0°
C20C19C21111.0°109.5°
C20C19H24107.3°109.4°
C19C20O8121.1°120.0°
C19C20N5137.2°120.0°
C21C19H24107.3°109.5°
C19C21C22113.0°109.5°
C19C21H25108.6°109.4°
C19C21H26108.6°109.4°
O8C20N592.6°120.0°
C22C21H25108.6°109.4°
C22C21H26108.6°109.5°
C21C22O9119.8°120.0°
C21C22O10118.2°120.0°
H25C21H26109.5°109.5°
O9C22O10122.0°120.0°
C22O10H27109.5°117.0°
C24C23O11122.2°109.5°
C24C23H28106.2°109.5°
C24C23H29106.2°109.5°
C23C24N5110.4°109.4°
C23C24C25108.5°109.5°
C23C24H32109.2°109.5°
O11C23H28106.2°109.5°
O11C23H29106.2°109.5°
C23O11H31109.5°114.0°
H28C23H29109.5°109.5°
C24N5H3098.3°120.0°
N5C24C25109.5°109.5°
N5C24H32110.1°109.5°
C24N5C20163.2°120.0°
H30N5C2098.4°120.0°
C25C24H32109.1°109.5°
C24C25C27114.9°109.5°
C24C25H33108.1°109.5°
C24C25H34108.1°109.4°
C27C25H33108.1°109.5°
C27C25H34108.1°109.5°
C25C27C26106.7°109.5°
C25C27H35110.2°109.5°
C25C27H36110.2°109.4°
H33C25H34109.5°109.5°
O12C26C27120.7°120.0°
O12C26N6122.7°120.0°
C27C26N6116.5°120.0°
C26C27H35110.1°109.5°
C26C27H36110.1°109.5°
C26N6H37120.0°120.0°
C26N6H38120.0°120.0°
H35C27H36109.5°109.4°
H37N6H38120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C1C2N1177.6°179.7°
O1C1C2H10.0°0.0°
O1C1C2H2120.0°119.9°
O1C1C2H3120.0°120.0°
O1C1N1C380.6°4.7°
O1C1N1H499.4°175.3°
C1C2H1H2120.0°120.0°
C1C2H1H3120.0°120.0°
C1C2H2H3120.0°120.1°
C2C1N1C3101.8°175.0°
C2C1N1H478.2°5.0°
H1C2H2H3120.0°120.0°
H1C2C1N1177.6°179.7°
H2C2C1N157.6°59.8°
H3C2C1N162.4°60.3°
C3N1H4C1180.0°180.0°
N1C3C4C5113.5°119.9°
N1C3C4H5124.7°120.0°
N1C3C5H5123.5°120.0°
N1C3C4O217.6°0.1°
N1C3C5C697.6°65.7°
N1C3C5H622.9°54.4°
N1C3C5H7141.8°174.4°
N1C3C4N2162.2°180.0°
H4N1C3C448.3°98.2°
H4N1C3C568.3°21.7°
H4N1C3H5170.7°141.8°
C4C3C5H5121.9°120.1°
C3C4O2N2179.8°179.9°
C4C3C5C6147.8°174.4°
C4C3C5H691.7°65.6°
C4C3C5H727.3°54.5°
C3C4N2C7174.9°180.0°
C3C4N2H95.0°0.0°
C4C3N1C1131.7°81.8°
C5C3C4O295.9°120.0°
C3C5C6H6120.5°120.1°
C3C5C6H7120.5°119.9°
C3C5H6H7118.4°120.0°
C3C5C6O322.4°5.4°
C3C5C6O4158.3°174.5°
C5C3N1C1111.7°158.2°
C5C3C4N284.4°60.1°
H5C3C4O2142.3°119.9°
H5C3C5C625.9°54.3°
H5C3C5H6146.4°174.4°
H5C3C5H794.6°65.6°
H5C3N1C19.3°38.2°
H5C3C4N237.5°60.0°
O2C4N2C75.3°0.1°
O2C4N2H9174.7°180.0°
C6C5H6H7118.3°120.0°
C5C6O3O4179.2°179.9°
C5C6O4H8179.2°180.0°
H6C5C6O3143.0°125.5°
H6C5C6O437.8°54.4°
H7C5C6O398.1°114.5°
H7C5C6O481.1°65.6°
O3C6O4H80.0°0.1°
C7N2H9C4180.0°179.9°
N2C7C8C9122.3°119.9°
N2C7C8H10119.8°120.0°
N2C7C9H10118.7°120.0°
N2C7C8O56.7°0.1°
N2C7C9O645.3°65.0°
N2C7C9H11165.6°175.0°
N2C7C9H1275.0°55.0°
N2C7C8N3173.2°180.0°
H9N2C7C889.0°24.9°
H9N2C7C933.6°95.0°
H9N2C7H10151.8°145.0°
C8C7C9H10117.9°120.0°
C7C8O5N3179.8°179.9°
C8C7C9O678.2°54.9°
C8C7C9H1142.1°65.0°
C8C7C9H12161.6°175.0°
C7C8N3C10177.8°180.0°
C7C8N3H142.2°0.0°
C8C7N2C491.0°155.0°
C9C7C8O5115.6°120.0°
C7C9O6H11120.3°120.0°
C7C9O6H12120.3°120.0°
C7C9H11H12119.2°120.0°
C7C9O6H13180.0°180.0°
C9C7N2C4146.4°85.0°
C9C7C8N364.5°60.1°
H10C7C8O5126.4°120.0°
H10C7C9O6164.0°175.0°
H10C7C9H1175.8°55.0°
H10C7C9H1243.7°65.0°
H10C7N2C428.3°34.9°
H10C7C8N353.4°60.0°
O5C8N3C102.1°0.0°
O5C8N3H14177.9°180.0°
O6C9H11H12119.2°120.0°
H11C9O6H1359.8°60.0°
H12C9O6H1359.7°60.0°
C10N3H14C8180.0°180.0°
N3C10C11C12125.2°120.0°
N3C10C11H15118.9°120.0°
N3C10C12H15117.5°120.0°
N3C10C11O767.2°0.0°
N3C10C12C13148.7°65.0°
N3C10C12H1628.0°54.9°
N3C10C12H1790.6°175.0°
N3C10C11N4114.5°180.0°
H14N3C10C1133.7°25.0°
H14N3C10C1290.9°95.0°
H14N3C10H15152.2°145.0°
C11C10C12H15116.0°120.0°
C10C11O7N4178.1°179.9°
C11C10C12C1384.7°175.0°
C11C10C12H16154.6°65.0°
C11C10C12H1736.0°55.0°
C10C11N4C19179.5°174.9°
C10C11N4H230.5°5.1°
C11C10N3C8146.3°155.0°
C12C10C11O758.0°120.0°
C10C12C13H16120.7°120.0°
C10C12C13H17120.7°120.0°
C10C12H16H17117.9°120.0°
C10C12C13C14115.9°90.0°
C10C12C13C1564.3°90.3°
C12C10N3C889.1°85.0°
C12C10C11N4120.3°60.0°
H15C10C11O7173.9°120.0°
H15C10C12C1331.3°55.0°
H15C10C12H1689.4°175.0°
H15C10C12H17151.9°65.0°
H15C10N3C827.8°35.0°
H15C10C11N44.4°60.0°
O7C11N4C192.2°5.1°
O7C11N4H23177.8°174.9°
C13C12H16H17117.9°120.0°
C12C13C14C15179.8°179.7°
C12C13C14C16179.6°180.0°
C12C13C14H180.4°0.1°
C12C13C15C17179.8°180.0°
C12C13C15H190.1°0.0°
H16C12C13C144.8°30.0°
H16C12C13C15175.0°149.7°
H17C12C13C14123.4°150.0°
H17C12C13C1556.4°29.7°
C13C14C16H18180.0°179.9°
C14C13C15C170.4°0.3°
C14C13C15H19179.7°179.7°
C13C14C16C180.5°0.0°
C13C14C16H20179.5°179.9°
C15C13C14C160.2°0.3°
C15C13C14H18179.8°179.7°
C13C15C17H19180.0°180.0°
C13C15C17C180.6°0.1°
C13C15C17H21179.5°179.9°
C14C16C18H20180.0°180.0°
C14C16C18C170.3°0.2°
C14C16C18H22179.7°180.0°
H18C14C16C18179.5°180.0°
H18C14C16H200.5°0.0°
C15C17C18C160.2°0.2°
C15C17C18H21180.0°179.9°
C15C17C18H22179.7°180.0°
H19C15C17C18179.5°179.9°
H19C15C17H210.5°0.1°
C16C18C17H22180.0°179.8°
C16C18C17H21179.8°179.7°
H20C16C18C17179.7°179.8°
H20C16C18H220.2°0.0°
H21C17C18H220.2°0.1°
C19N4H23C11180.0°180.0°
N4C19C20C21124.2°120.1°
N4C19C20H24118.9°119.9°
N4C19C21H24117.7°120.0°
N4C19C20O8136.1°0.1°
N4C19C21C2271.6°65.6°
N4C19C21H2549.0°54.3°
N4C19C21H26167.9°174.3°
N4C19C20N587.2°180.0°
H23N4C19C20102.4°98.0°
H23N4C19C2122.1°22.0°
H23N4C19H24139.2°142.1°
C20C19C21H24117.0°120.0°
C19C20O8N5152.2°179.9°
C20C19C21C22163.1°174.3°
C20C19C21H2576.4°65.7°
C20C19C21H2642.6°54.3°
C19C20N5C24168.3°180.0°
C19C20N5H3011.6°0.1°
C20C19N4C1177.6°82.0°
C21C19C20O811.9°120.0°
C19C21C22H25120.5°119.9°
C19C21C22H26120.5°120.0°
C19C21H25H26118.4°120.0°
C19C21C22O957.3°4.5°
C19C21C22O10124.2°175.4°
C21C19N4C11157.9°158.0°
C21C19C20N5148.6°59.9°
H24C19C20O8105.0°120.0°
H24C19C21C2246.1°54.4°
H24C19C21H25166.7°174.3°
H24C19C21H2674.4°65.7°
H24C19N4C1140.8°37.9°
H24C19C20N531.7°60.1°
O8C20N5C2447.7°0.1°
O8C20N5H30132.3°180.0°
C22C21H25H26118.4°120.1°
C21C22O9O10178.5°179.9°
C21C22O10H27178.5°180.0°
H25C21C22O9177.8°115.4°
H25C21C22O103.6°64.7°
H26C21C22O963.2°124.5°
H26C21C22O10115.3°55.4°
O9C22O10H270.0°0.1°
C24C23O11H28121.7°120.0°
C24C23O11H29121.8°120.0°
C24C23H28H29114.3°120.0°
C23C24N5C25119.4°120.0°
C23C24N5H32120.7°120.0°
C23C24N5H30105.8°95.1°
C24C23O11H3136.9°180.0°
C23C24C25H32118.8°120.0°
C23C24C25C27157.2°175.0°
C23C24C25H3382.0°65.0°
C23C24C25H3436.4°55.0°
C23C24N5C2074.3°85.0°
O11C23H28H29114.2°120.0°
O11C23C24N554.6°65.0°
O11C23C24C25174.6°55.0°
O11C23C24H3266.6°175.0°
H28C23C24N5176.3°175.0°
H28C23O11H31158.7°60.0°
H28C23C24C2563.7°65.0°
H28C23C24H3255.1°55.0°
H29C23C24N567.2°55.0°
H29C23O11H3184.8°60.0°
H29C23C24C2552.9°175.0°
H29C23C24H32171.6°65.0°
C24N5H30C20180.0°179.9°
N5C24C25H32120.6°120.0°
N5C24C25C2782.2°65.0°
N5C24C25H3338.6°55.0°
N5C24C25H34157.0°175.0°
H30N5C24C2513.6°25.0°
H30N5C24H32133.6°145.0°
C24C25C27H33120.8°120.0°
C24C25C27H34120.8°120.0°
C24C25H33H34117.5°120.0°
C24C25C27C26167.0°180.0°
C24C25C27H3547.4°60.0°
C24C25C27H3673.5°60.0°
C25C24N5C20166.4°154.9°
H32C24C25C2738.4°55.0°
H32C24C25H33159.2°175.0°
H32C24C25H3482.4°65.0°
H32C24N5C2046.4°34.9°
C27C25H33H34117.5°120.0°
C25C27C26O1257.7°0.1°
C25C27C26H35119.6°120.1°
C25C27C26H36119.6°120.0°
C25C27C26N6121.4°180.0°
C25C27H35H36121.3°120.0°
H33C25C27C2672.2°59.9°
H33C25C27H35168.2°180.0°
H33C25C27H3647.3°60.0°
H34C25C27C2646.2°60.1°
H34C25C27H3573.3°60.0°
H34C25C27H36165.8°179.9°
O12C26C27N6179.1°180.0°
O12C26C27H35177.2°120.0°
O12C26C27H3661.9°120.0°
O12C26N6H370.0°180.0°
O12C26N6H38180.0°0.0°
C26C27H35H36121.2°120.0°
C27C26N6H37179.0°0.0°
C27C26N6H380.9°180.0°
N6C26C27H351.8°59.9°
N6C26C27H36119.0°60.0°
C26N6H37H38180.0°180.0°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon