PRD_001053
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N3 | CA3 | sing | 1.46Å | 1.48Å | |
CA3 | C3 | sing | 1.51Å | 1.53Å | |
C3 | O3 | doub | 1.21Å | 1.21Å | |
C3 | N4 | sing | 1.35Å | 1.55Å | |
C4 | O4 | sing | 1.43Å | 1.38Å | |
C4 | CA4 | sing | 1.53Å | 1.52Å | |
C4 | C15 | sing | 1.53Å | 1.57Å | |
CA4 | N4 | sing | 1.47Å | 1.49Å | |
CA4 | CB4 | sing | 1.53Å | 1.56Å | |
CB4 | CG4 | sing | 1.51Å | 1.49Å | |
CG4 | CD1 | doub | 1.38Å | 1.40Å | Aromatic |
CG4 | CD2 | sing | 1.38Å | 1.39Å | Aromatic |
CD1 | CE1 | sing | 1.38Å | 1.38Å | Aromatic |
CD2 | CE2 | doub | 1.38Å | 1.39Å | Aromatic |
CE1 | CZ4 | doub | 1.38Å | 1.39Å | Aromatic |
CE2 | CZ4 | sing | 1.38Å | 1.36Å | Aromatic |
N3 | C13 | sing | 1.35Å | 1.47Å | |
C13 | C14 | sing | 1.51Å | 1.54Å | |
C13 | O31 | doub | 1.21Å | 1.22Å | |
C14 | N31 | sing | 1.47Å | 1.47Å | |
N31 | C23 | sing | 1.35Å | 1.47Å | |
C23 | O41 | doub | 1.22Å | 1.22Å | |
C23 | O5 | sing | 1.35Å | 1.43Å | |
O5 | C16 | sing | 1.45Å | 1.43Å | |
C17 | C18 | sing | 1.38Å | 0.00Å | Aromatic |
C18 | C19 | doub | 1.38Å | 0.00Å | Aromatic |
C19 | C20 | sing | 1.38Å | 0.00Å | Aromatic |
C20 | C21 | doub | 1.38Å | 0.00Å | Aromatic |
C21 | C22 | sing | 1.38Å | 0.00Å | Aromatic |
C17 | C22 | doub | 1.38Å | 0.00Å | Aromatic |
C20 | C16 | sing | 1.51Å | 43.28Å | |
N3 | HN3 | sing | 0.97Å | 1.00Å | |
CA3 | HA3 | sing | 1.09Å | 1.10Å | |
CA3 | HA3A | sing | 1.09Å | 1.10Å | |
C4 | H4 | sing | 1.09Å | 1.10Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å | |
CA4 | HA4 | sing | 1.09Å | 1.10Å | |
N4 | HN4 | sing | 0.97Å | 1.00Å | |
CB4 | HB4 | sing | 1.09Å | 1.10Å | |
CB4 | HB4A | sing | 1.09Å | 1.10Å | |
CD1 | HD1 | sing | 1.08Å | 1.08Å | |
CD2 | HD2 | sing | 1.08Å | 1.08Å | |
CE1 | HE1 | sing | 1.08Å | 1.08Å | |
CE2 | HE2 | sing | 1.08Å | 1.08Å | |
CZ4 | HZ4 | sing | 1.08Å | 1.08Å | |
C15 | H15 | sing | 1.09Å | 1.10Å | |
C15 | H15A | sing | 1.09Å | 1.10Å | |
C15 | CL1 | sing | 1.80Å | 1.83Å | |
C14 | H18 | sing | 1.09Å | 1.10Å | |
C14 | H19 | sing | 1.09Å | 1.10Å | |
N31 | H20 | sing | 0.97Å | 1.00Å | |
C16 | H21 | sing | 1.09Å | 1.10Å | |
C16 | H22 | sing | 1.09Å | 1.10Å | |
C17 | H23 | sing | 1.08Å | 0.00Å | |
C18 | H24 | sing | 1.08Å | 0.00Å | |
C19 | H25 | sing | 1.08Å | 0.00Å | |
C21 | H26 | sing | 1.08Å | 0.00Å | |
C22 | H27 | sing | 1.08Å | 0.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N3 | CA3 | C3 | 105.1° | 109.4° |
CA3 | N3 | C13 | 96.6° | 120.0° |
CA3 | N3 | HN3 | 131.7° | 120.0° |
N3 | CA3 | HA3 | 110.5° | 109.5° |
N3 | CA3 | HA3A | 110.5° | 109.5° |
CA3 | C3 | O3 | 127.7° | 120.0° |
CA3 | C3 | N4 | 112.5° | 120.0° |
C3 | CA3 | HA3 | 110.5° | 109.5° |
C3 | CA3 | HA3A | 110.6° | 109.5° |
O3 | C3 | N4 | 118.2° | 120.0° |
C3 | N4 | CA4 | 116.6° | 120.0° |
C3 | N4 | HN4 | 121.7° | 120.0° |
O4 | C4 | CA4 | 107.9° | 109.5° |
O4 | C4 | C15 | 122.1° | 109.5° |
O4 | C4 | H4 | 103.7° | 109.5° |
C4 | O4 | HO4 | 109.5° | 114.0° |
CA4 | C4 | C15 | 115.7° | 109.5° |
C4 | CA4 | N4 | 105.8° | 109.5° |
C4 | CA4 | CB4 | 115.8° | 109.5° |
CA4 | C4 | H4 | 102.4° | 109.4° |
C4 | CA4 | HA4 | 111.5° | 109.4° |
C15 | C4 | H4 | 102.0° | 109.5° |
C4 | C15 | H15 | 110.7° | 109.5° |
C4 | C15 | H15A | 110.7° | 109.5° |
C4 | C15 | CL1 | 104.6° | 109.5° |
N4 | CA4 | CB4 | 100.3° | 109.5° |
N4 | CA4 | HA4 | 111.9° | 109.4° |
CA4 | N4 | HN4 | 121.7° | 120.0° |
CA4 | CB4 | CG4 | 113.8° | 109.5° |
CB4 | CA4 | HA4 | 110.9° | 109.5° |
CA4 | CB4 | HB4 | 108.4° | 109.5° |
CA4 | CB4 | HB4A | 108.4° | 109.5° |
CB4 | CG4 | CD1 | 124.9° | 120.0° |
CB4 | CG4 | CD2 | 118.8° | 120.0° |
CG4 | CB4 | HB4 | 108.4° | 109.5° |
CG4 | CB4 | HB4A | 108.4° | 109.4° |
CD1 | CG4 | CD2 | 116.2° | 120.0° |
CG4 | CD1 | CE1 | 123.3° | 120.0° |
CG4 | CD1 | HD1 | 118.3° | 120.0° |
CG4 | CD2 | CE2 | 121.3° | 120.0° |
CG4 | CD2 | HD2 | 119.4° | 120.0° |
CD1 | CE1 | CZ4 | 117.7° | 120.0° |
CE1 | CD1 | HD1 | 118.3° | 120.0° |
CD1 | CE1 | HE1 | 121.1° | 120.0° |
CD2 | CE2 | CZ4 | 120.6° | 120.0° |
CE2 | CD2 | HD2 | 119.4° | 120.0° |
CD2 | CE2 | HE2 | 119.7° | 119.9° |
CE1 | CZ4 | CE2 | 120.8° | 120.0° |
CZ4 | CE1 | HE1 | 121.2° | 120.0° |
CE1 | CZ4 | HZ4 | 119.6° | 120.0° |
CZ4 | CE2 | HE2 | 119.7° | 120.0° |
CE2 | CZ4 | HZ4 | 119.6° | 120.0° |
N3 | C13 | C14 | 120.0° | 120.0° |
N3 | C13 | O31 | 105.0° | 120.0° |
C13 | N3 | HN3 | 131.7° | 120.0° |
C14 | C13 | O31 | 135.0° | 120.0° |
C13 | C14 | N31 | 120.0° | 109.5° |
C13 | C14 | H18 | 106.8° | 109.5° |
C13 | C14 | H19 | 106.8° | 109.5° |
C14 | N31 | C23 | 120.0° | 120.0° |
N31 | C14 | H18 | 106.8° | 109.5° |
N31 | C14 | H19 | 106.8° | 109.4° |
C14 | N31 | H20 | 120.0° | 120.0° |
N31 | C23 | O41 | 109.4° | 120.0° |
N31 | C23 | O5 | 109.5° | 120.0° |
C23 | N31 | H20 | 120.0° | 120.0° |
O41 | C23 | O5 | 109.5° | 120.0° |
C23 | O5 | C16 | 134.8° | 117.0° |
O5 | C16 | C20 | 115.7° | 109.5° |
O5 | C16 | H21 | 107.9° | 109.5° |
O5 | C16 | H22 | 107.9° | 109.5° |
C17 | C18 | C19 | 90.0° | 120.0° |
C18 | C17 | C22 | 90.0° | 120.0° |
C18 | C17 | H23 | 90.0° | 120.0° |
C17 | C18 | H24 | 90.0° | 120.0° |
C18 | C19 | C20 | 90.0° | 120.0° |
C19 | C18 | H24 | 90.0° | 120.0° |
C18 | C19 | H25 | 90.0° | 120.0° |
C19 | C20 | C21 | 90.0° | 120.0° |
C19 | C20 | C16 | 90.0° | 120.0° |
C20 | C19 | H25 | 90.0° | 120.0° |
C20 | C21 | C22 | 90.0° | 120.0° |
C21 | C20 | C16 | 90.0° | 120.0° |
C20 | C21 | H26 | 90.0° | 120.0° |
C21 | C22 | C17 | 90.0° | 120.0° |
C22 | C21 | H26 | 90.0° | 120.0° |
C21 | C22 | H27 | 90.0° | 120.0° |
C22 | C17 | H23 | 90.0° | 120.0° |
C17 | C22 | H27 | 90.0° | 120.0° |
C20 | C16 | H21 | 107.9° | 109.5° |
C20 | C16 | H22 | 107.9° | 109.5° |
HA3 | CA3 | HA3A | 109.5° | 109.5° |
HB4 | CB4 | HB4A | 109.5° | 109.5° |
H15 | C15 | H15A | 109.5° | 109.4° |
H15 | C15 | CL1 | 110.7° | 109.5° |
H15A | C15 | CL1 | 110.7° | 109.5° |
H18 | C14 | H19 | 109.4° | 109.5° |
H21 | C16 | H22 | 109.4° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N3 | CA3 | C3 | HA3 | 119.3° | 120.0° |
N3 | CA3 | C3 | HA3A | 119.3° | 120.0° |
N3 | CA3 | C3 | O3 | 20.7° | 0.0° |
N3 | CA3 | C3 | N4 | 144.4° | 180.0° |
CA3 | N3 | C13 | HN3 | 180.0° | 180.0° |
CA3 | N3 | C13 | C14 | 180.0° | 180.0° |
CA3 | N3 | C13 | O31 | 0.7° | 0.1° |
N3 | CA3 | HA3 | HA3A | 122.0° | 120.0° |
CA3 | C3 | O3 | N4 | 164.3° | 180.0° |
CA3 | C3 | N4 | CA4 | 179.7° | 180.0° |
C3 | CA3 | N3 | C13 | 179.0° | 180.0° |
C3 | CA3 | N3 | HN3 | 1.0° | 0.0° |
C3 | CA3 | HA3 | HA3A | 122.0° | 120.0° |
CA3 | C3 | N4 | HN4 | 0.3° | 0.0° |
O3 | C3 | N4 | CA4 | 13.7° | 0.0° |
O3 | C3 | CA3 | HA3 | 98.6° | 120.0° |
O3 | C3 | CA3 | HA3A | 140.0° | 120.0° |
O3 | C3 | N4 | HN4 | 166.3° | 180.0° |
C3 | N4 | CA4 | C4 | 101.0° | 85.0° |
C3 | N4 | CA4 | HN4 | 180.0° | 180.0° |
C3 | N4 | CA4 | CB4 | 138.2° | 155.0° |
N4 | C3 | CA3 | HA3 | 96.4° | 60.0° |
N4 | C3 | CA3 | HA3A | 25.0° | 60.0° |
C3 | N4 | CA4 | HA4 | 20.6° | 35.0° |
O4 | C4 | CA4 | C15 | 140.9° | 120.0° |
O4 | C4 | CA4 | H4 | 109.1° | 120.0° |
O4 | C4 | C15 | H4 | 114.8° | 120.0° |
O4 | C4 | CA4 | N4 | 52.4° | 60.0° |
O4 | C4 | CA4 | CB4 | 57.6° | 180.0° |
O4 | C4 | CA4 | HA4 | 174.3° | 60.0° |
O4 | C4 | C15 | H15 | 30.9° | 55.0° |
O4 | C4 | C15 | H15A | 90.7° | 175.0° |
O4 | C4 | C15 | CL1 | 150.1° | 65.0° |
CA4 | C4 | C15 | H4 | 110.3° | 120.0° |
C4 | CA4 | N4 | CB4 | 120.8° | 120.0° |
C4 | CA4 | N4 | HA4 | 121.6° | 119.9° |
C4 | CA4 | CB4 | HA4 | 128.3° | 120.0° |
C4 | CA4 | CB4 | CG4 | 179.2° | 175.0° |
CA4 | C4 | O4 | HO4 | 180.0° | 60.0° |
C4 | CA4 | N4 | HN4 | 79.0° | 95.0° |
C4 | CA4 | CB4 | HB4 | 58.5° | 65.0° |
C4 | CA4 | CB4 | HB4A | 60.2° | 55.0° |
CA4 | C4 | C15 | H15 | 165.7° | 65.0° |
CA4 | C4 | C15 | H15A | 44.2° | 55.0° |
CA4 | C4 | C15 | CL1 | 75.0° | 175.0° |
C15 | C4 | CA4 | N4 | 88.4° | 180.0° |
C15 | C4 | CA4 | CB4 | 161.5° | 60.0° |
C15 | C4 | O4 | HO4 | 42.2° | 180.0° |
C15 | C4 | CA4 | HA4 | 33.5° | 60.0° |
C4 | C15 | H15 | H15A | 122.2° | 120.0° |
C4 | C15 | H15 | CL1 | 115.5° | 120.0° |
C4 | C15 | H15A | CL1 | 115.5° | 120.0° |
N4 | CA4 | CB4 | HA4 | 118.4° | 120.0° |
N4 | CA4 | CB4 | CG4 | 65.9° | 65.0° |
N4 | CA4 | C4 | H4 | 161.5° | 60.1° |
N4 | CA4 | CB4 | HB4 | 54.7° | 55.0° |
N4 | CA4 | CB4 | HB4A | 173.5° | 175.0° |
CA4 | CB4 | CG4 | HB4 | 120.7° | 120.0° |
CA4 | CB4 | CG4 | HB4A | 120.6° | 120.0° |
CA4 | CB4 | CG4 | CD1 | 63.8° | 90.0° |
CA4 | CB4 | CG4 | CD2 | 119.9° | 90.3° |
CB4 | CA4 | C4 | H4 | 51.4° | 60.0° |
CB4 | CA4 | N4 | HN4 | 41.8° | 25.0° |
CA4 | CB4 | HB4 | HB4A | 118.1° | 120.0° |
CB4 | CG4 | CD1 | CD2 | 176.4° | 179.7° |
CB4 | CG4 | CD1 | CE1 | 178.7° | 180.0° |
CB4 | CG4 | CD2 | CE2 | 179.2° | 180.0° |
CG4 | CB4 | CA4 | HA4 | 52.5° | 55.0° |
CG4 | CB4 | HB4 | HB4A | 118.0° | 120.0° |
CB4 | CG4 | CD1 | HD1 | 1.3° | 0.1° |
CB4 | CG4 | CD2 | HD2 | 0.8° | 0.0° |
CG4 | CD1 | CE1 | HD1 | 180.0° | 180.0° |
CD1 | CG4 | CD2 | CE2 | 2.6° | 0.3° |
CG4 | CD1 | CE1 | CZ4 | 0.5° | 0.0° |
CD1 | CG4 | CB4 | HB4 | 175.6° | 30.0° |
CD1 | CG4 | CB4 | HB4A | 56.8° | 150.0° |
CD1 | CG4 | CD2 | HD2 | 177.4° | 179.7° |
CG4 | CD1 | CE1 | HE1 | 179.5° | 179.9° |
CD2 | CG4 | CD1 | CE1 | 2.3° | 0.3° |
CG4 | CD2 | CE2 | HD2 | 180.0° | 180.0° |
CG4 | CD2 | CE2 | CZ4 | 0.2° | 0.0° |
CD2 | CG4 | CB4 | HB4 | 0.7° | 149.7° |
CD2 | CG4 | CB4 | HB4A | 119.5° | 29.7° |
CD2 | CG4 | CD1 | HD1 | 177.7° | 179.8° |
CG4 | CD2 | CE2 | HE2 | 179.9° | 180.0° |
CD1 | CE1 | CZ4 | HE1 | 180.0° | 179.9° |
CD1 | CE1 | CZ4 | CE2 | 3.0° | 0.3° |
CD1 | CE1 | CZ4 | HZ4 | 177.0° | 180.0° |
CD2 | CE2 | CZ4 | CE1 | 2.8° | 0.3° |
CD2 | CE2 | CZ4 | HE2 | 180.0° | 180.0° |
CD2 | CE2 | CZ4 | HZ4 | 177.3° | 180.0° |
CE1 | CZ4 | CE2 | HZ4 | 180.0° | 179.7° |
CZ4 | CE1 | CD1 | HD1 | 179.5° | 180.0° |
CE1 | CZ4 | CE2 | HE2 | 177.2° | 179.7° |
CZ4 | CE2 | CD2 | HD2 | 179.8° | 180.0° |
CE2 | CZ4 | CE1 | HE1 | 176.9° | 179.8° |
N3 | C13 | C14 | O31 | 178.9° | 179.9° |
N3 | C13 | C14 | N31 | 1.0° | 180.0° |
C13 | N3 | CA3 | HA3 | 59.7° | 60.0° |
C13 | N3 | CA3 | HA3A | 61.7° | 60.0° |
N3 | C13 | C14 | H18 | 120.5° | 60.0° |
N3 | C13 | C14 | H19 | 122.5° | 60.0° |
C13 | C14 | N31 | H18 | 121.5° | 120.0° |
C13 | C14 | N31 | H19 | 121.5° | 120.0° |
C13 | C14 | N31 | C23 | 179.2° | 180.0° |
C14 | C13 | N3 | HN3 | 0.0° | 0.0° |
C13 | C14 | H18 | H19 | 115.2° | 120.1° |
C13 | C14 | N31 | H20 | 0.8° | 0.0° |
O31 | C13 | C14 | N31 | 180.0° | 0.0° |
O31 | C13 | N3 | HN3 | 179.2° | 180.0° |
O31 | C13 | C14 | H18 | 58.5° | 120.0° |
O31 | C13 | C14 | H19 | 58.5° | 119.9° |
C14 | N31 | C23 | H20 | 180.0° | 180.0° |
C14 | N31 | C23 | O41 | 31.7° | 0.0° |
C14 | N31 | C23 | O5 | 151.7° | 179.7° |
N31 | C14 | H18 | H19 | 115.2° | 120.0° |
N31 | C23 | O41 | O5 | 120.0° | 179.8° |
N31 | C23 | O5 | C16 | 160.7° | 179.7° |
C23 | N31 | C14 | H18 | 59.3° | 60.0° |
C23 | N31 | C14 | H19 | 57.7° | 60.0° |
O41 | C23 | O5 | C16 | 79.4° | 0.0° |
O41 | C23 | N31 | H20 | 148.3° | 180.0° |
C23 | O5 | C16 | C20 | 127.9° | 180.0° |
O5 | C23 | N31 | H20 | 28.3° | 0.3° |
C23 | O5 | C16 | H21 | 111.1° | 60.0° |
C23 | O5 | C16 | H22 | 7.0° | 60.0° |
O5 | C16 | C20 | C19 | 90.0° | 89.7° |
O5 | C16 | C20 | C21 | 90.0° | 90.0° |
O5 | C16 | C20 | H21 | 120.9° | 120.0° |
O5 | C16 | C20 | H22 | 120.9° | 120.0° |
O5 | C16 | H21 | H22 | 117.1° | 120.0° |
C17 | C18 | C19 | H24 | 90.0° | 180.0° |
C17 | C18 | C19 | C20 | 90.0° | 0.0° |
C18 | C17 | C22 | C21 | 90.0° | 0.0° |
C18 | C17 | C22 | H23 | 90.0° | 180.0° |
C17 | C18 | C19 | H25 | 90.0° | 180.0° |
C18 | C17 | C22 | H27 | 90.0° | 180.0° |
C18 | C19 | C20 | H25 | 90.0° | 179.9° |
C18 | C19 | C20 | C21 | 90.0° | 0.0° |
C19 | C18 | C17 | C22 | 90.0° | 0.0° |
C18 | C19 | C20 | C16 | 90.0° | 179.7° |
C19 | C18 | C17 | H23 | 90.0° | 180.0° |
C19 | C20 | C21 | C16 | 90.0° | 179.7° |
C19 | C20 | C21 | C22 | 90.0° | 0.0° |
C19 | C20 | C16 | H21 | 90.0° | 150.3° |
C19 | C20 | C16 | H22 | 90.0° | 30.3° |
C20 | C19 | C18 | H24 | 90.0° | 180.0° |
C19 | C20 | C21 | H26 | 90.0° | 179.7° |
C20 | C21 | C22 | H26 | 90.0° | 179.7° |
C20 | C21 | C22 | C17 | 90.0° | 0.0° |
C21 | C20 | C16 | H21 | 90.0° | 30.0° |
C21 | C20 | C16 | H22 | 90.0° | 150.0° |
C21 | C20 | C19 | H25 | 90.0° | 180.0° |
C20 | C21 | C22 | H27 | 90.0° | 180.0° |
C21 | C22 | C17 | H27 | 90.0° | 179.9° |
C22 | C21 | C20 | C16 | 90.0° | 179.7° |
C21 | C22 | C17 | H23 | 90.0° | 179.9° |
C22 | C17 | C18 | H24 | 90.0° | 180.0° |
C17 | C22 | C21 | H26 | 90.0° | 179.7° |
C20 | C16 | H21 | H22 | 117.1° | 120.0° |
C16 | C20 | C19 | H25 | 90.0° | 0.3° |
C16 | C20 | C21 | H26 | 90.0° | 0.1° |
HN3 | N3 | CA3 | HA3 | 120.3° | 120.0° |
HN3 | N3 | CA3 | HA3A | 118.3° | 120.0° |
H4 | C4 | O4 | HO4 | 71.8° | 60.0° |
H4 | C4 | CA4 | HA4 | 76.6° | NaN° |
H4 | C4 | C15 | H15 | 84.0° | 175.1° |
H4 | C4 | C15 | H15A | 154.5° | 65.0° |
H4 | C4 | C15 | CL1 | 35.3° | 55.0° |
HA4 | CA4 | N4 | HN4 | 159.4° | 145.0° |
HA4 | CA4 | CB4 | HB4 | 173.1° | 175.0° |
HA4 | CA4 | CB4 | HB4A | 68.1° | 65.0° |
HD1 | CD1 | CE1 | HE1 | 0.5° | 0.0° |
HD2 | CD2 | CE2 | HE2 | 0.1° | 0.0° |
HE1 | CE1 | CZ4 | HZ4 | 3.0° | 0.0° |
HE2 | CE2 | CZ4 | HZ4 | 2.8° | 0.1° |
H15 | C15 | H15A | CL1 | 122.2° | 120.0° |
H18 | C14 | N31 | H20 | 120.7° | 120.0° |
H19 | C14 | N31 | H20 | 122.3° | 120.0° |
H23 | C17 | C18 | H24 | 90.0° | 0.1° |
H23 | C17 | C22 | H27 | 90.0° | 0.0° |
H24 | C18 | C19 | H25 | 90.0° | 0.0° |
H26 | C21 | C22 | H27 | 90.0° | 0.4° |