Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_000640

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
F6C25sing1.40Å1.32Å
C25F4sing1.40Å1.33Å
C25F5sing1.40Å1.33Å
C25C4sing1.53Å1.54Å
C4C3sing1.53Å1.54Å
C4N5sing1.47Å1.45Å
C4H4sing1.09Å1.10Å
C3O3sing1.43Å1.44Å
C3C2sing1.53Å1.54Å
C3H3sing1.09Å1.10Å
O3HO3sing0.97Å0.95Å
C2C1sing1.51Å1.53Å
C2H21sing1.09Å1.10Å
C2H22sing1.09Å1.10Å
C1O2sing1.34Å1.26Å
C1O1doub1.21Å1.26Å
O2HO2sing0.97Å0.95Å
N5C6sing1.35Å1.45Å
N5HN5sing0.97Å1.00Å
C6O6doub1.21Å1.23Å
C6C7sing1.51Å1.54Å
C7C29sing1.53Å1.53Å
C7N8sing1.47Å1.46Å
C7H7sing1.09Å1.10Å
C29H291sing1.09Å1.10Å
C29H292sing1.09Å1.10Å
C29H293sing1.09Å1.10Å
N8C9sing1.35Å1.46Å
N8HN8sing0.97Å1.00Å
C9O9doub1.21Å1.24Å
C9C10sing1.51Å1.53Å
C10C11sing1.53Å1.53Å
C10H101sing1.09Å1.10Å
C10H102sing1.09Å1.10Å
C11O11sing1.43Å1.42Å
C11C12sing1.53Å1.54Å
C11H11sing1.09Å1.10Å
O11H1sing0.97Å0.95Å
C12C13sing1.53Å1.55Å
C12N14sing1.46Å1.46Å
C12H12sing1.09Å1.10Å
C13F3sing1.40Å1.32Å
C13F2sing1.40Å1.33Å
C13F1sing1.40Å1.33Å
N14C15sing1.35Å1.46Å
N14H14sing0.97Å1.00Å
C15O15doub1.21Å1.24Å
C15C16sing1.51Å1.53Å
C16C33sing1.53Å1.54Å
C16N17sing1.46Å1.46Å
C16H16sing1.09Å1.10Å
C33C35sing1.53Å1.52Å
C33C34sing1.53Å1.52Å
C33H33sing1.09Å1.10Å
C35H351sing1.09Å1.10Å
C35H352sing1.09Å1.10Å
C35H353sing1.09Å1.10Å
C34H341sing1.09Å1.10Å
C34H342sing1.09Å1.10Å
C34H343sing1.09Å1.10Å
N17C18sing1.35Å1.45Å
N17H17sing0.97Å1.00Å
C18O18doub1.21Å1.23Å
C18C19sing1.51Å1.53Å
C19C36sing1.53Å1.54Å
C19N20sing1.47Å1.45Å
C19H19sing1.09Å1.10Å
C36C38sing1.53Å1.54Å
C36C37sing1.53Å1.53Å
C36H36sing1.09Å1.10Å
C38H381sing1.09Å1.10Å
C38H382sing1.09Å1.10Å
C38H383sing1.09Å1.10Å
C37H371sing1.09Å1.10Å
C37H372sing1.09Å1.10Å
C37H373sing1.09Å1.10Å
N20C21sing1.35Å1.45Å
N20H20sing0.97Å1.00Å
C21O21doub1.21Å1.24Å
C21C22sing1.51Å1.53Å
C22C23sing1.53Å1.53Å
C22H221sing1.09Å1.10Å
C22H222sing1.09Å1.10Å
C23C39sing1.53Å1.53Å
C23C24sing1.53Å1.53Å
C23H23sing1.09Å1.10Å
C39H391sing1.09Å1.10Å
C39H392sing1.09Å1.10Å
C39H393sing1.09Å1.10Å
C24H241sing1.09Å1.10Å
C24H242sing1.09Å1.10Å
C24H243sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
F6C25F4108.1°109.5°
F6C25F5109.6°109.4°
F6C25C4107.8°109.5°
F4C25F5107.6°109.4°
F4C25C4111.6°109.5°
F5C25C4112.0°109.5°
C25C4C3113.0°109.5°
C25C4N5107.5°109.5°
C25C4H4108.9°109.5°
C3C4N5110.9°109.5°
C3C4H4105.4°109.4°
C4C3O3111.1°109.5°
C4C3C2113.4°109.5°
C4C3H3106.6°109.5°
N5C4H4111.1°109.5°
C4N5C6125.3°120.0°
C4N5HN5117.3°120.0°
O3C3C2112.3°109.4°
O3C3H3107.8°109.5°
C3O3HO3109.5°114.0°
C2C3H3105.2°109.5°
C3C2C1113.7°109.4°
C3C2H21108.1°109.5°
C3C2H22108.1°109.5°
C1C2H21108.1°109.5°
C1C2H22108.1°109.5°
C2C1O2118.2°120.0°
C2C1O1119.6°120.0°
H21C2H22110.8°109.5°
O2C1O1122.2°120.0°
C1O2HO2109.5°117.0°
C6N5HN5117.3°120.0°
N5C6O6120.4°120.0°
N5C6C7117.1°120.0°
O6C6C7122.5°120.0°
C6C7C29112.9°109.5°
C6C7N8113.1°109.5°
C6C7H7104.9°109.5°
C29C7N8111.1°109.4°
C29C7H7107.2°109.4°
C7C29H291109.5°109.5°
C7C29H292109.4°109.5°
C7C29H293109.5°109.5°
N8C7H7107.0°109.5°
C7N8C9123.8°120.0°
C7N8HN8118.1°120.0°
H291C29H292109.5°109.5°
H291C29H293109.5°109.4°
H292C29H293109.5°109.5°
C9N8HN8118.1°120.0°
N8C9O9121.6°120.1°
N8C9C10118.9°120.0°
O9C9C10119.0°120.0°
C9C10C11111.9°109.5°
C9C10H101108.7°109.5°
C9C10H102108.6°109.5°
C11C10H101108.7°109.5°
C11C10H102108.7°109.5°
C10C11O11110.1°109.5°
C10C11C12112.9°109.5°
C10C11H11106.4°109.4°
H101C10H102110.3°109.4°
O11C11C12108.7°109.5°
O11C11H11110.8°109.5°
C11O11H1109.5°114.0°
C12C11H11107.9°109.5°
C11C12C13114.1°109.5°
C11C12N14110.2°109.5°
C11C12H12107.1°109.5°
C13C12N14113.3°109.5°
C13C12H12103.6°109.4°
C12C13F3110.3°109.5°
C12C13F2109.2°109.5°
C12C13F1112.9°109.4°
N14C12H12108.0°109.5°
C12N14C15120.3°120.0°
C12N14H14119.8°120.0°
F3C13F2108.3°109.5°
F3C13F1106.6°109.5°
F2C13F1109.4°109.5°
C15N14H14119.9°120.0°
N14C15O15120.5°120.0°
N14C15C16119.0°120.0°
O15C15C16119.7°120.0°
C15C16C33113.3°109.5°
C15C16N17105.8°109.5°
C15C16H16111.2°109.5°
C33C16N17114.1°109.4°
C33C16H16102.3°109.4°
C16C33C35112.8°109.5°
C16C33C34112.1°109.5°
C16C33H33104.8°109.4°
N17C16H16110.3°109.5°
C16N17C18122.0°120.0°
C16N17H17119.0°120.0°
C35C33C34108.3°109.5°
C35C33H33109.0°109.5°
C33C35H351109.5°109.5°
C33C35H352109.5°109.5°
C33C35H353109.4°109.5°
C34C33H33109.7°109.4°
C33C34H341109.5°109.5°
C33C34H342109.4°109.4°
C33C34H343109.4°109.4°
H351C35H352109.5°109.4°
H351C35H353109.5°109.5°
H352C35H353109.5°109.5°
H341C34H342109.5°109.5°
H341C34H343109.5°109.5°
H342C34H343109.5°109.5°
C18N17H17119.0°120.0°
N17C18O18119.5°120.0°
N17C18C19118.8°120.0°
O18C18C19120.7°120.0°
C18C19C36114.3°109.5°
C18C19N20107.4°109.5°
C18C19H19108.8°109.5°
C36C19N20112.7°109.5°
C36C19H19103.1°109.4°
C19C36C38113.9°109.4°
C19C36C37110.6°109.4°
C19C36H36105.9°109.5°
N20C19H19110.5°109.5°
C19N20C21120.6°120.0°
C19N20H20119.7°120.0°
C38C36C37110.6°109.5°
C38C36H36106.0°109.5°
C36C38H381109.5°109.5°
C36C38H382109.5°109.4°
C36C38H383109.5°109.5°
C37C36H36109.6°109.5°
C36C37H371109.5°109.5°
C36C37H372109.5°109.5°
C36C37H373109.5°109.5°
H381C38H382109.5°109.5°
H381C38H383109.4°109.5°
H382C38H383109.5°109.5°
H371C37H372109.4°109.4°
H371C37H373109.5°109.5°
H372C37H373109.5°109.4°
C21N20H20119.7°120.0°
N20C21O21121.0°120.0°
N20C21C22118.2°120.0°
O21C21C22120.7°120.0°
C21C22C23112.0°109.5°
C21C22H221108.6°109.5°
C21C22H222108.6°109.5°
C23C22H221108.6°109.5°
C23C22H222108.6°109.4°
C22C23C39110.4°109.4°
C22C23C24113.1°109.5°
C22C23H23107.4°109.5°
H221C22H222110.3°109.5°
C39C23C24112.6°109.5°
C39C23H23107.9°109.5°
C23C39H391109.5°109.4°
C23C39H392109.4°109.5°
C23C39H393109.5°109.5°
C24C23H23105.0°109.5°
C23C24H241109.5°109.5°
C23C24H242109.5°109.4°
C23C24H243109.5°109.4°
H391C39H392109.4°109.4°
H391C39H393109.4°109.5°
H392C39H393109.5°109.5°
H241C24H242109.5°109.5°
H241C24H243109.5°109.5°
H242C24H243109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
F6C25F4F5118.3°120.0°
F6C25F4C4118.4°120.0°
F6C25F5C4119.6°120.0°
F6C25C4C3154.7°60.0°
F6C25C4N582.6°180.0°
F6C25C4H437.9°60.0°
F4C25F5C4123.1°120.0°
F4C25C4C386.8°60.0°
F4C25C4N536.0°60.0°
F4C25C4H4156.5°180.0°
F5C25C4C334.0°180.0°
F5C25C4N5156.7°60.0°
F5C25C4H482.8°60.0°
C25C4C3N5120.8°120.0°
C25C4C3H4118.9°120.0°
C25C4N5H4119.1°120.1°
C25C4C3O342.1°60.0°
C25C4C3C2169.7°180.0°
C25C4C3H375.1°60.0°
C25C4N5C6101.2°85.0°
C25C4N5HN578.8°95.0°
C3C4N5H4116.9°120.0°
C4C3O3C2128.2°120.0°
C4C3O3H3116.5°120.0°
C4C3C2H3116.1°120.0°
C4C3O3HO3129.1°60.0°
C4C3C2C1100.5°175.0°
C4C3C2H2119.5°65.0°
C4C3C2H22139.5°55.0°
C3C4N5C6134.8°155.0°
C3C4N5HN545.2°25.0°
N5C4C3O378.7°60.0°
N5C4C3C248.9°60.0°
N5C4C3H3164.1°180.0°
C4N5C6HN5180.0°180.0°
C4N5C6O63.7°0.0°
C4N5C6C7176.5°180.0°
H4C4C3O3160.9°179.9°
H4C4C3C271.5°60.0°
H4C4C3H343.8°60.0°
H4C4N5C617.9°35.0°
H4C4N5HN5162.1°144.9°
O3C3C2H3117.0°120.0°
O3C3C2C126.5°65.0°
O3C3C2H21146.4°55.0°
O3C3C2H2293.6°175.0°
C2C3O3HO31.0°60.0°
C3C2C1H21120.0°120.0°
C3C2C1H22120.0°120.0°
C3C2H21H22118.3°120.0°
C3C2C1O2101.4°180.0°
C3C2C1O179.0°0.0°
H3C3O3HO3114.4°180.0°
H3C3C2C1143.4°55.0°
H3C3C2H2196.6°175.0°
H3C3C2H2223.4°65.0°
C1C2H21H22118.3°120.0°
C2C1O2O1179.6°180.0°
C2C1O2HO2179.6°180.0°
H21C2C1O218.6°60.0°
H21C2C1O1161.1°120.0°
H22C2C1O2138.6°60.0°
H22C2C1O141.0°120.0°
O1C1O2HO20.0°0.0°
N5C6O6C7179.9°180.0°
N5C6C7C2980.6°60.0°
N5C6C7N8152.1°180.0°
N5C6C7H735.8°59.9°
HN5N5C6O6176.3°180.0°
HN5N5C6C73.5°0.0°
O6C6C7C2999.2°120.0°
O6C6C7N828.1°0.0°
O6C6C7H7144.4°120.0°
C6C7C29N8128.3°120.0°
C6C7C29H7115.1°120.0°
C6C7N8H7115.1°120.1°
C6C7C29H291180.0°180.0°
C6C7C29H29260.0°60.0°
C6C7C29H29360.0°60.0°
C6C7N8C977.8°155.0°
C6C7N8HN8102.2°25.0°
C29C7N8H7116.7°119.9°
C7C29H291H292120.0°120.0°
C7C29H291H293120.0°120.0°
C7C29H292H293120.0°120.0°
C29C7N8C9153.9°85.0°
C29C7N8HN826.1°95.0°
N8C7C29H29151.6°60.0°
N8C7C29H29268.3°60.0°
N8C7C29H293171.7°180.0°
C7N8C9HN8180.0°180.0°
C7N8C9O90.6°0.0°
C7N8C9C10172.3°180.0°
H7C7C29H29164.9°59.9°
H7C7C29H292175.1°180.0°
H7C7C29H29355.1°60.0°
H7C7N8C937.3°34.9°
H7C7N8HN8142.7°145.1°
H291C29H292H293120.0°120.0°
N8C9O9C10171.8°180.0°
N8C9C10C11102.7°180.0°
N8C9C10H101137.3°60.0°
N8C9C10H10217.2°60.0°
HN8N8C9O9179.4°180.0°
HN8N8C9C107.7°0.0°
O9C9C10C1185.3°0.0°
O9C9C10H10134.7°120.0°
O9C9C10H102154.8°120.0°
C9C10C11H101120.0°120.0°
C9C10C11H102120.0°120.0°
C9C10H101H102119.0°120.0°
C9C10C11O11162.0°65.0°
C9C10C11C1276.2°175.0°
C9C10C11H1141.9°55.0°
C11C10H101H102119.0°120.0°
C10C11O11C12124.2°120.0°
C10C11O11H11117.4°120.0°
C10C11C12H11117.2°120.0°
C10C11O11H1180.0°60.0°
C10C11C12C13156.4°180.0°
C10C11C12N1474.8°60.0°
C10C11C12H1242.4°60.0°
H101C10C11O1178.0°175.0°
H101C10C11C1243.8°55.0°
H101C10C11H11161.9°65.0°
H102C10C11O1142.1°55.0°
H102C10C11C12163.8°65.0°
H102C10C11H1178.1°175.0°
O11C11C12H11120.2°120.0°
O11C11C12C1381.0°60.0°
O11C11C12N1447.7°60.0°
O11C11C12H12165.0°180.0°
C12C11O11H155.8°60.0°
C11C12C13N14127.2°120.0°
C11C12C13H12116.0°120.0°
C11C12N14H12116.7°120.1°
C11C12C13F3161.4°60.0°
C11C12C13F242.4°180.0°
C11C12C13F179.5°60.0°
C11C12N14C15130.5°155.0°
C11C12N14H1449.5°25.0°
H11C11O11H162.6°180.0°
H11C11C12C1339.2°60.0°
H11C11C12N14167.9°180.0°
H11C11C12H1274.8°59.9°
C13C12N14H12114.1°119.9°
C12C13F3F2119.5°120.0°
C12C13F3F1122.9°120.0°
C12C13F2F1124.0°120.0°
C13C12N14C15100.3°85.0°
C13C12N14H1479.7°95.0°
N14C12C13F371.4°180.0°
N14C12C13F2169.6°60.0°
N14C12C13F147.7°60.0°
C12N14C15H14180.0°180.0°
C12N14C15O151.0°5.4°
C12N14C15C16170.3°174.6°
H12C12C13F345.3°60.0°
H12C12C13F273.6°60.0°
H12C12C13F1164.5°180.0°
H12C12N14C1513.9°35.0°
H12C12N14H14166.1°145.1°
F3C13F2F1115.9°120.0°
N14C15O15C16169.2°180.0°
N14C15C16C33132.8°84.2°
N14C15C16N17101.6°155.8°
N14C15C16H1618.2°35.7°
H14N14C15O15179.0°174.6°
H14N14C15C169.7°5.4°
O15C15C16C3357.9°95.8°
O15C15C16N1767.8°24.2°
O15C15C16H16172.5°144.3°
C15C16C33N17121.1°120.0°
C15C16C33H16119.7°120.0°
C15C16N17H16120.3°120.0°
C15C16C33C35172.7°64.9°
C15C16C33C3450.2°175.1°
C15C16C33H3368.8°55.1°
C15C16N17C18125.8°154.9°
C15C16N17H1754.2°24.9°
C33C16N17H16114.5°119.9°
C16C33C35C34124.7°120.0°
C16C33C35H33116.0°120.0°
C16C33C34H33116.1°119.9°
C16C33C35H351180.0°53.7°
C16C33C35H35260.0°173.6°
C16C33C35H35360.0°66.4°
C16C33C34H341180.0°60.0°
C16C33C34H34260.0°180.0°
C16C33C34H34360.0°60.1°
C33C16N17C18109.0°85.0°
C33C16N17H1771.0°95.1°
N17C16C33C3566.1°175.1°
N17C16C33C34171.3°55.0°
N17C16C33H3352.3°64.9°
C16N17C18H17180.0°179.9°
C16N17C18O182.5°4.9°
C16N17C18C19171.4°175.0°
H16C16C33C3553.0°55.1°
H16C16C33C3469.6°65.0°
H16C16C33H33171.4°175.1°
H16C16N17C185.4°34.9°
H16C16N17H17174.6°145.0°
C35C33C34H33118.8°120.0°
C33C35H351H352120.0°119.9°
C33C35H351H353120.0°120.1°
C33C35H352H353120.0°120.1°
C35C33C34H34154.9°180.0°
C35C33C34H342174.9°60.0°
C35C33C34H34365.1°60.0°
C34C33C35H35155.3°66.4°
C34C33C35H35264.7°53.5°
C34C33C35H353175.3°173.6°
C33C34H341H342120.0°120.0°
C33C34H341H343120.0°120.0°
C33C34H342H343119.9°119.9°
H33C33C35H35164.0°173.6°
H33C33C35H352176.0°66.5°
H33C33C35H35356.0°53.6°
H33C33C34H34163.9°60.0°
H33C33C34H34256.1°60.1°
H33C33C34H343176.1°180.0°
H351C35H352H353120.0°120.0°
H341C34H342H343120.1°120.1°
N17C18O18C19168.7°179.9°
N17C18C19C36125.3°87.7°
N17C18C19N20108.9°152.3°
N17C18C19H1910.8°32.2°
H17N17C18O18177.5°175.0°
H17N17C18C198.6°5.1°
O18C18C19C3665.9°92.3°
O18C18C19N2059.9°27.7°
O18C18C19H19179.5°147.7°
C18C19C36N20123.0°120.0°
C18C19C36H19117.9°120.0°
C18C19N20H19118.5°120.0°
C18C19C36C38137.6°63.9°
C18C19C36C3797.1°176.1°
C18C19C36H3621.6°56.0°
C18C19N20C21114.0°155.0°
C18C19N20H2066.0°25.0°
C36C19N20H19114.7°120.0°
C19C36C38C37125.3°119.9°
C19C36C38H36116.0°120.0°
C19C36C37H36116.4°120.0°
C19C36C38H381180.0°60.4°
C19C36C38H38260.0°179.6°
C19C36C38H38360.0°59.7°
C19C36C37H371180.0°60.1°
C19C36C37H37260.0°180.0°
C19C36C37H37360.0°60.0°
C36C19N20C21119.3°85.0°
C36C19N20H2060.7°95.1°
N20C19C36C3814.6°176.0°
N20C19C36C37139.9°56.1°
N20C19C36H36101.4°64.0°
C19N20C21H20180.0°179.9°
C19N20C21O212.2°0.1°
C19N20C21C22177.7°180.0°
H19C19C36C38104.5°56.0°
H19C19C36C3720.8°63.9°
H19C19C36H36139.4°176.0°
H19C19N20C214.5°34.9°
H19C19N20H20175.5°145.0°
C38C36C37H36116.5°120.0°
C36C38H381H382120.0°119.9°
C36C38H381H383120.0°120.0°
C36C38H382H383120.0°120.0°
C38C36C37H37152.9°180.0°
C38C36C37H372172.9°60.1°
C38C36C37H37367.1°59.9°
C37C36C38H38154.7°59.6°
C37C36C38H38265.3°60.4°
C37C36C38H383174.7°179.6°
C36C37H371H372120.0°120.0°
C36C37H371H373120.0°120.1°
C36C37H372H373120.0°120.0°
H36C36C38H38164.0°179.6°
H36C36C38H382176.0°59.6°
H36C36C38H38356.0°60.3°
H36C36C37H37163.6°60.0°
H36C36C37H37256.4°60.0°
H36C36C37H373176.4°179.9°
H381C38H382H383119.9°120.1°
H371C37H372H373120.0°120.0°
N20C21O21C22175.5°179.9°
N20C21C22C2380.6°180.0°
N20C21C22H22139.4°60.0°
N20C21C22H222159.4°60.0°
H20N20C21O21177.8°180.0°
H20N20C21C222.2°0.1°
O21C21C22C23103.8°0.1°
O21C21C22H221136.2°120.1°
O21C21C22H22216.2°119.9°
C21C22C23H221120.0°120.0°
C21C22C23H222120.0°120.0°
C21C22H221H222118.9°120.0°
C21C22C23C3989.0°65.0°
C21C22C23C2438.2°175.0°
C21C22C23H23153.5°55.0°
C23C22H221H222119.0°120.0°
C22C23C39C24127.4°120.0°
C22C23C39H23117.2°120.0°
C22C23C24H23116.8°120.0°
C22C23C39H391180.0°60.0°
C22C23C39H39260.0°180.0°
C22C23C39H39360.0°60.0°
C22C23C24H241180.0°60.0°
C22C23C24H24260.0°180.0°
C22C23C24H24360.0°60.0°
H221C22C23C3931.0°55.0°
H221C22C23C24158.2°65.0°
H221C22C23H2386.5°175.0°
H222C22C23C39151.0°175.0°
H222C22C23C2481.8°55.0°
H222C22C23H2333.5°65.0°
C39C23C24H23117.2°120.0°
C23C39H391H392120.0°120.0°
C23C39H391H393120.0°120.0°
C23C39H392H393120.0°120.1°
C39C23C24H24154.0°180.0°
C39C23C24H242174.0°60.0°
C39C23C24H24366.0°60.0°
C24C23C39H39152.6°60.0°
C24C23C39H39267.4°60.0°
C24C23C39H393172.6°180.0°
C23C24H241H242120.0°120.0°
C23C24H241H243120.0°120.0°
C23C24H242H243120.0°119.9°
H23C23C39H39162.8°180.0°
H23C23C39H392177.2°60.1°
H23C23C39H39357.2°60.0°
H23C23C24H24163.2°60.0°
H23C23C24H24256.8°60.0°
H23C23C24H243176.8°180.0°
H391C39H392H393120.0°120.0°
H241C24H242H243120.0°120.1°

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon