Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_000877

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.38Å1.39ÅAromatic
C1C6sing1.38Å1.39ÅAromatic
C2C3sing1.38Å1.39ÅAromatic
C3C4doub1.38Å1.39ÅAromatic
C4C5sing1.38Å1.39ÅAromatic
C4C7sing1.51Å1.52Å
C5C6doub1.38Å1.39ÅAromatic
C7S8sing1.81Å1.68Å
S8N9sing1.66Å1.62Å
S8O28doub1.42Å1.43Å
S8O29doub1.42Å1.44Å
N9C10sing1.47Å1.45Å
C10C11sing1.51Å1.51Å
C10C30sing1.53Å1.53Å
C11N12sing1.35Å1.33Å
C11O27doub1.21Å1.23Å
N12C13sing1.47Å1.47Å
N12C16sing1.47Å1.47Å
C13C14sing1.54Å1.52Å
C13C17sing1.51Å1.50Å
C14C15sing1.55Å1.52Å
C15C16sing1.55Å1.52Å
C17N18sing1.35Å1.33Å
C17O26doub1.21Å1.22Å
N18C19sing1.46Å1.46Å
C19C20sing1.51Å1.51Å
C20C21doub1.38Å1.38ÅAromatic
C20C25sing1.38Å1.39ÅAromatic
C21C22sing1.38Å1.39ÅAromatic
C22C23doub1.40Å1.39ÅAromatic
C23C24sing1.39Å1.38ÅAromatic
C23C37sing1.48Å1.50Å
C24C25doub1.38Å1.39ÅAromatic
C30C31sing1.53Å1.53Å
C31C32sing1.53Å1.53Å
C32N33sing1.46Å1.46Å
N33C34sing1.37Å1.33Å
C34N35doub1.30Å1.26Å
C34N36sing1.37Å1.33Å
C37N38doub1.30Å1.26Å
C37N39sing1.38Å1.34Å
C1H1sing1.08Å1.08Å
C2H2sing1.08Å1.08Å
C3H3sing1.08Å1.08Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
C7H7sing1.09Å1.10Å
C7H7Asing1.09Å1.10Å
N9HN9sing0.97Å1.00Å
C10H10sing1.09Å1.10Å
C13H13sing1.09Å1.10Å
C14H14sing1.09Å1.10Å
C14H14Asing1.09Å1.10Å
C15H15sing1.09Å1.10Å
C15H15Asing1.09Å1.10Å
C16H16sing1.09Å1.10Å
C16H16Asing1.09Å1.10Å
N18HN18sing0.97Å1.00Å
C19H19sing1.09Å1.10Å
C19H19Asing1.09Å1.10Å
C21H21sing1.08Å1.08Å
C22H22sing1.08Å1.08Å
C24H24sing1.08Å1.08Å
C25H25sing1.08Å1.08Å
C30H30sing1.09Å1.10Å
C30H30Asing1.09Å1.10Å
C31H31sing1.09Å1.10Å
C31H31Asing1.09Å1.10Å
C32H32sing1.09Å1.10Å
C32H32Asing1.09Å1.10Å
N33HN33sing0.97Å1.00Å
N35HN35sing0.97Å1.00Å
N36HN36sing0.97Å1.00Å
N36HN3Asing0.97Å1.00Å
N38HN38sing0.97Å1.00Å
N39HN39sing0.97Å1.00Å
N39HN3Bsing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C6119.9°119.9°
C1C2C3120.1°120.0°
C2C1H1120.0°120.1°
C1C2H2120.0°120.0°
C1C6C5119.9°120.0°
C6C1H1120.0°120.0°
C1C6H6120.1°119.9°
C2C3C4120.2°120.0°
C3C2H2120.0°120.0°
C2C3H3119.9°120.0°
C3C4C5119.5°120.0°
C3C4C7120.5°119.9°
C4C3H3119.9°120.0°
C5C4C7120.0°120.1°
C4C5C6120.3°120.0°
C4C5H5119.8°120.0°
C4C7S8113.5°109.5°
C4C7H7108.1°109.4°
C4C7H7A108.2°109.5°
C6C5H5119.8°120.0°
C5C6H6120.0°120.0°
C7S8N9108.1°104.5°
C7S8O28106.4°110.5°
C7S8O29112.0°110.5°
S8C7H7108.2°109.5°
S8C7H7A108.1°109.5°
N9S8O28105.7°104.3°
N9S8O29110.3°104.2°
S8N9C10123.5°120.0°
S8N9HN9105.1°120.0°
O28S8O29113.9°121.1°
N9C10C11110.8°109.5°
N9C10C30110.3°109.4°
C10N9HN9105.0°120.0°
N9C10H10107.4°109.4°
C11C10C30107.4°109.5°
C10C11N12119.2°120.1°
C10C11O27119.3°120.0°
C11C10H10110.2°109.5°
C10C30C31114.9°109.4°
C30C10H10110.8°109.5°
C10C30H30107.7°109.4°
C10C30H30A107.7°109.5°
N12C11O27121.6°120.0°
C11N12C13120.0°125.7°
C11N12C16127.7°125.6°
C13N12C16112.2°108.7°
N12C13C14105.6°107.3°
N12C13C17109.5°109.9°
N12C13H13111.8°109.9°
N12C16C15104.2°104.7°
N12C16H16111.2°110.4°
N12C16H16A111.3°110.4°
C14C13C17109.1°109.9°
C13C14C15105.0°102.9°
C14C13H13112.2°109.9°
C13C14H14111.0°110.7°
C13C14H14A111.0°110.8°
C13C17N18117.1°120.0°
C13C17O26121.0°120.0°
C17C13H13108.4°110.0°
C14C15C16106.6°101.5°
C15C14H14111.0°110.7°
C15C14H14A111.0°110.7°
C14C15H15110.4°111.0°
C14C15H15A110.4°110.9°
C16C15H15110.4°111.2°
C16C15H15A110.5°110.9°
C15C16H16111.3°110.5°
C15C16H16A111.2°110.3°
N18C17O26121.9°120.0°
C17N18C19124.6°120.0°
C17N18HN18117.7°120.0°
N18C19C20107.9°109.5°
C19N18HN18117.7°120.0°
N18C19H19110.0°109.5°
N18C19H19A110.0°109.5°
C19C20C21120.3°119.8°
C19C20C25120.9°119.9°
C20C19H19110.0°109.5°
C20C19H19A110.0°109.5°
C21C20C25118.8°120.3°
C20C21C22121.3°120.1°
C20C21H21119.4°120.0°
C20C25C24120.1°120.1°
C20C25H25120.0°119.9°
C21C22C23119.7°119.8°
C22C21H21119.3°119.9°
C21C22H22120.1°120.1°
C22C23C24119.2°119.7°
C22C23C37120.8°120.1°
C23C22H22120.2°120.0°
C24C23C37120.0°120.2°
C23C24C25120.9°119.9°
C23C24H24119.5°120.0°
C23C37N38119.9°120.0°
C23C37N39120.6°119.9°
C25C24H24119.6°120.1°
C24C25H25119.9°119.9°
C30C31C32108.9°109.4°
C31C30H30107.7°109.5°
C31C30H30A107.7°109.5°
C30C31H31109.7°109.5°
C30C31H31A109.7°109.5°
C31C32N33106.7°109.5°
C32C31H31109.7°109.5°
C32C31H31A109.6°109.4°
C31C32H32110.4°109.5°
C31C32H32A110.4°109.5°
C32N33C34126.3°120.0°
N33C32H32110.4°109.5°
N33C32H32A110.4°109.5°
C32N33HN33116.8°120.0°
N33C34N35119.8°120.0°
N33C34N36120.0°120.0°
C34N33HN33116.9°119.9°
N35C34N36120.1°120.0°
C34N35HN35112.0°120.0°
C34N36HN36120.0°119.9°
C34N36HN3A120.0°120.1°
N38C37N39119.5°120.0°
C37N38HN38112.0°120.0°
C37N39HN39120.0°120.0°
C37N39HN3B120.0°120.0°
H7C7H7A110.8°109.5°
H14C14H14A107.9°110.7°
H15C15H15A108.5°110.9°
H16C16H16A107.7°110.4°
H19C19H19A108.9°109.5°
H30C30H30A111.2°109.5°
H31C31H31A109.3°109.5°
H32C32H32A108.5°109.4°
HN36N36HN3A120.0°120.0°
HN39N39HN3B120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C6H1180.0°179.7°
C1C2C3H2180.0°180.0°
C1C2C3C40.3°0.0°
C2C1C6C50.1°0.0°
C1C2C3H3179.7°179.9°
C2C1C6H6179.9°180.0°
C6C1C2C30.0°0.0°
C1C6C5C40.6°0.1°
C1C6C5H6180.0°180.0°
C6C1C2H2180.0°180.0°
C1C6C5H5179.4°180.0°
C2C3C4H3180.0°179.9°
C2C3C4C50.7°0.1°
C2C3C4C7179.9°179.9°
C3C2C1H1180.0°179.7°
C3C4C5C7179.2°180.0°
C3C4C5C60.9°0.1°
C3C4C7S881.4°90.0°
C4C3C2H2179.7°180.0°
C3C4C5H5179.1°180.0°
C3C4C7H738.5°150.1°
C3C4C7H7A158.6°30.0°
C4C5C6H5180.0°179.9°
C5C4C7S899.4°90.0°
C5C4C3H3179.2°179.9°
C4C5C6H6179.4°180.0°
C5C4C7H7140.6°29.9°
C5C4C7H7A20.6°150.0°
C7C4C5C6179.9°179.9°
C4C7S8H7120.0°120.0°
C4C7S8H7A120.0°120.0°
C4C7S8N9172.2°175.0°
C4C7S8O2859.1°73.4°
C4C7S8O2966.0°63.4°
C7C4C3H30.1°0.1°
C7C4C5H50.1°0.0°
C4C7H7H7A118.4°120.0°
C5C6C1H1179.9°179.7°
C7S8N9O28113.6°116.1°
C7S8N9O29122.8°116.0°
C7S8O28O29123.9°131.5°
C7S8N9C1080.0°63.3°
S8C7H7H7A118.3°120.0°
C7S8N9HN940.0°116.7°
N9S8O28O29121.3°116.7°
S8N9C10HN9120.0°180.0°
S8N9C10C1173.5°96.2°
S8N9C10C30167.7°143.9°
N9S8C7H767.8°55.0°
N9S8C7H7A52.2°65.0°
S8N9C10H1046.9°23.9°
O28S8N9C10166.4°52.8°
O28S8C7H7179.0°166.7°
O28S8C7H7A61.0°46.7°
O28S8N9HN973.6°127.2°
O29S8N9C1042.9°179.3°
O29S8C7H754.0°56.5°
O29S8C7H7A174.0°176.6°
O29S8N9HN9162.9°0.7°
N9C10C11C30120.5°120.0°
N9C10C11H10118.8°120.0°
N9C10C30H10118.8°120.0°
N9C10C11N12145.2°180.0°
N9C10C11O2735.4°0.1°
N9C10C30C3142.6°64.2°
N9C10C30H30162.6°175.8°
N9C10C30H30A77.4°55.8°
C11C10C30H10120.4°120.0°
C10C11N12O27179.5°179.9°
C10C11N12C13179.3°180.0°
C10C11N12C160.2°0.3°
C11C10C30C31163.4°175.8°
C11C10N9HN946.5°83.8°
C11C10C30H3076.6°55.8°
C11C10C30H30A43.4°64.2°
C30C10C11N1294.4°60.1°
C30C10C11O2785.1°120.0°
C10C30C31H30120.0°119.9°
C10C30C31H30A120.0°120.0°
C10C30C31C32175.7°175.7°
C30C10N9HN972.3°36.2°
C10C30H30H30A117.8°120.0°
C10C30C31H3164.3°55.7°
C10C30C31H31A55.7°64.4°
C11N12C13C16179.2°179.7°
C11N12C13C14173.3°179.0°
C11N12C13C1755.9°59.6°
C11N12C16C15170.9°155.8°
N12C11C10H1026.4°60.0°
C11N12C13H1364.4°61.6°
C11N12C16H1650.9°85.2°
C11N12C16H16A69.1°37.1°
O27C11N12C131.2°0.1°
O27C11N12C16179.7°179.7°
O27C11C10H10154.1°119.9°
N12C13C14C17117.7°119.4°
N12C13C14H13122.1°119.4°
N12C13C17H13122.3°121.1°
N12C13C14C1519.4°22.2°
C13N12C16C159.9°24.5°
N12C13C17N18135.5°180.0°
N12C13C17O2642.6°0.0°
N12C13C14H14100.6°140.6°
N12C13C14H14A139.4°96.2°
C13N12C16H16129.9°94.5°
C13N12C16H16A110.0°143.2°
C16N12C13C146.0°1.3°
C16N12C13C17123.4°120.7°
N12C16C15C1421.9°37.3°
N12C16C15H16120.0°118.8°
N12C16C15H16A120.0°118.8°
C16N12C13H13116.4°118.1°
N12C16C15H15141.9°80.8°
N12C16C15H15A98.0°155.3°
N12C16H16H16A122.1°122.3°
C14C13C17H13122.5°121.1°
C13C14C15H14120.0°118.3°
C13C14C15H14A120.0°118.4°
C13C14C15C1625.7°35.7°
C14C13C17N18109.3°62.2°
C14C13C17O2672.5°117.8°
C13C14H14H14A121.8°123.2°
C13C14C15H15145.7°82.6°
C13C14C15H15A94.3°153.6°
C17C13C14C15137.1°97.2°
C13C17N18O26178.1°180.0°
C13C17N18C19179.2°180.0°
C17C13C14H1417.0°21.2°
C17C13C14H14A102.9°144.4°
C13C17N18HN180.8°0.0°
C14C15C16H15120.0°118.1°
C14C15C16H15A120.0°117.9°
C15C14C13H13102.7°141.6°
C15C14H14H14A121.8°123.3°
C14C15H15H15A121.2°123.8°
C14C15C16H16141.9°81.5°
C14C15C16H16A98.1°156.1°
C16C15C14H1494.2°154.0°
C16C15C14H14A145.8°82.7°
C16C15H15H15A121.2°124.0°
C15C16H16H16A122.1°122.3°
C17N18C19HN18180.0°180.0°
C17N18C19C20109.0°180.0°
N18C17C13H1313.2°58.9°
C17N18C19H19131.0°60.0°
C17N18C19H19A11.0°60.0°
O26C17N18C191.1°0.0°
O26C17C13H13164.9°121.1°
O26C17N18HN18178.9°180.0°
N18C19C20H19120.0°120.0°
N18C19C20H19A120.0°120.0°
N18C19C20C2195.0°90.0°
N18C19C20C2583.3°90.2°
N18C19H19H19A120.6°120.0°
C19C20C21C25178.3°179.8°
C19C20C21C22179.3°180.0°
C19C20C25C24179.2°179.7°
C20C19N18HN1871.0°0.0°
C20C19H19H19A120.6°120.0°
C19C20C21H210.7°0.0°
C19C20C25H250.8°0.1°
C20C21C22H21180.0°179.9°
C20C21C22C230.5°0.0°
C21C20C25C240.9°0.5°
C21C20C19H19145.0°30.0°
C21C20C19H19A25.0°150.0°
C20C21C22H22179.4°179.9°
C21C20C25H25179.1°179.7°
C25C20C21C221.0°0.3°
C20C25C24C230.4°0.4°
C20C25C24H25180.0°179.8°
C25C20C19H1936.7°149.8°
C25C20C19H19A156.7°29.8°
C25C20C21H21179.0°179.8°
C20C25C24H24179.6°179.7°
C21C22C23H22180.0°179.9°
C21C22C23C240.0°0.1°
C21C22C23C37179.8°180.0°
C22C23C24C37179.9°179.9°
C22C23C24C250.1°0.1°
C22C23C37N38178.0°0.0°
C22C23C37N393.0°179.9°
C23C22C21H21179.5°179.9°
C22C23C24H24179.9°180.0°
C23C24C25H24180.0°179.9°
C24C23C37N382.1°180.0°
C24C23C37N39176.9°0.0°
C24C23C22H22180.0°180.0°
C23C24C25H25179.6°179.8°
C37C23C24C25179.9°179.8°
C23C37N38N39179.0°180.0°
C37C23C22H220.2°0.1°
C37C23C24H240.1°0.1°
C23C37N38HN38179.0°180.0°
C23C37N39HN39179.0°0.0°
C23C37N39HN3B1.0°180.0°
C30C31C32H31120.0°120.0°
C30C31C32H31A120.0°120.0°
C30C31C32N33176.3°180.0°
C31C30C10H1076.2°55.7°
C31C30H30H30A117.8°120.0°
C30C31H31H31A120.2°120.1°
C30C31C32H3263.7°60.0°
C30C31C32H32A56.3°60.0°
C31C32N33H32120.0°120.1°
C31C32N33H32A120.0°120.0°
C31C32N33C3493.1°180.0°
C32C31C30H3055.7°64.4°
C32C31C30H30A64.3°55.6°
C32C31H31H31A120.2°120.0°
C31C32H32H32A121.2°120.0°
C31C32N33HN3386.9°0.1°
C32N33C34HN33180.0°179.9°
C32N33C34N351.6°0.0°
C32N33C34N36179.4°180.0°
N33C32C31H3156.3°60.0°
N33C32C31H31A63.7°60.0°
N33C32H32H32A121.1°120.0°
N33C34N35N36179.0°180.0°
C34N33C32H3226.9°60.0°
C34N33C32H32A146.9°59.9°
N33C34N35HN35179.0°180.0°
N33C34N36HN36179.0°0.0°
N33C34N36HN3A1.0°180.0°
N35C34N33HN33178.4°179.9°
N35C34N36HN360.0°180.0°
N35C34N36HN3A180.0°0.0°
N36C34N33HN330.6°0.1°
N36C34N35HN350.0°0.0°
C34N36HN36HN3A180.0°180.0°
N38C37N39HN390.0°180.0°
N38C37N39HN3B180.0°0.0°
N39C37N38HN380.0°0.0°
C37N39HN39HN3B180.0°180.0°
H1C1C2H20.0°0.3°
H1C1C6H60.1°0.3°
H2C2C3H30.3°0.1°
H5C5C6H60.6°0.0°
HN9N9C10H10167.0°156.1°
H10C10C30H3043.8°64.2°
H10C10C30H30A163.8°175.8°
H13C13C14H14137.3°100.0°
H13C13C14H14A17.3°23.2°
H14C14C15H1525.7°35.8°
H14C14C15H15A145.8°88.1°
H14AC14C15H1594.3°159.0°
H14AC14C15H15A25.8°35.2°
H15C15C16H1698.1°160.4°
H15C15C16H16A21.9°38.0°
H15AC15C16H1622.0°36.4°
H15AC15C16H16A142.0°86.0°
HN18N18C19H1949.0°120.0°
HN18N18C19H19A169.0°120.0°
H21C21C22H220.5°0.0°
H24C24C25H250.4°0.1°
H30C30C31H31175.7°175.6°
H30C30C31H31A64.3°55.6°
H30AC30C31H3155.7°64.3°
H30AC30C31H31A175.7°175.6°
H31C31C32H32176.3°179.9°
H31C31C32H32A63.7°60.0°
H31AC31C32H3256.3°60.0°
H31AC31C32H32A176.3°180.0°
H32C32N33HN33153.1°120.1°
H32AC32N33HN3333.1°120.0°

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon