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PRD_000638

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1O1sing1.43Å1.39Å
C1C2sing1.53Å1.49Å
C1O5sing1.43Å1.45Å
C1H1sing1.09Å1.10Å
O1Psing1.61Å1.52Å
C2O2sing1.43Å1.48Å
C2C3sing1.53Å1.48Å
C2H2sing1.09Å1.10Å
O2HO2sing0.97Å0.95Å
C3O3sing1.43Å1.42Å
C3C4sing1.53Å1.52Å
C3H3sing1.09Å1.10Å
O3HO3sing0.97Å0.95Å
C4O4sing1.43Å1.40Å
C4C5sing1.53Å1.54Å
C4H4sing1.09Å1.10Å
O4HO4sing0.97Å0.95Å
C5O5sing1.43Å1.46Å
C5C6sing1.53Å1.53Å
C5H5sing1.09Å1.10Å
C6H61sing1.09Å1.10Å
C6H62sing1.09Å1.10Å
C6H63sing1.09Å1.10Å
PO1Pdoub1.48Å1.55Å
PO2Psing1.61Å1.46Å
O2PHOP2sing0.97Å0.95Å
NCAsing1.47Å1.46Å
NHsing1.01Å1.00Å
CACsing1.51Å1.50Å
CACBsing1.53Å1.52Å
CAHAsing1.09Å1.10Å
COdoub1.21Å1.22Å
CBCGsing1.53Å1.58Å
CBHB2sing1.09Å1.10Å
CBHB3sing1.09Å1.10Å
CGCD1sing1.53Å1.55Å
CGCD2sing1.53Å1.53Å
CGHGsing1.09Å1.10Å
CD1HD11sing1.09Å1.10Å
CD1HD12sing1.09Å1.10Å
CD1HD13sing1.09Å1.10Å
CD2HD21sing1.09Å1.10Å
CD2HD22sing1.09Å1.10Å
CD2HD23sing1.09Å1.10Å
N1CA1sing1.47Å1.47Å
N1H6sing0.97Å1.00Å
CA1C7sing1.51Å1.55Å
CA1CB1sing1.53Å1.55Å
CA1HA1sing1.09Å1.10Å
C7O6doub1.21Å1.27Å
C7OXTsing1.34Å1.30Å
CB1CG1sing1.51Å1.47Å
CB1HB21sing1.09Å1.10Å
CB1HB31sing1.09Å1.10Å
CG1CD11doub1.34Å1.36ÅAromatic
CG1CD21sing1.47Å1.43ÅAromatic
CD11NE1sing1.37Å1.36ÅAromatic
CD11HD1sing1.08Å1.08Å
CD21CE2doub1.41Å1.43ÅAromatic
CD21CE3sing1.40Å1.41ÅAromatic
NE1CE2sing1.38Å1.36ÅAromatic
NE1HE1sing0.97Å1.00Å
CE2CZ2sing1.39Å1.38ÅAromatic
CE3CZ3doub1.37Å1.38ÅAromatic
CE3HE3sing1.08Å1.08Å
CZ2CH2doub1.38Å1.38ÅAromatic
CZ2HZ2sing1.08Å1.08Å
CZ3CH2sing1.39Å1.42ÅAromatic
CZ3HZ3sing1.08Å1.08Å
CH2HH2sing1.08Å1.08Å
OXTHXTsing0.97Å0.95Å
PNsing1.68Å1.42Å
CN1sing1.35Å1.38Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C1C297.0°109.5°
O1C1O5111.4°109.5°
O1C1H1117.4°109.5°
C1O1P130.2°123.0°
C2C1O5112.9°109.5°
C2C1H1115.9°109.5°
C1C2O2113.8°109.5°
C1C2C3105.7°109.1°
C1C2H2107.1°109.6°
O5C1H1102.7°109.5°
C1O5C5116.8°114.1°
O1PO1P116.0°109.5°
O1PO2P113.7°109.5°
O1PN105.6°109.5°
O2C2C3102.3°109.5°
O2C2H2110.2°109.5°
C2O2HO2109.5°114.0°
C3C2H2117.9°109.5°
C2C3O3100.5°109.5°
C2C3C4105.4°109.0°
C2C3H3119.1°109.5°
O3C3C4114.0°109.5°
O3C3H3111.2°109.6°
C3O3HO3109.5°114.0°
C4C3H3106.8°109.6°
C3C4O4111.4°109.5°
C3C4C5108.7°109.2°
C3C4H4109.8°109.5°
O4C4C5112.8°109.5°
O4C4H4105.6°109.6°
C4O4HO4109.5°114.0°
C5C4H4108.4°109.6°
C4C5O5105.6°109.4°
C4C5C6116.8°109.5°
C4C5H5108.9°109.4°
O5C5C6113.9°109.5°
O5C5H5112.1°109.5°
C6C5H599.6°109.5°
C5C6H61109.5°109.5°
C5C6H62109.4°109.5°
C5C6H63109.5°109.4°
H61C6H62109.5°109.5°
H61C6H63109.5°109.5°
H62C6H63109.5°109.4°
O1PPO2P107.1°109.5°
O1PPN103.5°109.5°
PO2PHOP2109.5°114.0°
O2PPN110.3°109.4°
CANH103.8°111.0°
NCAC117.3°109.5°
NCACB112.9°109.5°
NCAHA100.6°109.4°
CANP127.5°111.0°
HNP103.8°110.9°
CCACB108.0°109.5°
CCAHA106.3°109.4°
CACO114.7°120.0°
CACN1117.9°120.0°
CBCAHA111.3°109.5°
CACBCG113.7°109.5°
CACBHB2108.1°109.5°
CACBHB3107.1°109.5°
OCN1127.4°120.0°
CGCBHB2108.1°109.4°
CGCBHB3107.1°109.5°
CBCGCD1118.4°109.5°
CBCGCD2112.8°109.5°
CBCGHG99.0°109.5°
HB2CBHB3112.9°109.5°
CD1CGCD2104.8°109.5°
CD1CGHG107.9°109.4°
CGCD1HD11109.5°109.4°
CGCD1HD12109.4°109.5°
CGCD1HD13109.4°109.5°
CD2CGHG114.1°109.5°
CGCD2HD21109.5°109.5°
CGCD2HD22109.4°109.5°
CGCD2HD23109.5°109.5°
HD11CD1HD12109.5°109.5°
HD11CD1HD13109.4°109.5°
HD12CD1HD13109.5°109.5°
HD21CD2HD22109.5°109.5°
HD21CD2HD23109.5°109.5°
HD22CD2HD23109.5°109.5°
CA1N1H6116.4°120.0°
N1CA1C7113.6°109.4°
N1CA1CB1108.3°109.4°
N1CA1HA1110.4°109.5°
CA1N1C127.3°120.0°
H6N1C116.4°120.0°
C7CA1CB1116.7°109.5°
C7CA1HA1100.5°109.5°
CA1C7O6111.6°120.0°
CA1C7OXT120.4°120.0°
CB1CA1HA1106.8°109.5°
CA1CB1CG1113.0°109.5°
CA1CB1HB21108.3°109.5°
CA1CB1HB31107.5°109.5°
O6C7OXT128.0°120.0°
C7OXTHXT109.5°117.0°
CG1CB1HB21108.3°109.4°
CG1CB1HB31107.5°109.5°
CB1CG1CD11125.8°126.5°
CB1CG1CD21127.3°126.5°
HB21CB1HB31112.3°109.5°
CD11CG1CD21106.9°107.0°
CG1CD11NE1110.8°109.9°
CG1CD11HD1124.6°125.0°
CG1CD21CE2105.8°106.0°
CG1CD21CE3133.7°134.0°
NE1CD11HD1124.6°125.1°
CD11NE1CE2108.4°109.9°
CD11NE1HE1125.8°125.0°
CE2CD21CE3120.5°120.0°
CD21CE2NE1108.1°107.2°
CD21CE2CZ2122.9°119.3°
CD21CE3CZ3116.4°119.7°
CD21CE3HE3121.8°120.1°
CE2NE1HE1125.8°125.1°
NE1CE2CZ2129.0°133.5°
CE2CZ2CH2115.6°119.8°
CE2CZ2HZ2122.2°120.1°
CZ3CE3HE3121.8°120.1°
CE3CZ3CH2121.9°120.6°
CE3CZ3HZ3119.0°119.7°
CH2CZ2HZ2122.2°120.1°
CZ2CH2CZ3122.6°120.7°
CZ2CH2HH2118.7°119.7°
CH2CZ3HZ3119.0°119.7°
CZ3CH2HH2118.7°119.7°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C1C2O5116.8°120.0°
O1C1C2H1125.1°120.0°
O1C1O5H1126.5°120.0°
O1C1C2O2170.4°177.7°
O1C1C2C358.9°62.4°
O1C1C2H267.5°57.5°
O1C1O5C556.2°58.8°
C1O1PO1P47.9°51.3°
C1O1PO2P172.8°171.3°
C1O1PN66.2°68.7°
C2C1O5H1125.6°120.0°
C2C1O1P105.2°145.9°
C1C2O2C3113.5°119.7°
C1C2O2H2120.4°120.2°
C1C2C3H2119.6°120.0°
C1C2O2HO243.5°60.1°
C1C2C3O3174.1°176.8°
C1C2C3C467.2°57.0°
C1C2C3H352.5°63.0°
C2C1O5C551.7°61.2°
O5C1O1P136.8°94.1°
O5C1C2O253.6°62.3°
O5C1C2C357.8°57.6°
O5C1C2H2175.7°177.6°
C1O5C5C450.1°61.1°
C1O5C5C6179.5°178.9°
C1O5C5H568.4°58.8°
H1C1O1P18.9°25.9°
H1C1C2O264.5°57.7°
H1C1C2C3176.0°177.6°
H1C1C2H257.6°62.4°
H1C1O5C5177.3°178.9°
O1PO1PO2P128.2°120.0°
O1PO1PN115.2°120.0°
O1PO2PN118.4°120.0°
O1PO2PHOP2128.9°60.0°
O1PNCA147.9°135.5°
O1PNH27.9°11.6°
O2C2C3H2121.0°120.1°
O2C2C3O366.6°56.9°
O2C2C3C452.2°62.9°
O2C2C3H3171.9°177.1°
C3C2O2HO269.9°179.7°
C2C3O3C4112.2°119.5°
C2C3O3H3127.0°120.2°
C2C3C4H3127.6°119.9°
C2C3O3HO338.9°60.0°
C2C3C4O4163.6°176.9°
C2C3C4C571.5°57.0°
C2C3C4H447.0°63.0°
H2C2O2HO2163.9°60.1°
H2C2C3O354.5°63.2°
H2C2C3C4173.2°177.0°
H2C2C3H367.1°57.0°
O3C3C4H3123.2°120.3°
O3C3C4O454.3°63.3°
O3C3C4C5179.2°176.8°
O3C3C4H462.3°56.9°
C4C3O3HO3151.1°179.6°
C3C4O4C5122.6°119.7°
C3C4O4H4119.2°120.2°
C3C4C5H4119.4°119.9°
C3C4O4HO413.8°180.0°
C3C4C5O559.4°57.6°
C3C4C5C6172.9°177.6°
C3C4C5H561.2°62.4°
H3C3O3HO388.2°60.2°
H3C3C4O468.8°57.0°
H3C3C4C556.1°62.9°
H3C3C4H4174.5°177.1°
O4C4C5H4116.5°120.2°
O4C4C5O5176.5°177.5°
O4C4C5C648.8°62.5°
O4C4C5H562.9°57.5°
C5C4O4HO4136.4°60.4°
C4C5O5C6129.4°120.0°
C4C5O5H5118.5°119.9°
C4C5C6H5117.0°119.9°
C4C5C6H6139.0°60.0°
C4C5C6H62159.1°180.0°
C4C5C6H6381.0°60.0°
H4C4O4HO4105.4°59.8°
H4C4C5O560.0°62.3°
H4C4C5C667.7°57.7°
H4C4C5H5179.5°177.7°
O5C5C6H5119.5°120.1°
O5C5C6H61162.6°180.0°
O5C5C6H6277.4°60.0°
O5C5C6H6342.6°59.9°
C5C6H61H62120.0°120.0°
C5C6H61H63120.0°120.0°
C5C6H62H63120.0°119.9°
H5C5C6H6177.9°60.0°
H5C5C6H6242.1°60.1°
H5C5C6H63162.1°180.0°
H61C6H62H63120.0°120.0°
O1PPO2PN112.0°120.0°
O1PPO2PHOP2101.6°180.0°
O1PPNCA25.5°15.5°
O1PPNH94.5°108.4°
O2PPNCA88.9°104.5°
O2PPNH151.2°131.6°
HOP2O2PPN10.4°60.0°
CANHP135.0°123.9°
NCACCB128.9°120.0°
NCACHA111.5°120.0°
NCACBHA112.3°120.0°
NCACO150.8°0.1°
NCACBCG180.0°66.6°
NCACBHB260.1°53.4°
NCACBHB361.8°173.4°
NCACN130.1°180.0°
HNCAC15.1°0.0°
HNCACB111.5°120.1°
HNCAHA129.8°119.9°
CCACBHA116.3°120.0°
CACON1179.1°179.9°
CCACBCG48.6°173.3°
CCACBHB2168.5°66.7°
CCACBHB369.6°53.3°
CACN1CA1176.7°180.0°
CACN1H63.3°0.0°
CCANP104.9°123.9°
CBCACO80.3°120.0°
CACBCGHB2120.0°120.0°
CACBCGHB3118.1°120.0°
CACBHB2HB3118.3°120.0°
CACBCGCD164.6°177.3°
CACBCGCD2172.4°57.3°
CACBCGHG51.4°62.8°
CBCANP128.5°116.0°
CBCACN198.9°59.9°
HACACO39.3°120.0°
HACACBCG67.8°53.3°
HACACBHB252.2°173.3°
HACACBHB3174.1°66.7°
HACANP9.8°3.9°
HACACN1141.5°60.1°
OCN1CA14.2°0.1°
OCN1H6175.7°179.9°
CGCBHB2HB3118.3°120.0°
CBCGCD1CD2126.9°120.0°
CBCGCD1HG111.2°120.0°
CBCGCD2HG112.0°120.0°
CBCGCD1HD1137.2°64.9°
CBCGCD1HD1282.9°175.1°
CBCGCD1HD13157.1°55.1°
CBCGCD2HD21174.2°65.7°
CBCGCD2HD2254.2°174.4°
CBCGCD2HD2365.8°54.4°
HB2CBCGCD155.3°62.8°
HB2CBCGCD267.6°177.2°
HB2CBCGHG171.4°57.2°
HB3CBCGCD1177.2°57.3°
HB3CBCGCD254.3°62.8°
HB3CBCGHG66.7°177.2°
CD1CGCD2HG117.8°120.0°
CGCD1HD11HD12120.0°120.0°
CGCD1HD11HD13119.9°120.0°
CGCD1HD12HD13120.0°120.0°
CD1CGCD2HD2143.9°174.3°
CD1CGCD2HD2276.0°54.3°
CD1CGCD2HD23164.0°65.7°
CD2CGCD1HD11164.1°55.1°
CD2CGCD1HD1244.0°64.9°
CD2CGCD1HD1376.0°175.1°
CGCD2HD21HD22120.0°120.0°
CGCD2HD21HD23120.0°120.0°
CGCD2HD22HD23120.0°120.0°
HGCGCD1HD1174.0°175.1°
HGCGCD1HD12166.0°55.2°
HGCGCD1HD1345.9°64.8°
HGCGCD2HD2173.9°54.3°
HGCGCD2HD22166.1°65.6°
HGCGCD2HD2346.1°174.4°
HD11CD1HD12HD13120.0°120.0°
HD21CD2HD22HD23120.0°120.0°
CA1N1H6C180.0°180.0°
N1CA1C7CB1127.1°120.0°
N1CA1C7HA1117.9°120.0°
N1CA1CB1HA1118.8°120.0°
N1CA1C7O612.3°0.0°
N1CA1C7OXT168.3°180.0°
N1CA1CB1CG173.9°65.0°
N1CA1CB1HB21166.1°55.0°
N1CA1CB1HB3144.6°175.0°
H6N1CA1C711.2°95.0°
H6N1CA1CB1120.2°25.0°
H6N1CA1HA1123.3°145.0°
C7CA1CB1HA1111.4°120.1°
CA1C7O6OXT179.3°180.0°
C7CA1CB1CG155.8°175.0°
C7CA1CB1HB2164.2°65.0°
C7CA1CB1HB31174.3°55.0°
CA1C7OXTHXT179.3°180.0°
C7CA1N1C168.8°85.0°
CB1CA1C7O6114.9°120.0°
CB1CA1C7OXT64.5°60.0°
CA1CB1CG1HB21120.0°120.0°
CA1CB1CG1HB31118.5°120.0°
CA1CB1HB21HB31118.6°120.0°
CA1CB1CG1CD1182.0°94.9°
CA1CB1CG1CD2196.7°84.7°
CB1CA1N1C59.8°155.0°
HA1CA1C7O6130.2°120.0°
HA1CA1C7OXT50.4°60.0°
HA1CA1CB1CG1167.3°55.0°
HA1CA1CB1HB2147.3°175.0°
HA1CA1CB1HB3174.3°65.0°
HA1CA1N1C56.7°35.0°
O6C7OXTHXT0.0°0.0°
CG1CB1HB21HB31118.5°120.0°
CB1CG1CD11CD21178.9°179.7°
CB1CG1CD11NE1178.6°180.0°
CB1CG1CD11HD11.4°0.1°
CB1CG1CD21CE2179.1°180.0°
CB1CG1CD21CE31.0°0.1°
HB21CB1CG1CD11158.0°145.0°
HB21CB1CG1CD2123.3°35.4°
HB31CB1CG1CD1136.4°25.1°
HB31CB1CG1CD21144.8°155.3°
CG1CD11NE1HD1180.0°179.9°
CD11CG1CD21CE20.2°0.3°
CD11CG1CD21CE3179.9°179.8°
CG1CD11NE1CE20.8°0.2°
CG1CD11NE1HE1179.2°179.9°
CD21CG1CD11NE10.3°0.3°
CD21CG1CD11HD1179.7°179.8°
CG1CD21CE2CE3179.9°179.9°
CG1CD21CE2NE10.7°0.2°
CG1CD21CE2CZ2179.4°180.0°
CG1CD21CE3CZ3178.9°179.9°
CG1CD21CE3HE31.1°0.1°
CD11NE1CE2CD210.9°0.0°
CD11NE1CE2HE1180.0°179.9°
CD11NE1CE2CZ2179.5°179.8°
HD1CD11NE1CE2179.3°179.9°
HD1CD11NE1HE10.7°0.0°
CD21CE2NE1CZ2178.6°179.8°
CD21CE2NE1HE1179.1°179.9°
CE2CD21CE3CZ31.2°0.1°
CE2CD21CE3HE3178.8°180.0°
CD21CE2CZ2CH20.8°0.0°
CD21CE2CZ2HZ2179.2°180.0°
CE3CD21CE2NE1179.4°179.9°
CE3CD21CE2CZ20.7°0.1°
CD21CE3CZ3HE3180.0°179.9°
CD21CE3CZ3CH21.9°0.0°
CD21CE3CZ3HZ3178.1°179.9°
NE1CE2CZ2CH2179.3°179.8°
NE1CE2CZ2HZ20.8°0.2°
HE1NE1CE2CZ20.5°0.1°
CE2CZ2CH2HZ2180.0°180.0°
CE2CZ2CH2CZ31.5°0.1°
CE2CZ2CH2HH2178.4°180.0°
CE3CZ3CH2CZ22.2°0.1°
CE3CZ3CH2HZ3180.0°179.9°
CE3CZ3CH2HH2177.7°180.0°
HE3CE3CZ3CH2178.1°179.9°
HE3CE3CZ3HZ31.9°0.0°
CZ2CH2CZ3HH2180.0°179.9°
CZ2CH2CZ3HZ3177.8°180.0°
HZ2CZ2CH2CZ3178.5°179.9°
HZ2CZ2CH2HH21.5°0.0°
HZ3CZ3CH2HH22.2°0.1°

222926

PDB entries from 2024-07-24

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