PRD_000595
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | N1 | sing | 1.47Å | 1.46Å | |
C4 | N1 | sing | 1.47Å | 1.47Å | |
N1 | C14 | sing | 1.35Å | 1.36Å | |
C2 | C1 | sing | 1.54Å | 1.56Å | |
C7 | C1 | sing | 1.51Å | 1.51Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
O22 | C7 | doub | 1.21Å | 1.23Å | |
C7 | N23 | sing | 1.35Å | 1.35Å | |
C24 | N23 | sing | 1.46Å | 1.48Å | |
N23 | HN23 | sing | 0.97Å | 1.00Å | |
C24 | C25 | sing | 1.51Å | 1.53Å | |
C24 | H24 | sing | 1.09Å | 1.10Å | |
C24 | H24A | sing | 1.09Å | 1.10Å | |
C25 | C30 | doub | 1.38Å | 1.39Å | Aromatic |
C25 | C26 | sing | 1.38Å | 1.40Å | Aromatic |
C26 | C27 | doub | 1.38Å | 1.39Å | Aromatic |
C26 | H26 | sing | 1.08Å | 1.08Å | |
C27 | C28 | sing | 1.39Å | 1.39Å | Aromatic |
C27 | H27 | sing | 1.08Å | 1.08Å | |
C29 | C28 | doub | 1.40Å | 1.39Å | Aromatic |
C28 | C21 | sing | 1.48Å | 1.61Å | |
C21 | N47 | doub | 1.30Å | 1.30Å | |
C21 | N46 | sing | 1.38Å | 1.31Å | |
N46 | HN46 | sing | 0.97Å | 1.00Å | |
N46 | HN4A | sing | 0.97Å | 1.00Å | |
N47 | HN47 | sing | 0.97Å | 1.00Å | |
C30 | C29 | sing | 1.38Å | 1.39Å | Aromatic |
C29 | H29 | sing | 1.08Å | 1.08Å | |
C30 | H30 | sing | 1.08Å | 1.08Å | |
C2 | C3 | sing | 1.55Å | 1.55Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
C2 | H2A | sing | 1.09Å | 1.10Å | |
C3 | C4 | sing | 1.55Å | 1.55Å | |
C3 | H3 | sing | 1.09Å | 1.10Å | |
C3 | H3A | sing | 1.09Å | 1.10Å | |
C4 | H4 | sing | 1.09Å | 1.10Å | |
C4 | H4A | sing | 1.09Å | 1.10Å | |
C14 | O32 | doub | 1.21Å | 1.23Å | |
C14 | C15 | sing | 1.51Å | 1.52Å | |
C15 | C33 | sing | 1.53Å | 1.56Å | |
C15 | H15 | sing | 1.09Å | 1.10Å | |
C15 | H15A | sing | 1.09Å | 1.10Å | |
C33 | C17 | sing | 1.53Å | 1.55Å | |
C33 | H33 | sing | 1.09Å | 1.10Å | |
C33 | H33A | sing | 1.09Å | 1.10Å | |
C17 | H17 | sing | 1.09Å | 1.10Å | |
C17 | H17A | sing | 1.09Å | 1.10Å | |
C17 | H17B | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C1 | N1 | C4 | 114.6° | 108.7° |
C1 | N1 | C14 | 120.6° | 125.6° |
N1 | C1 | C2 | 101.8° | 107.2° |
N1 | C1 | C7 | 106.4° | 109.8° |
N1 | C1 | H1 | 116.0° | 109.9° |
C4 | N1 | C14 | 121.9° | 125.7° |
N1 | C4 | C3 | 98.2° | 104.8° |
N1 | C4 | H4 | 113.4° | 110.6° |
N1 | C4 | H4A | 115.7° | 110.1° |
N1 | C14 | O32 | 124.7° | 120.0° |
N1 | C14 | C15 | 120.9° | 120.0° |
C2 | C1 | C7 | 109.2° | 110.0° |
C2 | C1 | H1 | 113.5° | 109.9° |
C1 | C2 | C3 | 102.2° | 103.0° |
C1 | C2 | H2 | 112.0° | 110.7° |
C1 | C2 | H2A | 113.5° | 110.7° |
C7 | C1 | H1 | 109.4° | 109.9° |
C1 | C7 | O22 | 118.6° | 120.0° |
C1 | C7 | N23 | 117.7° | 120.0° |
O22 | C7 | N23 | 123.7° | 120.0° |
C7 | N23 | C24 | 114.3° | 120.0° |
C7 | N23 | HN23 | 122.8° | 120.0° |
C24 | N23 | HN23 | 122.8° | 120.0° |
N23 | C24 | C25 | 107.1° | 109.4° |
N23 | C24 | H24 | 110.2° | 109.5° |
N23 | C24 | H24A | 110.8° | 109.5° |
C25 | C24 | H24 | 110.3° | 109.5° |
C25 | C24 | H24A | 110.8° | 109.5° |
C24 | C25 | C30 | 120.8° | 119.9° |
C24 | C25 | C26 | 119.3° | 119.8° |
H24 | C24 | H24A | 107.7° | 109.5° |
C30 | C25 | C26 | 119.8° | 120.3° |
C25 | C30 | C29 | 120.5° | 120.2° |
C25 | C30 | H30 | 119.7° | 120.0° |
C25 | C26 | C27 | 119.4° | 120.1° |
C25 | C26 | H26 | 120.3° | 119.9° |
C27 | C26 | H26 | 120.3° | 120.0° |
C26 | C27 | C28 | 120.4° | 119.9° |
C26 | C27 | H27 | 119.8° | 120.1° |
C28 | C27 | H27 | 119.8° | 120.0° |
C27 | C28 | C29 | 120.6° | 119.7° |
C27 | C28 | C21 | 119.0° | 120.2° |
C29 | C28 | C21 | 120.4° | 120.1° |
C28 | C29 | C30 | 119.3° | 119.8° |
C28 | C29 | H29 | 120.4° | 120.0° |
C28 | C21 | N47 | 117.6° | 120.0° |
C28 | C21 | N46 | 119.1° | 120.0° |
N47 | C21 | N46 | 123.3° | 120.0° |
C21 | N47 | HN47 | 107.3° | 120.0° |
C21 | N46 | HN46 | 107.3° | 120.0° |
C21 | N46 | HN4A | 126.4° | 120.0° |
HN46 | N46 | HN4A | 126.3° | 120.0° |
C30 | C29 | H29 | 120.3° | 120.1° |
C29 | C30 | H30 | 119.7° | 119.9° |
C3 | C2 | H2 | 111.9° | 110.7° |
C3 | C2 | H2A | 113.5° | 110.7° |
C2 | C3 | C4 | 101.7° | 101.5° |
C2 | C3 | H3 | 112.1° | 111.0° |
C2 | C3 | H3A | 113.8° | 111.0° |
H2 | C2 | H2A | 104.0° | 110.7° |
C4 | C3 | H3 | 112.2° | 111.2° |
C4 | C3 | H3A | 113.8° | 111.0° |
C3 | C4 | H4 | 113.4° | 110.4° |
C3 | C4 | H4A | 115.7° | 110.4° |
H3 | C3 | H3A | 103.7° | 110.9° |
H4 | C4 | H4A | 101.1° | 110.4° |
O32 | C14 | C15 | 114.4° | 120.0° |
C14 | C15 | C33 | 109.0° | 109.5° |
C14 | C15 | H15 | 109.6° | 109.5° |
C14 | C15 | H15A | 109.8° | 109.5° |
C33 | C15 | H15 | 109.7° | 109.5° |
C33 | C15 | H15A | 109.8° | 109.4° |
C15 | C33 | C17 | 109.9° | 109.5° |
C15 | C33 | H33 | 109.3° | 109.5° |
C15 | C33 | H33A | 109.2° | 109.5° |
H15 | C15 | H15A | 109.1° | 109.5° |
C17 | C33 | H33 | 109.3° | 109.5° |
C17 | C33 | H33A | 109.2° | 109.4° |
C33 | C17 | H17 | 109.5° | 109.5° |
C33 | C17 | H17A | 109.5° | 109.5° |
C33 | C17 | H17B | 109.5° | 109.5° |
H33 | C33 | H33A | 109.9° | 109.5° |
H17 | C17 | H17A | 109.5° | 109.5° |
H17 | C17 | H17B | 109.4° | 109.5° |
H17A | C17 | H17B | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C1 | N1 | C4 | C14 | 160.9° | 179.7° |
N1 | C1 | C2 | C7 | 112.2° | 119.4° |
N1 | C1 | C2 | H1 | 125.4° | 119.4° |
N1 | C1 | C7 | H1 | 126.0° | 121.0° |
N1 | C1 | C7 | O22 | 38.1° | 0.0° |
N1 | C1 | C7 | N23 | 140.8° | 180.0° |
N1 | C1 | C2 | C3 | 25.4° | 22.2° |
N1 | C1 | C2 | H2 | 94.6° | 140.6° |
N1 | C1 | C2 | H2A | 148.0° | 96.2° |
C1 | N1 | C4 | C3 | 29.5° | 24.4° |
C1 | N1 | C4 | H4 | 149.5° | 94.5° |
C1 | N1 | C4 | H4A | 94.3° | 143.1° |
C1 | N1 | C14 | O32 | 10.4° | 0.0° |
C1 | N1 | C14 | C15 | 169.4° | 180.0° |
C4 | N1 | C1 | C2 | 2.8° | 1.3° |
C4 | N1 | C1 | C7 | 111.6° | 120.8° |
C4 | N1 | C1 | H1 | 126.5° | 118.1° |
N1 | C4 | C3 | C2 | 43.4° | 37.3° |
N1 | C4 | C3 | H4 | 120.0° | 119.1° |
N1 | C4 | C3 | H4A | 123.7° | 118.5° |
N1 | C4 | C3 | H3 | 163.4° | 80.8° |
N1 | C4 | C3 | H3A | 79.4° | 155.3° |
N1 | C4 | H4 | H4A | 124.5° | 122.2° |
C4 | N1 | C14 | O32 | 170.1° | 179.7° |
C4 | N1 | C14 | C15 | 9.7° | 0.3° |
C14 | N1 | C1 | C2 | 163.9° | 179.0° |
C14 | N1 | C1 | C7 | 49.6° | 59.4° |
C14 | N1 | C1 | H1 | 72.3° | 61.6° |
C14 | N1 | C4 | C3 | 169.7° | 155.8° |
C14 | N1 | C4 | H4 | 49.7° | 85.3° |
C14 | N1 | C4 | H4A | 66.5° | 37.1° |
N1 | C14 | O32 | C15 | 179.8° | 180.0° |
N1 | C14 | C15 | C33 | 120.9° | 180.0° |
N1 | C14 | C15 | H15 | 119.1° | 60.0° |
N1 | C14 | C15 | H15A | 0.7° | 60.0° |
C2 | C1 | C7 | H1 | 124.8° | 121.2° |
C2 | C1 | C7 | O22 | 71.1° | 117.8° |
C2 | C1 | C7 | N23 | 110.0° | 62.2° |
C1 | C2 | C3 | H2 | 120.0° | 118.4° |
C1 | C2 | C3 | H2A | 122.6° | 118.4° |
C1 | C2 | H2 | H2A | 122.9° | 123.2° |
C1 | C2 | C3 | C4 | 43.7° | 35.6° |
C1 | C2 | C3 | H3 | 163.7° | 82.6° |
C1 | C2 | C3 | H3A | 79.0° | 153.6° |
C1 | C7 | O22 | N23 | 178.8° | 180.0° |
C1 | C7 | N23 | C24 | 179.5° | 180.0° |
C1 | C7 | N23 | HN23 | 0.5° | 0.1° |
C7 | C1 | C2 | C3 | 137.6° | 97.3° |
C7 | C1 | C2 | H2 | 17.6° | 21.1° |
C7 | C1 | C2 | H2A | 99.8° | 144.4° |
H1 | C1 | C7 | O22 | 164.1° | 121.0° |
H1 | C1 | C7 | N23 | 14.7° | 59.0° |
H1 | C1 | C2 | C3 | 100.1° | 141.5° |
H1 | C1 | C2 | H2 | 140.0° | 100.1° |
H1 | C1 | C2 | H2A | 22.6° | 23.2° |
O22 | C7 | N23 | C24 | 1.7° | 0.0° |
O22 | C7 | N23 | HN23 | 178.3° | 180.0° |
C7 | N23 | C24 | HN23 | 180.0° | 179.9° |
C7 | N23 | C24 | C25 | 110.5° | 180.0° |
C7 | N23 | C24 | H24 | 129.5° | 60.0° |
C7 | N23 | C24 | H24A | 10.4° | 60.1° |
N23 | C24 | C25 | H24 | 120.0° | 120.0° |
N23 | C24 | C25 | H24A | 120.9° | 120.0° |
N23 | C24 | H24 | H24A | 121.0° | 120.0° |
N23 | C24 | C25 | C30 | 86.2° | 90.0° |
N23 | C24 | C25 | C26 | 93.8° | 89.7° |
HN23 | N23 | C24 | C25 | 69.5° | 0.0° |
HN23 | N23 | C24 | H24 | 50.5° | 120.0° |
HN23 | N23 | C24 | H24A | 169.6° | 120.0° |
C25 | C24 | H24 | H24A | 120.9° | 120.0° |
C24 | C25 | C30 | C26 | 180.0° | 179.8° |
C24 | C25 | C26 | C27 | 180.0° | 180.0° |
C24 | C25 | C26 | H26 | 0.0° | 0.1° |
C24 | C25 | C30 | C29 | 180.0° | 179.7° |
C24 | C25 | C30 | H30 | 0.0° | 0.0° |
H24 | C24 | C25 | C30 | 33.8° | 30.0° |
H24 | C24 | C25 | C26 | 146.2° | 150.2° |
H24A | C24 | C25 | C30 | 152.9° | 150.0° |
H24A | C24 | C25 | C26 | 27.1° | 30.2° |
C30 | C25 | C26 | C27 | 0.0° | 0.2° |
C30 | C25 | C26 | H26 | 180.0° | 179.7° |
C25 | C30 | C29 | C28 | 0.0° | 0.5° |
C25 | C30 | C29 | H30 | 180.0° | 179.7° |
C25 | C30 | C29 | H29 | 180.0° | 179.7° |
C25 | C26 | C27 | H26 | 180.0° | 179.9° |
C25 | C26 | C27 | C28 | 0.0° | 0.0° |
C25 | C26 | C27 | H27 | 180.0° | 180.0° |
C26 | C25 | C30 | C29 | 0.0° | 0.5° |
C26 | C25 | C30 | H30 | 180.0° | 179.8° |
C26 | C27 | C28 | H27 | 180.0° | 180.0° |
C26 | C27 | C28 | C29 | 0.0° | 0.0° |
C26 | C27 | C28 | C21 | 180.0° | 180.0° |
H26 | C26 | C27 | C28 | 180.0° | 180.0° |
H26 | C26 | C27 | H27 | 0.0° | 0.1° |
C27 | C28 | C29 | C21 | 179.9° | 180.0° |
C27 | C28 | C21 | N47 | 14.7° | 0.0° |
C27 | C28 | C21 | N46 | 165.3° | 180.0° |
C27 | C28 | C29 | C30 | 0.0° | 0.2° |
C27 | C28 | C29 | H29 | 179.9° | 180.0° |
H27 | C27 | C28 | C29 | 180.0° | 180.0° |
H27 | C27 | C28 | C21 | 0.0° | 0.0° |
C29 | C28 | C21 | N47 | 165.4° | 180.0° |
C29 | C28 | C21 | N46 | 14.6° | 0.1° |
C28 | C29 | C30 | H29 | 180.0° | 179.8° |
C28 | C29 | C30 | H30 | 180.0° | 179.8° |
C28 | C21 | N47 | N46 | 180.0° | 180.0° |
C28 | C21 | N46 | HN46 | 0.0° | 0.0° |
C28 | C21 | N46 | HN4A | 180.0° | 180.0° |
C28 | C21 | N47 | HN47 | 180.0° | 180.0° |
C21 | C28 | C29 | C30 | 180.0° | 179.7° |
C21 | C28 | C29 | H29 | 0.0° | 0.1° |
N47 | C21 | N46 | HN46 | 180.0° | 180.0° |
N47 | C21 | N46 | HN4A | 0.0° | 0.0° |
C21 | N46 | HN46 | HN4A | 180.0° | 179.9° |
N46 | C21 | N47 | HN47 | 0.0° | 0.0° |
H29 | C29 | C30 | H30 | 0.1° | 0.0° |
C3 | C2 | H2 | H2A | 122.9° | 123.2° |
C2 | C3 | C4 | H3 | 120.0° | 118.0° |
C2 | C3 | C4 | H3A | 122.8° | 118.0° |
C2 | C3 | H3 | H3A | 123.2° | 123.9° |
C2 | C3 | C4 | H4 | 163.4° | 81.9° |
C2 | C3 | C4 | H4A | 80.3° | 155.8° |
H2 | C2 | C3 | C4 | 76.3° | 154.1° |
H2 | C2 | C3 | H3 | 43.7° | 35.8° |
H2 | C2 | C3 | H3A | 161.0° | 88.0° |
H2A | C2 | C3 | C4 | 166.3° | 82.7° |
H2A | C2 | C3 | H3 | 73.7° | 159.1° |
H2A | C2 | C3 | H3A | 43.6° | 35.2° |
C4 | C3 | H3 | H3A | 123.1° | 124.0° |
C3 | C4 | H4 | H4A | 124.6° | 122.3° |
H3 | C3 | C4 | H4 | 76.6° | 160.1° |
H3 | C3 | C4 | H4A | 39.6° | 37.8° |
H3A | C3 | C4 | H4 | 40.6° | 36.2° |
H3A | C3 | C4 | H4A | 156.9° | 86.2° |
O32 | C14 | C15 | C33 | 59.3° | 0.0° |
O32 | C14 | C15 | H15 | 60.7° | 120.0° |
O32 | C14 | C15 | H15A | 179.5° | 120.0° |
C14 | C15 | C33 | H15 | 120.0° | 120.1° |
C14 | C15 | C33 | H15A | 120.2° | 120.0° |
C14 | C15 | H15 | H15A | 120.2° | 120.0° |
C14 | C15 | C33 | C17 | 58.8° | 180.0° |
C14 | C15 | C33 | H33 | 61.2° | 60.0° |
C14 | C15 | C33 | H33A | 178.6° | 60.1° |
C33 | C15 | H15 | H15A | 120.2° | 119.9° |
C15 | C33 | C17 | H33 | 120.0° | 120.0° |
C15 | C33 | C17 | H33A | 119.8° | 120.0° |
C15 | C33 | H33 | H33A | 119.8° | 120.0° |
C15 | C33 | C17 | H17 | 11.7° | 60.0° |
C15 | C33 | C17 | H17A | 108.4° | 60.0° |
C15 | C33 | C17 | H17B | 131.6° | 180.0° |
H15 | C15 | C33 | C17 | 178.8° | 59.9° |
H15 | C15 | C33 | H33 | 58.8° | 179.9° |
H15 | C15 | C33 | H33A | 61.4° | 60.0° |
H15A | C15 | C33 | C17 | 61.4° | 60.0° |
H15A | C15 | C33 | H33 | 178.6° | 60.0° |
H15A | C15 | C33 | H33A | 58.4° | 180.0° |
C17 | C33 | H33 | H33A | 119.8° | 120.0° |
C33 | C17 | H17 | H17A | 120.0° | 120.0° |
C33 | C17 | H17 | H17B | 120.0° | 120.0° |
C33 | C17 | H17A | H17B | 120.0° | 120.0° |
H33 | C33 | C17 | H17 | 131.7° | 180.0° |
H33 | C33 | C17 | H17A | 11.6° | 60.0° |
H33 | C33 | C17 | H17B | 108.4° | 60.0° |
H33A | C33 | C17 | H17 | 108.1° | 60.0° |
H33A | C33 | C17 | H17A | 131.8° | 180.0° |
H33A | C33 | C17 | H17B | 11.8° | 60.0° |
H17 | C17 | H17A | H17B | 120.0° | 120.0° |