Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_000987

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C6C1doub1.38Å1.39ÅAromatic
C1C2sing1.38Å1.39ÅAromatic
C1H1sing1.08Å1.08Å
C3C2doub1.38Å1.39ÅAromatic
C2H2sing1.08Å1.08Å
C4C3sing1.38Å1.39ÅAromatic
C3H3sing1.08Å1.08Å
C5C4doub1.38Å1.39ÅAromatic
C7C4sing1.51Å1.51Å
C5C6sing1.38Å1.39ÅAromatic
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
O8C7sing1.45Å1.43Å
C7H7sing1.09Å1.10Å
C7H7Asing1.09Å1.10Å
C9O8sing1.35Å1.44Å
N10C9sing1.35Å1.33Å
O21C9doub1.21Å1.21Å
C11N10sing1.46Å1.46Å
N10HN10sing0.97Å1.00Å
P12C11sing1.82Å1.80Å
C11H11sing1.09Å1.10Å
C11H11Asing1.09Å1.10Å
N13P12sing1.68Å1.67Å
P12O22doub1.48Å1.48Å
P12O23sing1.61Å1.51Å
C14N13sing1.47Å1.46Å
N13HN13sing1.01Å1.00Å
C20C14sing1.53Å1.53Å
C14C15sing1.51Å1.51Å
C14H14sing1.09Å1.10Å
C15O24doub1.21Å1.23Å
C15N16sing1.35Å1.33Å
N16C17sing1.47Å1.46Å
N16HN16sing0.97Å1.00Å
C25C17sing1.53Å1.53Å
C17C18sing1.51Å1.50Å
C17H17sing1.09Å1.10Å
C18O19doub1.21Å1.26Å
C18O32sing1.34Å1.24Å
C21C20sing1.53Å1.53Å
C20H20sing1.09Å1.10Å
C20H20Asing1.09Å1.10Å
C22C21sing1.53Å1.53Å
C21C23sing1.53Å1.53Å
C21H21sing1.09Å1.10Å
C22H22sing1.09Å1.10Å
C22H22Asing1.09Å1.10Å
C22H22Bsing1.09Å1.10Å
C23H23sing1.09Å1.10Å
C23H23Asing1.09Å1.10Å
C23H23Bsing1.09Å1.10Å
O23HO23sing0.97Å0.95Å
C26C25sing1.53Å1.52Å
C31C25sing1.53Å1.52Å
C25H25sing1.09Å1.10Å
C26H26sing1.09Å1.10Å
C26H26Asing1.09Å1.10Å
C26H26Bsing1.09Å1.10Å
C31H31sing1.09Å1.10Å
C31H31Asing1.09Å1.10Å
C31H31Bsing1.09Å1.10Å
O32HO32sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C6C1C2120.0°120.0°
C6C1H1120.0°120.0°
C1C6C5120.0°120.0°
C1C6H6120.0°120.0°
C2C1H1120.0°120.0°
C1C2C3120.0°120.0°
C1C2H2120.0°120.0°
C3C2H2120.0°120.0°
C2C3C4119.9°120.0°
C2C3H3120.1°120.0°
C4C3H3120.1°120.0°
C3C4C5120.3°120.0°
C3C4C7120.7°120.0°
C5C4C7119.0°120.0°
C4C5C6119.8°120.0°
C4C5H5120.1°120.0°
C4C7O8108.5°109.5°
C4C7H7109.8°109.5°
C4C7H7A109.8°109.4°
C6C5H5120.1°120.0°
C5C6H6120.0°120.0°
O8C7H7109.8°109.5°
O8C7H7A109.8°109.5°
C7O8C9118.5°117.0°
H7C7H7A109.1°109.5°
O8C9N10121.1°119.9°
O8C9O21116.4°120.1°
N10C9O21122.5°120.0°
C9N10C11125.6°119.9°
C9N10HN10117.2°120.0°
C11N10HN10117.2°120.0°
N10C11P12110.8°109.5°
N10C11H11109.0°109.5°
N10C11H11A109.0°109.5°
P12C11H11109.0°109.4°
P12C11H11A109.0°109.4°
C11P12N13102.1°109.5°
C11P12O22109.2°109.5°
C11P12O23110.3°109.5°
H11C11H11A109.9°109.5°
N13P12O22111.6°109.5°
N13P12O23107.8°109.4°
P12N13C14121.8°111.0°
P12N13HN13105.6°111.0°
O22P12O23115.1°109.5°
P12O23HO23109.5°114.0°
C14N13HN13105.5°111.0°
N13C14C20105.0°109.5°
N13C14C15114.1°109.5°
N13C14H14109.4°109.4°
C20C14C15109.4°109.4°
C20C14H14114.1°109.5°
C14C20C21112.7°109.5°
C14C20H20108.4°109.5°
C14C20H20A108.4°109.5°
C15C14H14105.1°109.5°
C14C15O24120.2°120.0°
C14C15N16117.5°120.0°
O24C15N16122.4°120.0°
C15N16C17118.4°120.0°
C15N16HN16120.8°120.0°
C17N16HN16120.8°120.0°
N16C17C25111.0°109.5°
N16C17C18110.2°109.4°
N16C17H17108.4°109.5°
C25C17C18110.9°109.5°
C25C17H17107.7°109.5°
C17C25C26112.3°109.5°
C17C25C31112.2°109.5°
C17C25H25106.1°109.5°
C18C17H17108.5°109.5°
C17C18O19121.3°120.0°
C17C18O32116.0°120.0°
O19C18O32122.7°120.0°
C18O32HO32109.5°117.0°
C21C20H20108.4°109.5°
C21C20H20A108.4°109.5°
C20C21C22110.1°109.5°
C20C21C23112.5°109.4°
C20C21H21107.3°109.5°
H20C20H20A110.5°109.5°
C22C21C23110.4°109.5°
C22C21H21109.5°109.5°
C21C22H22109.5°109.5°
C21C22H22A109.5°109.5°
C21C22H22B109.4°109.5°
C23C21H21107.0°109.5°
C21C23H23109.5°109.5°
C21C23H23A109.4°109.4°
C21C23H23B109.5°109.5°
H22C22H22A109.4°109.4°
H22C22H22B109.5°109.5°
H22AC22H22B109.5°109.4°
H23C23H23A109.5°109.5°
H23C23H23B109.5°109.5°
H23AC23H23B109.5°109.5°
C26C25C31111.2°109.4°
C26C25H25107.2°109.5°
C25C26H26109.5°109.5°
C25C26H26A109.5°109.5°
C25C26H26B109.5°109.5°
C31C25H25107.4°109.5°
C25C31H31109.5°109.5°
C25C31H31A109.5°109.5°
C25C31H31B109.5°109.5°
H26C26H26A109.5°109.5°
H26C26H26B109.4°109.5°
H26AC26H26B109.5°109.4°
H31C31H31A109.5°109.4°
H31C31H31B109.5°109.5°
H31AC31H31B109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C6C1C2H1180.0°179.9°
C6C1C2C30.8°0.1°
C6C1C2H2179.1°180.0°
C1C6C5C40.2°0.4°
C1C6C5H6180.0°179.9°
C1C6C5H5179.8°179.8°
C1C2C3H2180.0°180.0°
C1C2C3C40.8°0.3°
C1C2C3H3179.2°179.9°
C2C1C6C50.5°0.1°
C2C1C6H6179.5°180.0°
H1C1C2C3179.2°180.0°
H1C1C2H20.8°0.1°
H1C1C6C5179.5°180.0°
H1C1C6H60.5°0.1°
C2C3C4H3180.0°179.8°
C2C3C4C50.5°0.6°
C2C3C4C7179.6°180.0°
H2C2C3C4179.2°179.7°
H2C2C3H30.8°0.0°
C3C4C5C7179.9°179.4°
C3C4C5C60.1°0.6°
C3C4C5H5179.8°180.0°
C3C4C7O888.4°90.6°
C3C4C7H7151.5°29.4°
C3C4C7H7A31.6°149.4°
H3C3C4C5179.5°179.6°
H3C3C4C70.4°0.2°
C4C5C6H5180.0°179.4°
C4C5C6H6179.8°179.7°
