PRD_000800
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O4E | C10 | doub | 1.21Å | 1.25Å | |
C10 | C9 | sing | 1.51Å | 1.51Å | |
C10 | O4 | sing | 1.34Å | 1.25Å | |
C9 | C8 | sing | 1.53Å | 1.52Å | |
C12 | C11 | sing | 1.51Å | 1.50Å | |
C12 | C13 | sing | 1.53Å | 1.51Å | |
C11 | O2 | doub | 1.21Å | 1.23Å | |
C11 | N2 | sing | 1.35Å | 1.33Å | |
C13 | C27 | sing | 1.51Å | 1.50Å | |
C8 | C7 | sing | 1.53Å | 1.52Å | |
N2 | C7 | sing | 1.47Å | 1.45Å | |
C14 | C27 | doub | 1.35Å | 1.40Å | Aromatic |
C14 | C16 | sing | 1.42Å | 1.42Å | Aromatic |
C27 | O5 | sing | 1.34Å | 1.36Å | Aromatic |
C22 | C23 | doub | 1.38Å | 1.39Å | Aromatic |
C22 | C21 | sing | 1.39Å | 1.39Å | Aromatic |
C7 | C6 | sing | 1.51Å | 1.49Å | |
C23 | C24 | sing | 1.38Å | 1.40Å | Aromatic |
C16 | C21 | sing | 1.48Å | 1.49Å | |
C16 | N3 | doub | 1.31Å | 1.35Å | Aromatic |
O5 | N3 | sing | 1.21Å | 1.42Å | Aromatic |
C21 | C26 | doub | 1.39Å | 1.40Å | Aromatic |
C6 | O1 | doub | 1.21Å | 1.23Å | |
C6 | N1 | sing | 1.35Å | 1.33Å | |
C24 | C25 | doub | 1.38Å | 1.39Å | Aromatic |
C26 | C25 | sing | 1.38Å | 1.39Å | Aromatic |
N9 | C1 | sing | 1.35Å | 1.26Å | |
N1 | C2 | sing | 1.47Å | 1.45Å | |
C1 | C2 | sing | 1.51Å | 1.51Å | |
C1 | O9 | doub | 1.21Å | 1.22Å | |
C2 | C3 | sing | 1.53Å | 1.52Å | |
C3 | C4 | sing | 1.53Å | 1.52Å | |
C4 | C5 | sing | 1.51Å | 1.51Å | |
O8 | C5 | doub | 1.21Å | 1.26Å | |
C5 | O8E | sing | 1.34Å | 1.25Å | |
N1 | H1 | sing | 0.97Å | 1.00Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
N2 | H3 | sing | 0.97Å | 1.00Å | |
C3 | H4 | sing | 1.09Å | 1.10Å | |
C3 | H5 | sing | 1.09Å | 1.10Å | |
C4 | H6 | sing | 1.09Å | 1.10Å | |
C4 | H7 | sing | 1.09Å | 1.10Å | |
O4 | H8 | sing | 0.97Å | 0.95Å | |
C7 | H9 | sing | 1.09Å | 1.10Å | |
C8 | H10 | sing | 1.09Å | 1.10Å | |
C8 | H11 | sing | 1.09Å | 1.10Å | |
C9 | H12 | sing | 1.09Å | 1.10Å | |
C9 | H13 | sing | 1.09Å | 1.10Å | |
N9 | H14 | sing | 0.97Å | 1.00Å | |
N9 | H15 | sing | 0.97Å | 1.00Å | |
C12 | H16 | sing | 1.09Å | 1.10Å | |
C12 | H17 | sing | 1.09Å | 1.10Å | |
C13 | H18 | sing | 1.09Å | 1.10Å | |
C13 | H19 | sing | 1.09Å | 1.10Å | |
C14 | H20 | sing | 1.08Å | 1.08Å | |
C22 | H21 | sing | 1.08Å | 1.08Å | |
C23 | H22 | sing | 1.08Å | 1.08Å | |
C24 | H23 | sing | 1.08Å | 1.08Å | |
C25 | H24 | sing | 1.08Å | 1.08Å | |
C26 | H25 | sing | 1.08Å | 1.08Å | |
O8E | H26 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O4E | C10 | C9 | 118.6° | 120.0° |
O4E | C10 | O4 | 123.3° | 120.0° |
C9 | C10 | O4 | 118.1° | 120.0° |
C10 | C9 | C8 | 104.6° | 109.5° |
C10 | C9 | H12 | 110.7° | 109.5° |
C10 | C9 | H13 | 110.7° | 109.5° |
C10 | O4 | H8 | 109.5° | 117.0° |
C9 | C8 | C7 | 115.4° | 109.4° |
C9 | C8 | H10 | 108.0° | 109.5° |
C9 | C8 | H11 | 107.9° | 109.5° |
C8 | C9 | H12 | 110.7° | 109.5° |
C8 | C9 | H13 | 110.6° | 109.5° |
C11 | C12 | C13 | 104.3° | 109.5° |
C12 | C11 | O2 | 120.7° | 120.0° |
C12 | C11 | N2 | 113.9° | 120.0° |
C11 | C12 | H16 | 110.8° | 109.5° |
C11 | C12 | H17 | 110.7° | 109.5° |
C12 | C13 | C27 | 114.4° | 109.5° |
C13 | C12 | H16 | 110.7° | 109.5° |
C13 | C12 | H17 | 110.8° | 109.4° |
C12 | C13 | H18 | 108.2° | 109.5° |
C12 | C13 | H19 | 108.3° | 109.4° |
O2 | C11 | N2 | 125.4° | 120.0° |
C11 | N2 | C7 | 122.1° | 120.0° |
C11 | N2 | H3 | 119.0° | 120.0° |
C13 | C27 | C14 | 132.4° | 126.7° |
C13 | C27 | O5 | 122.6° | 126.6° |
C27 | C13 | H18 | 108.2° | 109.5° |
C27 | C13 | H19 | 108.2° | 109.5° |
C8 | C7 | N2 | 105.8° | 109.5° |
C8 | C7 | C6 | 102.9° | 109.4° |
C8 | C7 | H9 | 112.4° | 109.5° |
C7 | C8 | H10 | 108.0° | 109.5° |
C7 | C8 | H11 | 108.0° | 109.5° |
N2 | C7 | C6 | 108.6° | 109.5° |
C7 | N2 | H3 | 118.9° | 120.0° |
N2 | C7 | H9 | 113.5° | 109.5° |
C27 | C14 | C16 | 107.8° | 103.9° |
C14 | C27 | O5 | 105.0° | 106.7° |
C27 | C14 | H20 | 126.1° | 128.0° |
C14 | C16 | C21 | 129.3° | 126.9° |
C14 | C16 | N3 | 110.0° | 106.2° |
C16 | C14 | H20 | 126.1° | 128.1° |
C27 | O5 | N3 | 112.6° | 111.8° |
C23 | C22 | C21 | 119.8° | 119.9° |
C22 | C23 | C24 | 119.2° | 120.1° |
C23 | C22 | H21 | 120.1° | 120.1° |
C22 | C23 | H22 | 120.4° | 119.9° |
C22 | C21 | C16 | 121.0° | 120.2° |
C22 | C21 | C26 | 120.8° | 119.7° |
C21 | C22 | H21 | 120.1° | 120.0° |
C7 | C6 | O1 | 120.4° | 120.0° |
C7 | C6 | N1 | 116.5° | 120.0° |
C6 | C7 | H9 | 112.9° | 109.5° |
C23 | C24 | C25 | 121.2° | 120.3° |
C24 | C23 | H22 | 120.4° | 119.9° |
C23 | C24 | H23 | 119.4° | 119.9° |
C21 | C16 | N3 | 120.7° | 127.0° |
C16 | C21 | C26 | 118.2° | 120.1° |
C16 | N3 | O5 | 104.6° | 111.4° |
C21 | C26 | C25 | 119.7° | 119.9° |
C21 | C26 | H25 | 120.2° | 120.1° |
O1 | C6 | N1 | 122.9° | 120.0° |
C6 | N1 | C2 | 118.9° | 119.9° |
C6 | N1 | H1 | 120.6° | 120.0° |
C24 | C25 | C26 | 119.3° | 120.1° |
C25 | C24 | H23 | 119.4° | 119.8° |
C24 | C25 | H24 | 120.4° | 120.0° |
C26 | C25 | H24 | 120.4° | 119.9° |
C25 | C26 | H25 | 120.2° | 120.1° |
N9 | C1 | C2 | 116.9° | 120.0° |
N9 | C1 | O9 | 122.1° | 120.0° |
C1 | N9 | H14 | 120.0° | 120.0° |
C1 | N9 | H15 | 120.0° | 119.9° |
N1 | C2 | C1 | 110.1° | 109.5° |
N1 | C2 | C3 | 104.4° | 109.4° |
C2 | N1 | H1 | 120.5° | 120.0° |
N1 | C2 | H2 | 111.6° | 109.5° |
C2 | C1 | O9 | 121.1° | 120.0° |
C1 | C2 | C3 | 109.3° | 109.5° |
C1 | C2 | H2 | 110.7° | 109.5° |
C2 | C3 | C4 | 110.4° | 109.5° |
C3 | C2 | H2 | 110.5° | 109.5° |
C2 | C3 | H4 | 109.2° | 109.4° |
C2 | C3 | H5 | 109.2° | 109.5° |
C3 | C4 | C5 | 108.9° | 109.5° |
C4 | C3 | H4 | 109.2° | 109.5° |
C4 | C3 | H5 | 109.2° | 109.5° |
C3 | C4 | H6 | 109.6° | 109.5° |
C3 | C4 | H7 | 109.6° | 109.5° |
C4 | C5 | O8 | 119.4° | 120.0° |
C4 | C5 | O8E | 117.7° | 120.0° |
C5 | C4 | H6 | 109.6° | 109.5° |
C5 | C4 | H7 | 109.6° | 109.4° |
O8 | C5 | O8E | 122.9° | 120.0° |
C5 | O8E | H26 | 109.5° | 117.0° |
H4 | C3 | H5 | 109.5° | 109.5° |
H6 | C4 | H7 | 109.4° | 109.5° |
H10 | C8 | H11 | 109.5° | 109.5° |
H12 | C9 | H13 | 109.5° | 109.4° |
H14 | N9 | H15 | 120.0° | 120.0° |
H16 | C12 | H17 | 109.5° | 109.5° |
H18 | C13 | H19 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O4E | C10 | C9 | O4 | 178.7° | 180.0° |
O4E | C10 | C9 | C8 | 103.3° | 0.0° |
O4E | C10 | O4 | H8 | 0.0° | 0.0° |
O4E | C10 | C9 | H12 | 15.9° | 120.0° |
O4E | C10 | C9 | H13 | 137.5° | 120.0° |
C10 | C9 | C8 | H12 | 119.2° | 120.0° |
C10 | C9 | C8 | H13 | 119.2° | 120.0° |
C10 | C9 | C8 | C7 | 171.7° | 180.0° |
C9 | C10 | O4 | H8 | 178.7° | 180.0° |
C10 | C9 | C8 | H10 | 50.8° | 60.0° |
C10 | C9 | C8 | H11 | 67.4° | 60.0° |
C10 | C9 | H12 | H13 | 122.3° | 120.0° |
O4 | C10 | C9 | C8 | 75.5° | 180.0° |
O4 | C10 | C9 | H12 | 165.3° | 60.0° |
O4 | C10 | C9 | H13 | 43.8° | 60.0° |
C9 | C8 | C7 | H10 | 120.8° | 120.0° |
C9 | C8 | C7 | H11 | 120.8° | 120.0° |
C9 | C8 | C7 | N2 | 71.7° | 65.0° |
C9 | C8 | C7 | C6 | 174.4° | 175.0° |
C9 | C8 | C7 | H9 | 52.7° | 55.0° |
C9 | C8 | H10 | H11 | 117.3° | 120.0° |
C8 | C9 | H12 | H13 | 122.2° | 120.0° |
C11 | C12 | C13 | H16 | 119.2° | 120.1° |
C11 | C12 | C13 | H17 | 119.2° | 120.0° |
C12 | C11 | O2 | N2 | 178.3° | 180.0° |
C11 | C12 | C13 | C27 | 113.7° | 180.0° |
C12 | C11 | N2 | C7 | 179.1° | 180.0° |
C12 | C11 | N2 | H3 | 1.0° | 0.1° |
C11 | C12 | H16 | H17 | 122.4° | 120.1° |
C11 | C12 | C13 | H18 | 125.6° | 59.9° |
C11 | C12 | C13 | H19 | 7.0° | 60.0° |
C13 | C12 | C11 | O2 | 53.5° | 0.0° |
C13 | C12 | C11 | N2 | 124.9° | 179.9° |
C12 | C13 | C27 | H18 | 120.7° | 120.0° |
C12 | C13 | C27 | H19 | 120.7° | 119.9° |
C12 | C13 | C27 | C14 | 13.3° | 90.1° |
C12 | C13 | C27 | O5 | 167.6° | 90.0° |
C13 | C12 | H16 | H17 | 122.4° | 119.9° |
C12 | C13 | H18 | H19 | 117.8° | 119.9° |
O2 | C11 | N2 | C7 | 0.7° | 0.1° |
O2 | C11 | N2 | H3 | 179.3° | 180.0° |
O2 | C11 | C12 | H16 | 172.7° | 120.0° |
O2 | C11 | C12 | H17 | 65.6° | 119.9° |
C11 | N2 | C7 | C8 | 119.3° | 85.1° |
C11 | N2 | C7 | H3 | 180.0° | 179.9° |
C11 | N2 | C7 | C6 | 130.8° | 155.0° |
C11 | N2 | C7 | H9 | 4.4° | 34.9° |
N2 | C11 | C12 | H16 | 5.8° | 60.0° |
N2 | C11 | C12 | H17 | 115.9° | 60.0° |
C13 | C27 | C14 | O5 | 179.2° | 180.0° |
C13 | C27 | C14 | C16 | 179.0° | 180.0° |
C13 | C27 | O5 | N3 | 178.9° | 180.0° |
C27 | C13 | C12 | H16 | 5.5° | 59.9° |
C27 | C13 | C12 | H17 | 127.1° | 60.0° |
C27 | C13 | H18 | H19 | 117.7° | 120.0° |
C13 | C27 | C14 | H20 | 1.0° | 0.0° |
C8 | C7 | N2 | C6 | 109.9° | 119.9° |
C8 | C7 | N2 | H9 | 123.7° | 120.0° |
C8 | C7 | C6 | H9 | 121.4° | 120.0° |
C8 | C7 | C6 | O1 | 92.3° | 120.0° |
C8 | C7 | C6 | N1 | 85.1° | 60.1° |
C8 | C7 | N2 | H3 | 60.7° | 95.0° |
C7 | C8 | H10 | H11 | 117.4° | 120.0° |
C7 | C8 | C9 | H12 | 69.1° | 60.0° |
C7 | C8 | C9 | H13 | 52.5° | 60.0° |
N2 | C7 | C6 | H9 | 126.8° | 120.0° |
N2 | C7 | C6 | O1 | 19.5° | 0.1° |
N2 | C7 | C6 | N1 | 163.1° | 180.0° |
N2 | C7 | C8 | H10 | 167.4° | 54.9° |
N2 | C7 | C8 | H11 | 49.1° | 175.0° |
C27 | C14 | C16 | H20 | 180.0° | 179.9° |
C27 | C14 | C16 | C21 | 179.4° | 180.0° |
C27 | C14 | C16 | N3 | 0.0° | 0.0° |
C14 | C27 | O5 | N3 | 0.4° | 0.0° |
C14 | C27 | C13 | H18 | 107.4° | 30.0° |
C14 | C27 | C13 | H19 | 134.0° | 150.0° |
C16 | C14 | C27 | O5 | 0.2° | 0.0° |
C14 | C16 | C21 | C22 | 13.9° | 0.3° |
C14 | C16 | C21 | N3 | 179.3° | 180.0° |
C14 | C16 | N3 | O5 | 0.3° | 0.0° |
C14 | C16 | C21 | C26 | 166.8° | 179.9° |
C27 | O5 | N3 | C16 | 0.4° | 0.0° |
O5 | C27 | C13 | H18 | 71.7° | 150.0° |
O5 | C27 | C13 | H19 | 46.8° | 30.0° |
O5 | C27 | C14 | H20 | 179.8° | 180.0° |
C23 | C22 | C21 | H21 | 180.0° | 179.9° |
C22 | C23 | C24 | H22 | 180.0° | 180.0° |
C23 | C22 | C21 | C16 | 179.8° | 180.0° |
C23 | C22 | C21 | C26 | 0.5° | 0.3° |
C22 | C23 | C24 | C25 | 0.2° | 0.1° |
C22 | C23 | C24 | H23 | 179.9° | 180.0° |
C21 | C22 | C23 | C24 | 0.4° | 0.1° |
C22 | C21 | C16 | C26 | 179.3° | 179.7° |
C22 | C21 | C16 | N3 | 165.4° | 179.7° |
C22 | C21 | C26 | C25 | 0.4° | 0.6° |
C21 | C22 | C23 | H22 | 179.6° | 179.9° |
C22 | C21 | C26 | H25 | 179.6° | 179.7° |
C7 | C6 | O1 | N1 | 177.2° | 179.9° |
C7 | C6 | N1 | C2 | 178.1° | 180.0° |
C7 | C6 | N1 | H1 | 1.9° | 0.0° |
C6 | C7 | N2 | H3 | 49.2° | 24.9° |
C6 | C7 | C8 | H10 | 53.5° | 65.0° |
C6 | C7 | C8 | H11 | 64.8° | 55.1° |
C23 | C24 | C25 | H23 | 180.0° | 180.0° |
C23 | C24 | C25 | C26 | 0.0° | 0.3° |
C24 | C23 | C22 | H21 | 179.5° | 180.0° |
C23 | C24 | C25 | H24 | 180.0° | 180.0° |
C21 | C16 | N3 | O5 | 179.7° | 180.0° |
C16 | C21 | C26 | C25 | 179.6° | 179.7° |
C21 | C16 | C14 | H20 | 0.6° | 0.0° |
C16 | C21 | C22 | H21 | 0.2° | 0.1° |
C16 | C21 | C26 | H25 | 0.4° | 0.0° |
N3 | C16 | C21 | C26 | 13.8° | 0.0° |
N3 | C16 | C14 | H20 | 180.0° | 180.0° |
C21 | C26 | C25 | C24 | 0.1° | 0.6° |
C21 | C26 | C25 | H25 | 180.0° | 179.7° |
C26 | C21 | C22 | H21 | 179.4° | 179.8° |
C21 | C26 | C25 | H24 | 179.9° | 179.7° |
O1 | C6 | N1 | C2 | 0.8° | 0.1° |
O1 | C6 | N1 | H1 | 179.2° | 180.0° |
O1 | C6 | C7 | H9 | 146.3° | 119.9° |
C6 | N1 | C2 | H1 | 180.0° | 180.0° |
C6 | N1 | C2 | C1 | 73.8° | 85.0° |
C6 | N1 | C2 | C3 | 168.9° | 155.0° |
C6 | N1 | C2 | H2 | 49.5° | 35.0° |
N1 | C6 | C7 | H9 | 36.3° | 60.0° |
C24 | C25 | C26 | H24 | 180.0° | 179.7° |
C25 | C24 | C23 | H22 | 179.8° | 180.0° |
C24 | C25 | C26 | H25 | 179.9° | 179.7° |
C26 | C25 | C24 | H23 | 180.0° | 179.7° |
N9 | C1 | C2 | N1 | 28.3° | 179.9° |
N9 | C1 | C2 | O9 | 179.8° | 180.0° |
N9 | C1 | C2 | C3 | 85.9° | 60.0° |
N9 | C1 | C2 | H2 | 152.1° | 60.0° |
C1 | N9 | H14 | H15 | 180.0° | 180.0° |
N1 | C2 | C1 | C3 | 114.2° | 120.0° |
N1 | C2 | C1 | H2 | 123.8° | 120.0° |
N1 | C2 | C1 | O9 | 151.9° | 0.0° |
N1 | C2 | C3 | H2 | 120.1° | 120.0° |
N1 | C2 | C3 | C4 | 97.4° | 65.0° |
N1 | C2 | C3 | H4 | 22.8° | 55.0° |
N1 | C2 | C3 | H5 | 142.5° | 175.0° |
C1 | C2 | C3 | H2 | 122.1° | 120.0° |
C1 | C2 | C3 | C4 | 144.8° | 175.0° |
C1 | C2 | N1 | H1 | 106.2° | 95.0° |
C1 | C2 | C3 | H4 | 95.1° | 65.0° |
C1 | C2 | C3 | H5 | 24.7° | 55.0° |
C2 | C1 | N9 | H14 | 179.8° | 0.0° |
C2 | C1 | N9 | H15 | 0.2° | 180.0° |
O9 | C1 | C2 | C3 | 93.9° | 120.0° |
O9 | C1 | C2 | H2 | 28.1° | 120.0° |
O9 | C1 | N9 | H14 | 0.0° | 180.0° |
O9 | C1 | N9 | H15 | 180.0° | 0.0° |
C2 | C3 | C4 | H4 | 120.1° | 120.0° |
C2 | C3 | C4 | H5 | 120.1° | 120.0° |
C2 | C3 | C4 | C5 | 175.2° | 180.0° |
C3 | C2 | N1 | H1 | 11.1° | 25.0° |
C2 | C3 | H4 | H5 | 119.6° | 120.0° |
C2 | C3 | C4 | H6 | 55.3° | 60.0° |
C2 | C3 | C4 | H7 | 64.9° | 60.0° |
C3 | C4 | C5 | H6 | 119.9° | 120.0° |
C3 | C4 | C5 | H7 | 119.9° | 120.0° |
C3 | C4 | C5 | O8 | 2.8° | 0.0° |
C3 | C4 | C5 | O8E | 177.2° | 180.0° |
C4 | C3 | C2 | H2 | 22.7° | 55.0° |
C4 | C3 | H4 | H5 | 119.6° | 120.0° |
C3 | C4 | H6 | H7 | 120.3° | 120.0° |
C4 | C5 | O8 | O8E | 180.0° | 180.0° |
C5 | C4 | C3 | H4 | 64.7° | 60.0° |
C5 | C4 | C3 | H5 | 55.1° | 60.0° |
C5 | C4 | H6 | H7 | 120.3° | 120.0° |
C4 | C5 | O8E | H26 | 180.0° | 180.0° |
O8 | C5 | C4 | H6 | 117.1° | 120.0° |
O8 | C5 | C4 | H7 | 122.8° | 120.0° |
O8 | C5 | O8E | H26 | 0.0° | 0.0° |
O8E | C5 | C4 | H6 | 62.9° | 60.0° |
O8E | C5 | C4 | H7 | 57.3° | 60.0° |
H1 | N1 | C2 | H2 | 130.5° | 145.0° |
H2 | C2 | C3 | H4 | 142.8° | 175.0° |
H2 | C2 | C3 | H5 | 97.4° | 65.0° |
H3 | N2 | C7 | H9 | 175.7° | 145.0° |
H4 | C3 | C4 | H6 | 175.4° | 179.9° |
H4 | C3 | C4 | H7 | 55.2° | 60.0° |
H5 | C3 | C4 | H6 | 64.9° | 60.0° |
H5 | C3 | C4 | H7 | 175.0° | 180.0° |
H9 | C7 | C8 | H10 | 68.2° | 174.9° |
H9 | C7 | C8 | H11 | 173.5° | 65.0° |
H10 | C8 | C9 | H12 | 170.1° | 180.0° |
H10 | C8 | C9 | H13 | 68.4° | 60.0° |
H11 | C8 | C9 | H12 | 51.8° | 60.0° |
H11 | C8 | C9 | H13 | 173.3° | 180.0° |
H16 | C12 | C13 | H18 | 115.3° | 180.0° |
H16 | C12 | C13 | H19 | 126.2° | 60.0° |
H17 | C12 | C13 | H18 | 6.4° | 60.0° |
H17 | C12 | C13 | H19 | 112.1° | 180.0° |
H21 | C22 | C23 | H22 | 0.5° | 0.0° |
H22 | C23 | C24 | H23 | 0.2° | 0.0° |
H23 | C24 | C25 | H24 | 0.0° | 0.0° |
H24 | C25 | C26 | H25 | 0.1° | 0.0° |