PRD_000787
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | C2 | sing | 1.51Å | 1.52Å | |
C1 | C8 | doub | 1.38Å | 1.39Å | Aromatic |
C1 | C12 | sing | 1.38Å | 1.39Å | Aromatic |
C2 | C3 | sing | 1.53Å | 1.53Å | |
C3 | N4 | sing | 1.47Å | 1.45Å | |
C3 | C5 | sing | 1.51Å | 1.51Å | |
C5 | N6 | sing | 1.35Å | 1.32Å | |
C5 | O7 | doub | 1.21Å | 1.23Å | |
N6 | C13 | sing | 1.47Å | 1.46Å | |
N6 | C21 | sing | 1.47Å | 1.47Å | |
C8 | C9 | sing | 1.38Å | 1.39Å | Aromatic |
C9 | C10 | doub | 1.38Å | 1.39Å | Aromatic |
C10 | C11 | sing | 1.38Å | 1.39Å | Aromatic |
C11 | C12 | doub | 1.38Å | 1.39Å | Aromatic |
C13 | C14 | sing | 1.51Å | 1.51Å | |
C13 | C19 | sing | 1.54Å | 1.53Å | |
C14 | O15 | doub | 1.21Å | 1.23Å | |
C14 | N16 | sing | 1.35Å | 1.34Å | |
N16 | C17 | sing | 1.46Å | 1.47Å | |
C17 | C18 | sing | 1.51Å | 1.51Å | |
C18 | C22 | doub | 1.38Å | 1.39Å | Aromatic |
C18 | C26 | sing | 1.39Å | 1.37Å | Aromatic |
C19 | C20 | sing | 1.55Å | 1.53Å | |
C20 | C21 | sing | 1.55Å | 1.52Å | |
C22 | N23 | sing | 1.32Å | 1.34Å | Aromatic |
N23 | C24 | doub | 1.32Å | 1.34Å | Aromatic |
C24 | C25 | sing | 1.38Å | 1.39Å | Aromatic |
C25 | C26 | doub | 1.39Å | 1.39Å | Aromatic |
C26 | CL27 | sing | 1.74Å | 1.78Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
C2 | H2A | sing | 1.09Å | 1.10Å | |
C3 | H3 | sing | 1.09Å | 1.10Å | |
N4 | HN4 | sing | 1.01Å | 1.00Å | |
N4 | HN4A | sing | 1.01Å | 1.00Å | |
C8 | H8 | sing | 1.08Å | 1.08Å | |
C9 | H9 | sing | 1.08Å | 1.08Å | |
C10 | H10 | sing | 1.08Å | 1.08Å | |
C11 | H11 | sing | 1.08Å | 1.08Å | |
C12 | H12 | sing | 1.08Å | 1.08Å | |
C13 | H13 | sing | 1.09Å | 1.10Å | |
N16 | HN16 | sing | 0.97Å | 1.00Å | |
C17 | H17 | sing | 1.09Å | 1.10Å | |
C17 | H17A | sing | 1.09Å | 1.10Å | |
C19 | H19 | sing | 1.09Å | 1.10Å | |
C19 | H19A | sing | 1.09Å | 1.10Å | |
C20 | H20 | sing | 1.09Å | 1.10Å | |
C20 | H20A | sing | 1.09Å | 1.10Å | |
C21 | H21 | sing | 1.09Å | 1.10Å | |
C21 | H21A | sing | 1.09Å | 1.10Å | |
C22 | H22 | sing | 1.08Å | 1.08Å | |
C24 | H24 | sing | 1.08Å | 1.08Å | |
C25 | H25 | sing | 1.08Å | 1.08Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | C1 | C8 | 121.6° | 120.0° |
C2 | C1 | C12 | 120.2° | 120.0° |
C1 | C2 | C3 | 112.3° | 109.5° |
C1 | C2 | H2 | 108.5° | 109.5° |
C1 | C2 | H2A | 108.5° | 109.5° |
C8 | C1 | C12 | 118.2° | 120.0° |
C1 | C8 | C9 | 119.9° | 120.0° |
C1 | C8 | H8 | 120.1° | 120.0° |
C1 | C12 | C11 | 122.0° | 120.0° |
C1 | C12 | H12 | 119.0° | 120.0° |
C2 | C3 | N4 | 108.2° | 109.5° |
C2 | C3 | C5 | 112.9° | 109.5° |
C3 | C2 | H2 | 108.6° | 109.5° |
C3 | C2 | H2A | 108.6° | 109.4° |
C2 | C3 | H3 | 107.5° | 109.5° |
N4 | C3 | C5 | 108.0° | 109.5° |
N4 | C3 | H3 | 112.5° | 109.5° |
C3 | N4 | HN4 | 109.5° | 111.0° |
C3 | N4 | HN4A | 109.5° | 111.0° |
C3 | C5 | N6 | 118.7° | 120.0° |
C3 | C5 | O7 | 120.7° | 120.0° |
C5 | C3 | H3 | 107.7° | 109.5° |
N6 | C5 | O7 | 120.6° | 120.0° |
C5 | N6 | C13 | 118.9° | 125.7° |
C5 | N6 | C21 | 128.2° | 125.7° |
C13 | N6 | C21 | 112.9° | 108.7° |
N6 | C13 | C14 | 109.7° | 109.9° |
N6 | C13 | C19 | 105.2° | 107.3° |
N6 | C13 | H13 | 112.7° | 109.9° |
N6 | C21 | C20 | 103.7° | 104.8° |
N6 | C21 | H21 | 111.4° | 110.3° |
N6 | C21 | H21A | 111.4° | 110.4° |
C8 | C9 | C10 | 121.8° | 120.0° |
C9 | C8 | H8 | 120.1° | 120.0° |
C8 | C9 | H9 | 119.1° | 120.0° |
C9 | C10 | C11 | 118.3° | 120.0° |
C10 | C9 | H9 | 119.1° | 120.0° |
C9 | C10 | H10 | 120.8° | 120.0° |
C10 | C11 | C12 | 119.8° | 120.0° |
C11 | C10 | H10 | 120.9° | 120.0° |
C10 | C11 | H11 | 120.1° | 120.0° |
C12 | C11 | H11 | 120.1° | 120.0° |
C11 | C12 | H12 | 119.0° | 120.0° |
C14 | C13 | C19 | 111.3° | 109.9° |
C13 | C14 | O15 | 121.4° | 120.0° |
C13 | C14 | N16 | 116.8° | 120.0° |
C14 | C13 | H13 | 106.8° | 109.9° |
C13 | C19 | C20 | 105.8° | 103.0° |
C19 | C13 | H13 | 111.2° | 110.0° |
C13 | C19 | H19 | 110.7° | 110.7° |
C13 | C19 | H19A | 110.7° | 110.7° |
O15 | C14 | N16 | 121.7° | 120.0° |
C14 | N16 | C17 | 122.8° | 120.0° |
C14 | N16 | HN16 | 118.6° | 120.0° |
N16 | C17 | C18 | 111.7° | 109.5° |
C17 | N16 | HN16 | 118.6° | 120.0° |
N16 | C17 | H17 | 108.8° | 109.5° |
N16 | C17 | H17A | 108.8° | 109.5° |
C17 | C18 | C22 | 120.8° | 120.4° |
C17 | C18 | C26 | 121.1° | 120.4° |
C18 | C17 | H17 | 108.7° | 109.5° |
C18 | C17 | H17A | 108.7° | 109.4° |
C22 | C18 | C26 | 118.0° | 119.1° |
C18 | C22 | N23 | 120.4° | 120.8° |
C18 | C22 | H22 | 119.8° | 119.6° |
C18 | C26 | C25 | 121.4° | 118.4° |
C18 | C26 | CL27 | 119.5° | 120.8° |
C19 | C20 | C21 | 106.1° | 101.5° |
C20 | C19 | H19 | 110.7° | 110.7° |
C20 | C19 | H19A | 110.7° | 110.7° |
C19 | C20 | H20 | 110.6° | 111.0° |
C19 | C20 | H20A | 110.6° | 111.0° |
C21 | C20 | H20 | 110.6° | 111.2° |
C21 | C20 | H20A | 110.6° | 110.9° |
C20 | C21 | H21 | 111.4° | 110.5° |
C20 | C21 | H21A | 111.4° | 110.4° |
C22 | N23 | C24 | 121.9° | 121.7° |
N23 | C22 | H22 | 119.8° | 119.6° |
N23 | C24 | C25 | 120.2° | 120.8° |
N23 | C24 | H24 | 119.9° | 119.6° |
C24 | C25 | C26 | 118.0° | 119.1° |
C25 | C24 | H24 | 119.9° | 119.6° |
C24 | C25 | H25 | 121.0° | 120.4° |
C25 | C26 | CL27 | 119.1° | 120.8° |
C26 | C25 | H25 | 121.0° | 120.5° |
H2 | C2 | H2A | 110.4° | 109.5° |
HN4 | N4 | HN4A | 109.4° | 111.0° |
H17 | C17 | H17A | 110.2° | 109.4° |
H19 | C19 | H19A | 108.2° | 110.8° |
H20 | C20 | H20A | 108.3° | 111.0° |
H21 | C21 | H21A | 107.5° | 110.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | C1 | C8 | C12 | 178.5° | 179.7° |
C1 | C2 | C3 | H2 | 120.0° | 120.0° |
C1 | C2 | C3 | H2A | 120.0° | 120.0° |
C1 | C2 | C3 | N4 | 172.3° | 65.0° |
C1 | C2 | C3 | C5 | 68.3° | 175.0° |
C2 | C1 | C8 | C9 | 179.5° | 180.0° |
C2 | C1 | C12 | C11 | 179.9° | 179.8° |
C1 | C2 | H2 | H2A | 118.8° | 120.0° |
C1 | C2 | C3 | H3 | 50.5° | 55.0° |
C2 | C1 | C8 | H8 | 0.5° | 0.0° |
C2 | C1 | C12 | H12 | 0.1° | 0.0° |
C8 | C1 | C2 | C3 | 62.6° | 90.0° |
C1 | C8 | C9 | H8 | 180.0° | 179.9° |
C1 | C8 | C9 | C10 | 0.4° | 0.1° |
C8 | C1 | C12 | C11 | 1.6° | 0.5° |
C8 | C1 | C2 | H2 | 57.4° | 150.0° |
C8 | C1 | C2 | H2A | 177.4° | 30.0° |
C1 | C8 | C9 | H9 | 179.6° | 180.0° |
C8 | C1 | C12 | H12 | 178.4° | 179.7° |
C12 | C1 | C2 | C3 | 118.9° | 90.3° |
C12 | C1 | C8 | C9 | 1.0° | 0.3° |
C1 | C12 | C11 | C10 | 1.5° | 0.4° |
C1 | C12 | C11 | H12 | 180.0° | 179.8° |
C12 | C1 | C2 | H2 | 121.1° | 29.8° |
C12 | C1 | C2 | H2A | 1.1° | 149.8° |
C12 | C1 | C8 | H8 | 179.0° | 179.8° |
C1 | C12 | C11 | H11 | 178.5° | 179.7° |
C2 | C3 | N4 | C5 | 122.6° | 120.0° |
C2 | C3 | N4 | H3 | 118.7° | 120.0° |
C2 | C3 | C5 | H3 | 118.6° | 120.0° |
C2 | C3 | C5 | N6 | 106.2° | 80.0° |
C2 | C3 | C5 | O7 | 73.6° | 100.0° |
C3 | C2 | H2 | H2A | 118.9° | 119.9° |
C2 | C3 | N4 | HN4 | 180.0° | 60.0° |
C2 | C3 | N4 | HN4A | 60.0° | 176.0° |
N4 | C3 | C5 | H3 | 121.8° | 120.0° |
N4 | C3 | C5 | N6 | 134.2° | 160.0° |
N4 | C3 | C5 | O7 | 46.0° | 20.0° |
N4 | C3 | C2 | H2 | 52.3° | 55.0° |
N4 | C3 | C2 | H2A | 67.7° | 175.0° |
C3 | N4 | HN4 | HN4A | 120.0° | 124.0° |
C3 | C5 | N6 | O7 | 179.8° | 180.0° |
C3 | C5 | N6 | C13 | 178.7° | 180.0° |
C3 | C5 | N6 | C21 | 1.2° | 0.2° |
C5 | C3 | C2 | H2 | 171.7° | 65.0° |
C5 | C3 | C2 | H2A | 51.7° | 55.0° |
C5 | C3 | N4 | HN4 | 57.4° | 60.0° |
C5 | C3 | N4 | HN4A | 177.4° | 64.0° |
C5 | N6 | C13 | C21 | 177.9° | 179.8° |
C5 | N6 | C13 | C14 | 59.3° | 59.5° |
C5 | N6 | C13 | C19 | 179.2° | 178.9° |
C5 | N6 | C21 | C20 | 166.2° | 155.8° |
N6 | C5 | C3 | H3 | 12.4° | 40.0° |
C5 | N6 | C13 | H13 | 59.5° | 61.5° |
C5 | N6 | C21 | H21 | 46.2° | 85.3° |
C5 | N6 | C21 | H21A | 73.8° | 36.9° |
O7 | C5 | N6 | C13 | 1.5° | 0.1° |
O7 | C5 | N6 | C21 | 179.0° | 179.7° |
O7 | C5 | C3 | H3 | 167.8° | 140.0° |
N6 | C13 | C14 | C19 | 116.0° | 117.8° |
N6 | C13 | C14 | H13 | 122.5° | 121.0° |
N6 | C13 | C19 | H13 | 122.3° | 119.5° |
N6 | C13 | C14 | O15 | 43.0° | 0.0° |
N6 | C13 | C14 | N16 | 134.7° | 180.0° |
N6 | C13 | C19 | C20 | 14.2° | 22.2° |
C13 | N6 | C21 | C20 | 16.1° | 24.4° |
N6 | C13 | C19 | H19 | 105.8° | 140.6° |
N6 | C13 | C19 | H19A | 134.2° | 96.2° |
C13 | N6 | C21 | H21 | 136.1° | 94.6° |
C13 | N6 | C21 | H21A | 103.8° | 143.2° |
C21 | N6 | C13 | C14 | 118.5° | 120.6° |
C21 | N6 | C13 | C19 | 1.3° | 1.2° |
N6 | C21 | C20 | C19 | 24.4° | 37.3° |
N6 | C21 | C20 | H21 | 120.0° | 118.8° |
N6 | C21 | C20 | H21A | 120.0° | 118.8° |
C21 | N6 | C13 | H13 | 122.6° | 118.3° |
N6 | C21 | C20 | H20 | 144.4° | 80.8° |
N6 | C21 | C20 | H20A | 95.6° | 155.2° |
N6 | C21 | H21 | H21A | 122.3° | 122.2° |
C8 | C9 | C10 | H9 | 180.0° | 180.0° |
C8 | C9 | C10 | C11 | 0.3° | 0.0° |
C8 | C9 | C10 | H10 | 179.7° | 180.0° |
C9 | C10 | C11 | H10 | 180.0° | 180.0° |
C9 | C10 | C11 | C12 | 0.8° | 0.2° |
C10 | C9 | C8 | H8 | 179.6° | 180.0° |
C9 | C10 | C11 | H11 | 179.2° | 180.0° |
C10 | C11 | C12 | H11 | 180.0° | 179.8° |
C11 | C10 | C9 | H9 | 179.7° | 180.0° |
C10 | C11 | C12 | H12 | 178.5° | 179.8° |
C12 | C11 | C10 | H10 | 179.2° | 179.8° |
C14 | C13 | C19 | H13 | 118.9° | 121.1° |
C13 | C14 | O15 | N16 | 177.6° | 179.9° |
C13 | C14 | N16 | C17 | 179.7° | 180.0° |
C14 | C13 | C19 | C20 | 133.0° | 97.2° |
C13 | C14 | N16 | HN16 | 0.3° | 0.0° |
C14 | C13 | C19 | H19 | 13.0° | 21.2° |
C14 | C13 | C19 | H19A | 107.0° | 144.4° |
C19 | C13 | C14 | O15 | 73.1° | 117.8° |
C19 | C13 | C14 | N16 | 109.2° | 62.3° |
C13 | C19 | C20 | H19 | 120.0° | 118.4° |
C13 | C19 | C20 | H19A | 120.0° | 118.4° |
C13 | C19 | C20 | C21 | 24.2° | 35.6° |
C13 | C19 | H19 | H19A | 121.5° | 123.2° |
C13 | C19 | C20 | H20 | 144.2° | 82.5° |
C13 | C19 | C20 | H20A | 95.8° | 153.5° |
O15 | C14 | N16 | C17 | 2.0° | 0.0° |
O15 | C14 | C13 | H13 | 165.4° | 121.0° |
O15 | C14 | N16 | HN16 | 178.0° | 180.0° |
C14 | N16 | C17 | HN16 | 180.0° | 180.0° |
C14 | N16 | C17 | C18 | 79.3° | 180.0° |
N16 | C14 | C13 | H13 | 12.3° | 58.9° |
C14 | N16 | C17 | H17 | 160.7° | 59.9° |
C14 | N16 | C17 | H17A | 40.7° | 60.0° |
N16 | C17 | C18 | H17 | 120.0° | 120.0° |
N16 | C17 | C18 | H17A | 120.0° | 120.0° |
N16 | C17 | C18 | C22 | 91.6° | 100.0° |
N16 | C17 | C18 | C26 | 88.8° | 79.7° |
N16 | C17 | H17 | H17A | 119.1° | 120.0° |
C17 | C18 | C22 | C26 | 179.6° | 179.7° |
C17 | C18 | C22 | N23 | 180.0° | 180.0° |
C17 | C18 | C26 | C25 | 179.8° | 179.7° |
C17 | C18 | C26 | CL27 | 0.9° | 0.0° |
C18 | C17 | N16 | HN16 | 100.7° | 0.0° |
C18 | C17 | H17 | H17A | 119.1° | 119.9° |
C17 | C18 | C22 | H22 | 0.1° | 0.0° |
C18 | C22 | N23 | H22 | 180.0° | 180.0° |
C18 | C22 | N23 | C24 | 0.1° | 0.0° |
C22 | C18 | C26 | C25 | 0.6° | 0.6° |
C22 | C18 | C26 | CL27 | 179.5° | 179.7° |
C22 | C18 | C17 | H17 | 148.4° | 140.0° |
C22 | C18 | C17 | H17A | 28.4° | 20.1° |
C26 | C18 | C22 | N23 | 0.3° | 0.3° |
C18 | C26 | C25 | C24 | 0.4° | 0.6° |
C18 | C26 | C25 | CL27 | 178.9° | 179.7° |
C26 | C18 | C17 | H17 | 31.2° | 40.3° |
C26 | C18 | C17 | H17A | 151.2° | 160.3° |
C26 | C18 | C22 | H22 | 179.7° | 179.7° |
C18 | C26 | C25 | H25 | 179.6° | 179.7° |
C19 | C20 | C21 | H20 | 120.0° | 118.0° |
C19 | C20 | C21 | H20A | 120.0° | 118.0° |
C20 | C19 | C13 | H13 | 108.1° | 141.7° |
C20 | C19 | H19 | H19A | 121.5° | 123.2° |
C19 | C20 | H20 | H20A | 121.4° | 123.9° |
C19 | C20 | C21 | H21 | 144.3° | 81.5° |
C19 | C20 | C21 | H21A | 95.6° | 156.1° |
C21 | C20 | C19 | H19 | 95.9° | 154.0° |
C21 | C20 | C19 | H19A | 144.1° | 82.7° |
C21 | C20 | H20 | H20A | 121.4° | 123.9° |
C20 | C21 | H21 | H21A | 122.3° | 122.4° |
C22 | N23 | C24 | C25 | 0.3° | 0.0° |
C22 | N23 | C24 | H24 | 179.7° | 180.0° |
N23 | C24 | C25 | H24 | 180.0° | 179.9° |
N23 | C24 | C25 | C26 | 0.1° | 0.3° |
C24 | N23 | C22 | H22 | 179.9° | 180.0° |
N23 | C24 | C25 | H25 | 179.9° | 180.0° |
C24 | C25 | C26 | H25 | 180.0° | 179.7° |
C24 | C25 | C26 | CL27 | 179.3° | 179.7° |
C26 | C25 | C24 | H24 | 179.9° | 179.7° |
CL27 | C26 | C25 | H25 | 0.7° | 0.0° |
H2 | C2 | C3 | H3 | 69.5° | 175.0° |
H2A | C2 | C3 | H3 | 170.5° | 65.0° |
H3 | C3 | N4 | HN4 | 61.3° | 180.0° |
H3 | C3 | N4 | HN4A | 58.6° | 56.1° |
H8 | C8 | C9 | H9 | 0.4° | 0.0° |
H9 | C9 | C10 | H10 | 0.3° | 0.0° |
H10 | C10 | C11 | H11 | 0.8° | 0.0° |
H11 | C11 | C12 | H12 | 1.5° | 0.1° |
H13 | C13 | C19 | H19 | 131.9° | 100.0° |
H13 | C13 | C19 | H19A | 11.9° | 23.3° |
HN16 | N16 | C17 | H17 | 19.3° | 120.0° |
HN16 | N16 | C17 | H17A | 139.3° | 120.0° |
H19 | C19 | C20 | H20 | 24.2° | 35.9° |
H19 | C19 | C20 | H20A | 144.1° | 88.1° |
H19A | C19 | C20 | H20 | 95.8° | 159.1° |
H19A | C19 | C20 | H20A | 24.1° | 35.2° |
H20 | C20 | C21 | H21 | 95.6° | 160.4° |
H20 | C20 | C21 | H21A | 24.4° | 38.0° |
H20A | C20 | C21 | H21 | 24.3° | 36.4° |
H20A | C20 | C21 | H21A | 144.4° | 86.0° |
H24 | C24 | C25 | H25 | 0.1° | 0.0° |