C5C4C7O891.6°90.0°
C5C4C7H728.4°150.0°
C5C4C7H7A148.4°30.0°
C7C4C5C6179.9°180.0°
C7C4C5H50.1°0.6°
C4C7O8H7120.0°120.0°
C4C7O8H7A120.0°120.0°
C4C7H7H7A120.4°120.0°
C4C7O8C9131.6°180.0°
H5C5C6H60.2°0.3°
O8C7H7H7A120.4°120.0°
C7O8C9N10142.3°180.0°
C7O8C9O2138.3°0.0°
H7C7O8C911.6°60.0°
H7AC7O8C9108.4°60.0°
O8C9N10O21179.4°179.9°
O8C9N10C11179.8°180.0°
O8C9N10HN100.2°0.1°
C9N10C11HN10180.0°179.9°
C9N10C11P12152.2°95.0°
C9N10C11H1187.8°145.1°
C9N10C11H11A32.2°25.0°
O21C9N10C110.4°0.0°
O21C9N10HN10179.6°180.0°
N10C11P12H11120.0°120.0°
N10C11P12H11A120.0°120.1°
N10C11H11H11A119.5°120.1°
N10C11P12N13164.5°180.0°
N10C11P12O2246.3°60.0°
N10C11P12O2381.2°60.1°
HN10N10C11P1227.8°84.9°
HN10N10C11H1192.2°35.0°
HN10N10C11H11A147.8°155.1°
P12C11H11H11A119.5°120.0°
C11P12N13O22116.5°120.0°
C11P12N13O23116.1°120.0°
C11P12O22O23124.7°120.0°
C11P12N13C14131.5°175.1°
C11P12N13HN13108.5°60.9°
C11P12O23HO23124.1°60.0°
H11C11P12N1344.5°60.0°
H11C11P12O2273.7°60.0°
H11C11P12O23158.8°180.0°
H11AC11P12N1375.5°60.0°
H11AC11P12O22166.3°180.0°
H11AC11P12O2338.8°60.0°
N13P12O22O23123.2°120.0°
P12N13C14HN13120.0°123.9°
P12N13C14C20159.5°95.1°
P12N13C14C1580.8°145.0°
P12N13C14H1436.6°25.0°
N13P12O23HO23125.2°60.0°
O22P12N13C14111.9°64.8°
O22P12N13HN138.1°59.1°
O22P12O23HO230.0°180.0°
O23P12N13C1415.4°55.2°
O23P12N13HN13135.4°179.1°
N13C14C20C15122.8°120.0°
N13C14C20H14119.8°120.0°
N13C14C15H14119.8°120.0°
N13C14C15O24143.2°13.7°
N13C14C15N1635.4°166.3°
N13C14C20C21175.0°174.4°
N13C14C20H2055.0°54.4°
N13C14C20H20A65.0°65.6°
HN13N13C14C2039.5°28.9°
HN13N13C14C15159.2°91.1°
HN13N13C14H1483.4°148.9°
C20C14C15H14122.9°120.0°
C20C14C15O2499.6°106.3°
C20C14C15N1681.9°73.7°
C14C20C21H20120.0°120.0°
C14C20C21H20A120.0°120.0°
C14C20H20H20A118.6°120.0°
C14C20C21C22166.9°67.0°
C14C20C21C2369.5°173.0°
C14C20C21H2147.9°53.0°
C14C15O24N16178.5°180.0°
C14C15N16C17178.4°174.8°
C14C15N16HN161.6°5.1°
C15C14C20C2162.2°65.7°
C15C14C20H20177.8°174.4°
C15C14C20H20A57.8°54.3°
H14C14C15O2423.4°133.7°
H14C14C15N16155.2°46.3°
H14C14C20C2155.2°54.4°
H14C14C20H2064.8°65.6°
H14C14C20H20A175.2°174.4°
O24C15N16C170.2°5.2°
O24C15N16HN16179.8°174.9°
C15N16C17HN16180.0°179.9°
C15N16C17C25104.4°85.0°
C15N16C17C18132.3°155.0°
C15N16C17H1713.7°35.1°
N16C17C25C18122.9°120.0°
N16C17C25H17118.5°120.0°
N16C17C18H17118.6°119.9°
N16C17C18O1912.6°0.0°
N16C17C18O32166.0°180.0°
N16C17C25C2667.1°180.0°
N16C17C25C3159.0°60.0°
N16C17C25H25176.0°60.0°
HN16N16C17C2575.6°94.9°
HN16N16C17C1847.7°25.1°
HN16N16C17H17166.3°145.0°
C25C17C18H17118.1°120.0°
C25C17C18O19110.8°120.0°
C25C17C18O3270.7°60.0°
C17C25C26C31126.7°120.0°
C17C25C26H25116.2°120.1°
C17C25C31H25116.2°120.1°
C17C25C26H26180.0°60.0°
C17C25C26H26A60.0°180.0°
C17C25C26H26B60.0°60.0°
C17C25C31H31180.0°60.1°
C17C25C31H31A60.0°180.0°
C17C25C31H31B60.0°60.0°
C17C18O19O32178.5°180.0°
C18C17C25C26170.0°60.0°
C18C17C25C3163.9°180.0°
C18C17C25H2553.1°60.0°
C17C18O32HO32178.6°180.0°
H17C17C18O19131.2°120.0°
H17C17C18O3247.4°60.0°
H17C17C25C2651.5°60.0°
H17C17C25C31177.6°60.0°
H17C17C25H2565.4°180.0°
O19C18O32HO320.0°0.1°
C21C20H20H20A118.7°120.0°
C20C21C22C23124.8°120.0°
C20C21C22H21117.7°120.0°
C20C21C23H21117.5°120.0°
C20C21C22H22180.0°55.8°
C20C21C22H22A60.0°64.2°
C20C21C22H22B60.0°175.9°
C20C21C23H23180.0°60.0°
C20C21C23H23A60.0°180.0°
C20C21C23H23B60.0°60.0°
H20C20C21C2273.1°53.0°
H20C20C21C2350.5°67.0°
H20C20C21H21167.9°173.0°
H20AC20C21C2246.9°173.0°
H20AC20C21C23170.5°53.0°
H20AC20C21H2172.2°67.0°
C22C21C23H21119.0°120.1°
C21C22H22H22A120.0°120.0°
C21C22H22H22B120.0°120.0°
C21C22H22AH22B120.0°120.0°
C22C21C23H2356.6°180.0°
C22C21C23H23A176.6°60.0°
C22C21C23H23B63.4°59.9°
C23C21C22H2255.2°175.8°
C23C21C22H22A64.8°55.8°
C23C21C22H22B175.2°64.2°
C21C23H23H23A120.0°119.9°
C21C23H23H23B120.0°120.0°
C21C23H23AH23B120.0°120.0°
H21C21C22H2262.3°64.2°
H21C21C22H22A177.7°175.8°
H21C21C22H22B57.7°55.9°
H21C21C23H2362.5°59.9°
H21C21C23H23A57.6°60.0°
H21C21C23H23B177.5°180.0°
H22C22H22AH22B120.0°119.9°
H23C23H23AH23B120.0°120.1°
C26C25C31H25117.0°120.0°
C25C26H26H26A120.0°120.0°
C25C26H26H26B120.0°120.0°
C25C26H26AH26B120.0°120.0°
C26C25C31H3153.2°180.0°
C26C25C31H31A66.8°60.0°
C26C25C31H31B173.2°60.0°
C31C25C26H2653.3°60.0°
C31C25C26H26A173.3°60.0°
C31C25C26H26B66.7°180.0°
C25C31H31H31A120.0°120.0°
C25C31H31H31B120.0°120.1°
C25C31H31AH31B120.0°120.0°
H25C25C26H2663.8°180.0°
H25C25C26H26A56.2°59.9°
H25C25C26H26B176.2°60.0°
H25C25C31H3163.8°60.0°
H25C25C31H31A176.2°60.0°
H25C25C31H31B56.2°179.9°
H26C26H26AH26B120.0°120.0°
H31C31H31AH31B120.0°120.0°

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon