Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_000415

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C1sing1.47Å1.46Å
N1H1sing1.01Å1.00Å
N1H2sing1.01Å1.00Å
C1C2sing1.53Å1.46Å
C1C6sing1.53Å1.53Å
C1H3sing1.09Å1.10Å
C2C3sing1.53Å1.49Å
C2H4sing1.09Å1.10Å
C2H5sing1.09Å1.10Å
C3C4sing1.53Å1.53Å
C3C5sing1.53Å1.53Å
C3H6sing1.09Å1.10Å
C4H7sing1.09Å1.10Å
C4H8sing1.09Å1.10Å
C4H9sing1.09Å1.10Å
C5H10sing1.09Å1.10Å
C5H11sing1.09Å1.10Å
C5H12sing1.09Å1.10Å
C6C7sing1.51Å1.55Å
C6O1sing1.43Å1.40Å
C6H14sing1.09Å1.10Å
O1H13sing0.97Å0.95Å
C7O2doub1.21Å1.20Å
N2C8sing1.47Å1.42Å
N2H15sing0.97Å1.00Å
C8C9sing1.51Å1.54Å
C8C10sing1.53Å1.55Å
C8H16sing1.09Å1.10Å
C9O3doub1.21Å1.23Å
C10C11sing1.53Å1.53Å
C10C12sing1.53Å1.53Å
C10H17sing1.09Å1.10Å
C11H18sing1.09Å1.10Å
C11H19sing1.09Å1.10Å
C11H20sing1.09Å1.10Å
C12H21sing1.09Å1.10Å
C12H22sing1.09Å1.10Å
C12H23sing1.09Å1.10Å
N3C13sing1.46Å1.46Å
N3H24sing0.97Å1.00Å
C13C14sing1.51Å1.50Å
C13C15sing1.53Å1.53Å
C13H25sing1.09Å1.10Å
C14O4doub1.21Å1.24Å
C15C16sing1.53Å1.53Å
C15C17sing1.53Å1.53Å
C15H26sing1.09Å1.10Å
C16H27sing1.09Å1.10Å
C16H28sing1.09Å1.10Å
C16H29sing1.09Å1.10Å
C17H30sing1.09Å1.10Å
C17H31sing1.09Å1.10Å
C17H32sing1.09Å1.10Å
N4C18sing1.47Å1.45Å
N4H33sing0.97Å1.00Å
C18C19sing1.51Å1.54Å
C18C20sing1.53Å1.54Å
C18H34sing1.09Å1.10Å
C19O5doub1.21Å1.23Å
C19O8sing1.34Å1.23Å
C20C21sing1.51Å1.53Å
C20H35sing1.09Å1.10Å
C20H36sing1.09Å1.10Å
C21O6doub1.21Å1.25Å
C21O7sing1.34Å1.25Å
O7H37sing0.97Å0.95Å
O8H38sing0.97Å0.95Å
C7N2sing1.35Å1.35Å
C9N3sing1.35Å1.34Å
C14N4sing1.35Å1.32Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1N1H1109.5°111.0°
C1N1H2109.4°111.0°
N1C1C2102.9°109.4°
N1C1C6110.1°109.5°
N1C1H3110.5°109.5°
H1N1H2109.5°111.0°
C2C1C6113.1°109.5°
C2C1H3110.4°109.5°
C1C2C3115.9°109.5°
C1C2H4107.8°109.5°
C1C2H5107.8°109.5°
C6C1H3109.5°109.5°
C1C6C7109.3°109.5°
C1C6O1111.1°109.5°
C1C6H14107.9°109.4°
C3C2H4107.8°109.4°
C3C2H5107.9°109.5°
C2C3C4107.1°109.5°
C2C3C5109.6°109.5°
C2C3H6110.7°109.5°
H4C2H5109.5°109.5°
C4C3C5109.0°109.5°
C4C3H6110.2°109.5°
C3C4H7109.5°109.5°
C3C4H8109.5°109.5°
C3C4H9109.4°109.5°
C5C3H6110.2°109.4°
C3C5H10109.5°109.5°
C3C5H11109.5°109.5°
C3C5H12109.5°109.4°
H7C4H8109.4°109.4°
H7C4H9109.4°109.4°
H8C4H9109.5°109.5°
H10C5H11109.4°109.5°
H10C5H12109.5°109.5°
H11C5H12109.5°109.4°
C7C6O1111.2°109.5°
C7C6H14107.7°109.5°
C6C7O2127.9°120.0°
C6C7N2110.7°120.0°
O1C6H14109.6°109.5°
C6O1H13109.5°114.0°
O2C7N2121.5°120.0°
C8N2H15118.4°120.0°
N2C8C9112.6°109.4°
N2C8C10112.7°109.5°
N2C8H16108.9°109.5°
C8N2C7123.1°120.0°
H15N2C7118.5°120.1°
C9C8C10107.9°109.5°
C9C8H16107.4°109.5°
C8C9O3121.3°120.0°
C8C9N3115.3°120.0°
C10C8H16107.2°109.5°
C8C10C11108.9°109.5°
C8C10C12112.2°109.5°
C8C10H17108.8°109.4°
O3C9N3123.4°120.0°
C11C10C12108.9°109.4°
C11C10H17109.0°109.5°
C10C11H18109.5°109.5°
C10C11H19109.5°109.4°
C10C11H20109.5°109.5°
C12C10H17109.0°109.5°
C10C12H21109.5°109.5°
C10C12H22109.5°109.5°
C10C12H23109.5°109.5°
H18C11H19109.5°109.5°
H18C11H20109.5°109.5°
H19C11H20109.4°109.4°
H21C12H22109.5°109.4°
H21C12H23109.4°109.5°
H22C12H23109.5°109.5°
C13N3H24118.6°120.0°
N3C13C14112.7°109.5°
N3C13C15106.0°109.5°
N3C13H25112.7°109.5°
C13N3C9122.7°120.0°
H24N3C9118.6°120.0°
C14C13C15100.6°109.4°
C14C13H25112.2°109.5°
C13C14O4116.0°120.0°
C13C14N4120.4°120.0°
C15C13H25111.7°109.4°
C13C15C16111.1°109.4°
C13C15C17102.8°109.4°
C13C15H26111.3°109.5°
O4C14N4123.6°120.0°
C16C15C17108.9°109.5°
C16C15H26111.3°109.5°
C15C16H27109.5°109.5°
C15C16H28109.5°109.4°
C15C16H29109.5°109.4°
C17C15H26111.2°109.5°
C15C17H30109.5°109.5°
C15C17H31109.4°109.4°
C15C17H32109.5°109.4°
H27C16H28109.5°109.5°
H27C16H29109.5°109.5°
H28C16H29109.4°109.5°
H30C17H31109.5°109.5°
H30C17H32109.5°109.5°
H31C17H32109.5°109.5°
C18N4H33117.7°120.0°
N4C18C19109.4°109.5°
N4C18C20108.9°109.5°
N4C18H34108.8°109.5°
C18N4C14124.6°120.0°
H33N4C14117.7°120.0°
C19C18C20114.2°109.5°
C19C18H34107.7°109.5°
C18C19O5121.8°120.0°
C18C19O8121.9°120.0°
C20C18H34107.7°109.4°
C18C20C21116.1°109.5°
C18C20H35107.8°109.4°
C18C20H36107.8°109.5°
O5C19O8116.3°120.0°
C19O8H38109.5°117.0°
C21C20H35107.8°109.5°
C21C20H36107.8°109.5°
C20C21O6117.3°120.0°
C20C21O7116.9°120.0°
H35C20H36109.5°109.5°
O6C21O7125.8°120.0°
C21O7H37109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C1N1H1H2120.0°124.0°
N1C1C2C6118.8°120.0°
N1C1C2H3118.0°120.0°
N1C1C6H3121.7°120.0°
N1C1C2C3122.6°65.0°
N1C1C2H4116.5°175.0°
N1C1C2H51.6°55.0°
N1C1C6C7154.8°55.0°
N1C1C6O131.7°65.0°
N1C1C6H1488.4°175.0°
H1N1C1C2180.0°64.0°
H1N1C1C659.1°176.0°
H1N1C1H362.1°56.0°
H2N1C1C260.0°60.0°
H2N1C1C6179.1°59.9°
H2N1C1H357.9°180.0°
C2C1C6H3123.7°120.0°
C1C2C3H4120.9°120.0°
C1C2C3H5120.9°120.0°
C1C2H4H5117.0°120.1°
C1C2C3C423.4°65.0°
C1C2C3C594.7°175.0°
C1C2C3H6143.5°55.0°
C2C1C6C790.6°175.0°
C2C1C6O1146.3°55.0°
C2C1C6H1426.2°65.0°
C6C1C2C3118.6°175.0°
C6C1C2H42.3°55.0°
C6C1C2H5120.4°65.0°
C1C6C7O1123.0°120.0°
C1C6C7H14116.9°120.0°
C1C6O1H14119.1°120.0°
C1C6O1H13180.0°60.0°
C1C6C7O234.1°115.0°
C1C6C7N2145.1°65.0°
H3C1C2C34.6°55.0°
H3C1C2H4125.5°65.0°
H3C1C2H5116.4°175.0°
H3C1C6C733.1°65.0°
H3C1C6O190.0°175.0°
H3C1C6H14149.9°55.0°
C3C2H4H5117.1°120.0°
C2C3C4C5118.5°120.0°
C2C3C4H6120.5°120.0°
C2C3C5H6122.1°120.0°
C2C3C4H7180.0°60.0°
C2C3C4H860.0°180.0°
C2C3C4H960.0°60.0°
C2C3C5H10180.0°60.0°
C2C3C5H1160.0°180.0°
C2C3C5H1260.0°60.0°
H4C2C3C497.5°55.0°
H4C2C3C5144.4°65.0°
H4C2C3H622.6°175.0°
H5C2C3C4144.3°175.0°
H5C2C3C526.2°55.0°
H5C2C3H695.5°65.0°
C4C3C5H6121.0°120.0°
C3C4H7H8120.0°120.0°
C3C4H7H9120.0°120.0°
C3C4H8H9120.0°120.1°
C4C3C5H1063.1°180.0°
C4C3C5H11176.9°60.0°
C4C3C5H1256.9°60.0°
C5C3C4H761.5°60.0°
C5C3C4H858.5°59.9°
C5C3C4H9178.5°180.0°
C3C5H10H11120.0°120.1°
C3C5H10H12120.0°120.0°
C3C5H11H12120.0°120.0°
H6C3C4H759.5°180.0°
H6C3C4H8179.5°60.1°
H6C3C4H960.5°60.0°
H6C3C5H1057.9°60.0°
H6C3C5H1162.1°60.0°
H6C3C5H12177.9°180.0°
H7C4H8H9120.0°119.9°
H10C5H11H12120.0°120.0°
C7C6O1H14118.9°120.0°
C7C6O1H1358.0°60.0°
C6C7O2N2179.1°180.0°
C6C7N2C8178.8°180.0°
C6C7N2H151.2°0.0°
O1C6C7O288.9°5.0°
O1C6C7N291.9°175.0°
H14C6O1H1360.9°180.0°
H14C6C7O2151.0°125.0°
H14C6C7N228.2°54.9°
O2C7N2C81.9°0.0°
O2C7N2H15178.1°180.0°
C8N2H15C7180.0°180.0°
N2C8C9C10124.9°120.0°
N2C8C9H16119.9°120.0°
N2C8C10H16119.8°120.0°
N2C8C9O319.6°0.1°
N2C8C10C1174.6°60.0°
N2C8C10C12164.8°60.0°
N2C8C10H1744.1°180.0°
N2C8C9N3160.2°180.0°
H15N2C8C9100.7°25.0°
H15N2C8C1021.5°95.0°
H15N2C8H16140.3°145.0°
C9C8C10H16115.4°120.0°
C8C9O3N3179.8°179.9°
C9C8C10C1150.3°180.0°
C9C8C10C1270.4°60.0°
C9C8C10H17169.0°60.0°
C8C9N3C13167.1°180.0°
C8C9N3H2412.9°0.0°
C9C8N2C779.3°155.0°
C10C8C9O3105.3°119.9°
C8C10C11C12122.6°120.0°
C8C10C11H17118.5°120.0°
C8C10C12H17120.5°120.0°
C8C10C11H18180.0°180.0°
C8C10C11H1960.0°60.0°
C8C10C11H2060.0°59.9°
C8C10C12H21180.0°60.0°
C8C10C12H2260.0°180.0°
C8C10C12H2360.0°60.0°
C10C8N2C7158.5°85.0°
C10C8C9N374.9°60.0°
H16C8C9O3139.5°120.0°
H16C8C10C11165.6°60.0°
H16C8C10C1245.0°180.0°
H16C8C10H1775.7°60.0°
H16C8N2C739.7°35.0°
H16C8C9N340.4°60.0°
O3C9N3C1312.7°0.0°
O3C9N3H24167.3°179.9°
C11C10C12H17118.8°120.0°
C10C11H18H19120.0°120.0°
C10C11H18H20120.0°120.0°
C10C11H19H20120.0°119.9°
C11C10C12H2159.4°180.0°
C11C10C12H2260.6°60.0°
C11C10C12H23179.4°60.0°
C12C10C11H1857.4°60.0°
C12C10C11H19177.4°179.9°
C12C10C11H2062.6°60.0°
C10C12H21H22120.0°120.0°
C10C12H21H23120.0°120.0°
C10C12H22H23120.0°120.0°
H17C10C11H1861.4°60.0°
H17C10C11H1958.5°60.0°
H17C10C11H20178.5°179.9°
H17C10C12H2159.5°59.9°
H17C10C12H22179.5°60.0°
H17C10C12H2360.5°180.0°
H18C11H19H20120.0°120.1°
H21C12H22H23120.0°119.9°
C13N3H24C9180.0°180.0°
N3C13C14C15112.5°120.0°
N3C13C14H25128.6°120.1°
N3C13C15H25123.2°120.0°
N3C13C14O417.7°9.9°
N3C13C15C1649.1°66.1°
N3C13C15C1767.2°53.9°
N3C13C15H26173.7°173.9°
N3C13C14N4161.6°170.0°
H24N3C13C1480.8°24.9°
H24N3C13C1528.4°95.0°
H24N3C13H25150.9°145.0°
C14C13C15H25119.3°119.9°
C13C14O4N4179.2°179.9°
C14C13C15C16166.7°173.9°
C14C13C15C1750.4°66.1°
C14C13C15H2668.7°53.8°
C13C14N4C18179.6°175.3°
C13C14N4H330.5°4.7°
C14C13N3C999.2°155.0°
C15C13C14O494.8°110.1°
C13C15C16C17112.5°119.9°
C13C15C16H26124.6°120.0°
C13C15C17H26119.2°120.0°
C13C15C16H27180.0°58.4°
C13C15C16H2860.0°178.4°
C13C15C16H2960.0°61.6°
C13C15C17H30180.0°60.0°
C13C15C17H3160.0°180.0°
C13C15C17H3260.0°60.0°
C15C13N3C9151.7°85.0°
C15C13C14N486.0°70.0°
H25C13C14O4146.3°130.0°
H25C13C15C1674.0°53.9°
H25C13C15C17169.7°173.9°
H25C13C15H2650.6°66.1°
H25C13N3C929.1°35.0°
H25C13C14N433.0°49.9°
O4C14N4C181.3°4.6°
O4C14N4H33178.7°175.3°
C16C15C17H26122.9°120.1°
C15C16H27H28120.0°119.9°
C15C16H27H29120.0°120.0°
C15C16H28H29120.0°120.0°
C16C15C17H3062.1°180.0°
C16C15C17H3157.9°60.0°
C16C15C17H32177.9°60.0°
C17C15C16H2767.5°61.5°
C17C15C16H28172.5°58.4°
C17C15C16H2952.5°178.5°
C15C17H30H31120.0°119.9°
C15C17H30H32120.0°120.0°
C15C17H31H32120.0°119.9°
H26C15C16H2755.4°178.4°
H26C15C16H2864.6°61.6°
H26C15C16H29175.4°58.4°
H26C15C17H3060.8°60.0°
H26C15C17H31179.2°60.0°
H26C15C17H3259.2°180.0°
H27C16H28H29120.0°120.1°
H30C17H31H32120.0°120.1°
C18N4H33C14180.0°180.0°
N4C18C19C20122.4°120.0°
N4C18C19H34118.1°120.0°
N4C18C20H34117.8°120.0°
N4C18C19O541.1°0.0°
N4C18C19O8137.8°180.0°
N4C18C20C21153.2°65.0°
N4C18C20H3585.9°55.0°
N4C18C20H3632.2°175.0°
H33N4C18C1930.5°95.0°
H33N4C18C20155.9°25.0°
H33N4C18H3487.0°145.0°
C19C18C20H34119.6°120.0°
C18C19O5O8178.9°180.0°
C19C18C20C2130.6°175.0°
C19C18C20H35151.5°65.0°
C19C18C20H3690.4°55.0°
C18C19O8H38179.0°180.0°
C19C18N4C14149.5°85.0°
C20C18C19O581.3°120.0°
C20C18C19O899.8°60.0°
C18C20C21H35120.9°120.0°
C18C20C21H36121.0°120.0°
C18C20H35H36117.0°120.0°
C18C20C21O624.0°0.0°
C18C20C21O7154.0°180.0°
C20C18N4C1424.1°155.0°
H34C18C19O5159.1°120.0°
H34C18C19O819.7°60.0°
H34C18C20C2189.0°55.0°
H34C18C20H3531.9°175.0°
H34C18C20H36150.0°65.0°
H34C18N4C1493.0°35.0°
O5C19O8H380.0°0.0°
C21C20H35H36117.0°120.0°
C20C21O6O7177.8°180.0°
C20C21O7H37177.8°180.0°
H35C20C21O697.0°120.0°
H35C20C21O785.0°60.0°
H36C20C21O6145.0°120.0°
H36C20C21O733.1°60.0°
O6C21O7H370.0°0.0°

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon