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PRD_000413

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.36Å1.34ÅAromatic
C1C8Asing1.41Å1.39ÅAromatic
C1H1sing1.08Å1.08Å
C2C3sing1.39Å1.39ÅAromatic
C2Ssing1.76Å1.66Å
C3C4doub1.36Å1.39ÅAromatic
C3H3sing1.08Å1.08Å
C4C4Asing1.40Å1.41ÅAromatic
C4H4sing1.08Å1.08Å
C4AC5doub1.41Å1.40ÅAromatic
C4AC8Asing1.42Å1.42ÅAromatic
C5C6sing1.38Å1.35ÅAromatic
C5Nsing1.39Å1.45Å
C6C7doub1.39Å1.37ÅAromatic
C6H6sing1.08Å1.08Å
C7C8sing1.36Å1.37ÅAromatic
C7H7sing1.08Å1.08Å
C8C8Adoub1.41Å1.39ÅAromatic
C8H8sing1.08Å1.08Å
NCM1sing1.47Å1.49Å
NCM2sing1.47Å1.49Å
CM1HM11sing1.09Å1.10Å
CM1HM12sing1.09Å1.10Å
CM1HM13sing1.09Å1.10Å
CM2HM21sing1.09Å1.10Å
CM2HM22sing1.09Å1.10Å
CM2HM23sing1.09Å1.10Å
SO1Sdoub1.42Å1.61Å
SN1sing1.66Å1.67Å
SO2Sdoub1.42Å1.59Å
N1CAsing1.46Å1.45Å
N1Hsing0.97Å1.00Å
CACsing1.51Å1.51Å
CACBsing1.53Å1.53Å
CAHAsing1.09Å1.10Å
COdoub1.21Å1.24Å
CN2sing1.35Å1.33Å
CBCGsing1.53Å1.50Å
CBHB2sing1.09Å1.10Å
CBHB3sing1.09Å1.10Å
CGCDsing1.51Å1.50Å
CGHG2sing1.09Å1.10Å
CGHG3sing1.09Å1.10Å
CDOE1doub1.21Å1.25Å
CDOE2sing1.34Å1.26Å
OE2HE2sing0.97Å0.95Å
N2CA1sing1.46Å1.45Å
N2H2sing0.97Å1.00Å
CA1C9sing1.51Å1.52Å
CA1HA2sing1.09Å1.10Å
CA1HA3sing1.09Å1.10Å
C9O1doub1.21Å1.25Å
C9N3sing1.35Å1.32Å
N3CA2sing1.46Å1.44Å
N3H5sing0.97Å1.00Å
CA2CCsing1.51Å1.52Å
CA2CB1sing1.53Å1.54Å
CA2HA1sing1.09Å1.10Å
CCO2doub1.21Å1.46Å
CCCEsing1.51Å1.59Å
CB1CG1sing1.53Å1.54Å
CB1HB21sing1.09Å1.10Å
CB1HB31sing1.09Å1.10Å
CG1CD1sing1.53Å1.52Å
CG1HG21sing1.09Å1.10Å
CG1HG31sing1.09Å1.10Å
CD1NEsing1.46Å1.46Å
CD1HD2sing1.09Å1.10Å
CD1HD3sing1.09Å1.10Å
NECZsing1.37Å1.33Å
NEHEsing0.97Å1.00Å
CZNH1sing1.33Å1.33Å
CZNH2doub1.33Å1.32Å
NH1HH11sing0.97Å1.00Å
NH1HH12sing0.97Å1.00Å
NH2HH21sing0.97Å1.00Å
NH2HH22sing0.97Å1.00Å
CEH11sing1.09Å1.10Å
CEH21sing1.09Å1.10Å
CL1CEsing1.80Å1.77Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C8A120.7°119.7°
C2C1H1119.7°120.1°
C1C2C3121.8°120.9°
C1C2S108.7°119.5°
C8AC1H1119.7°120.2°
C1C8AC4A119.5°119.3°
C1C8AC8120.7°121.2°
C3C2S129.4°119.5°
C2C3C4119.7°120.9°
C2C3H3120.1°119.5°
C2SO1S108.1°106.4°
C2SN1100.2°107.2°
C2SO2S110.4°106.4°
C4C3H3120.1°119.6°
C3C4C4A119.1°119.7°
C3C4H4120.5°120.1°
C4AC4H4120.4°120.2°
C4C4AC5122.8°121.2°
C4C4AC8A119.2°119.4°
C5C4AC8A118.0°119.4°
C4AC5C6121.3°119.4°
C4AC5N125.7°120.4°
C4AC8AC8119.8°119.5°
C6C5N112.9°120.3°
C5C6C7120.1°120.7°
C5C6H6120.0°119.6°
C5NCM1118.2°111.0°
C5NCM2117.4°111.0°
C7C6H6119.9°119.6°
C6C7C8121.6°121.1°
C6C7H7119.2°119.5°
C8C7H7119.2°119.5°
C7C8C8A119.2°120.0°
C7C8H8120.4°120.0°
C8AC8H8120.4°120.0°
CM1NCM2124.4°111.0°
NCM1HM11109.5°109.5°
NCM1HM12109.5°109.5°
NCM1HM13109.5°109.5°
NCM2HM21109.5°109.5°
NCM2HM22109.5°109.5°
NCM2HM23109.5°109.5°
HM11CM1HM12109.5°109.5°
HM11CM1HM13109.5°109.4°
HM12CM1HM13109.5°109.5°
HM21CM2HM22109.5°109.5°
HM21CM2HM23109.5°109.5°
HM22CM2HM23109.4°109.5°
O1SSN185.3°106.4°
O1SSO2S111.2°123.2°
N1SO2S137.4°106.4°
SN1CA106.9°120.0°
SN1H110.3°120.0°
CAN1H110.3°120.0°
N1CAC109.1°109.5°
N1CACB111.3°109.4°
N1CAHA108.2°109.5°
CCACB108.8°109.5°
CCAHA110.8°109.5°
CACO120.8°120.0°
CACN2115.5°120.0°
CBCAHA108.5°109.4°
CACBCG114.3°109.5°
CACBHB2107.9°109.5°
CACBHB3107.9°109.5°
OCN2123.6°120.0°
CN2CA1120.6°120.0°
CN2H2119.7°120.0°
CGCBHB2107.9°109.5°
CGCBHB3107.9°109.5°
CBCGCD112.5°109.5°
CBCGHG2108.5°109.4°
CBCGHG3108.5°109.4°
HB2CBHB3111.0°109.4°
CDCGHG2108.5°109.5°
CDCGHG3108.5°109.5°
CGCDOE1117.2°119.9°
CGCDOE2118.3°120.0°
HG2CGHG3110.4°109.4°
OE1CDOE2124.4°120.0°
CDOE2HE2109.5°117.0°
CA1N2H2119.7°120.0°
N2CA1C9108.0°109.5°
N2CA1HA2110.0°109.5°
N2CA1HA3110.0°109.5°
C9CA1HA2110.0°109.5°
C9CA1HA3110.0°109.4°
CA1C9O1121.2°120.0°
CA1C9N3115.7°120.1°
HA2CA1HA3109.0°109.4°
O1C9N3123.1°120.0°
C9N3CA2120.4°120.0°
C9N3H5119.8°119.9°
CA2N3H5119.8°120.0°
N3CA2CC111.2°109.5°
N3CA2CB1109.6°109.5°
N3CA2HA1109.5°109.5°
CCCA2CB1113.0°109.5°
CCCA2HA1105.8°109.5°
CA2CCO2106.9°120.0°
CA2CCCE111.0°120.0°
CB1CA2HA1107.5°109.4°
CA2CB1CG1115.8°109.5°
CA2CB1HB21107.5°109.5°
CA2CB1HB31107.5°109.5°
O2CCCE116.9°120.1°
CCCEH11109.5°109.5°
CCCEH21109.5°109.5°
CCCECL1109.4°109.4°
CG1CB1HB21107.4°109.4°
CG1CB1HB31107.4°109.4°
CB1CG1CD1109.4°109.5°
CB1CG1HG21109.5°109.4°
CB1CG1HG31109.5°109.5°
HB21CB1HB31111.4°109.5°
CD1CG1HG21109.5°109.5°
CD1CG1HG31109.5°109.5°
CG1CD1NE113.8°109.5°
CG1CD1HD2108.0°109.5°
CG1CD1HD3108.1°109.4°
HG21CG1HG31109.5°109.5°
NECD1HD2108.1°109.5°
NECD1HD3108.0°109.4°
CD1NECZ124.0°120.0°
CD1NEHE118.0°120.0°
HD2CD1HD3110.8°109.5°
CZNEHE118.0°120.0°
NECZNH1120.8°120.0°
NECZNH2119.9°120.0°
NH1CZNH2119.3°120.0°
CZNH1HH11120.0°120.0°
CZNH1HH12120.0°119.9°
CZNH2HH21120.0°120.0°
CZNH2HH22120.0°120.0°
HH11NH1HH12120.0°120.0°
HH21NH2HH22120.0°120.0°
H11CEH21109.5°109.5°
H11CECL1109.5°109.5°
H21CECL1109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C8AH1180.0°179.8°
C1C2C3S179.8°180.0°
C1C2C3C40.3°0.1°
C1C2C3H3179.7°180.0°
C2C1C8AC4A0.1°0.0°
C2C1C8AC8180.0°180.0°
C1C2SO1S30.4°156.5°
C1C2SN158.0°90.0°
C1C2SO2S152.2°23.6°
C8AC1C2C30.2°0.0°
C8AC1C2S180.0°180.0°
C1C8AC4AC40.3°0.0°
C1C8AC4AC5179.9°180.0°
C1C8AC4AC8179.9°180.0°
C1C8AC8C7179.9°180.0°
C1C8AC8H80.0°0.1°
H1C1C2C3179.8°179.7°
H1C1C2S0.0°0.2°
H1C1C8AC4A180.0°179.7°
H1C1C8AC80.0°0.2°
C2C3C4H3180.0°179.9°
C2C3C4C4A0.0°0.1°
C2C3C4H4180.0°180.0°
C3C2SO1S149.8°23.5°
C3C2SN1121.8°90.0°
C3C2SO2S28.0°156.4°
SC2C3C4180.0°179.9°
SC2C3H30.0°0.0°
C2SO1SN199.2°114.1°
C2SO1SO2S121.3°122.9°
C2SN1O2S135.9°113.5°
C2SN1CA99.5°65.1°
C2SN1H20.5°114.8°
C3C4C4AH4180.0°179.9°
C3C4C4AC5180.0°180.0°
C3C4C4AC8A0.2°0.1°
H3C3C4C4A180.0°180.0°
H3C3C4H40.0°0.1°
C4C4AC5C8A179.8°179.9°
C4C4AC5C6180.0°180.0°
C4C4AC5N0.5°0.0°
C4C4AC8AC8179.8°180.0°
H4C4C4AC50.0°0.1°
H4C4C4AC8A179.8°180.0°
C4AC5C6N179.6°180.0°
C4AC5C6C70.4°0.1°
C4AC5C6H6179.7°180.0°
C5C4AC8AC80.0°0.1°
C4AC5NCM174.8°120.0°
C4AC5NCM2106.9°116.1°
C8AC4AC5C60.2°0.1°
C8AC4AC5N179.7°179.9°
C4AC8AC8C70.0°0.1°
C4AC8AC8H8180.0°179.9°
C5C6C7H6180.0°179.9°
C5C6C7C80.4°0.1°
C5C6C7H7179.6°179.9°
C6C5NCM1105.6°60.0°
C6C5NCM272.7°64.0°
NC5C6C7180.0°179.9°
NC5C6H60.0°0.0°
C5NCM1CM2178.2°124.0°
C5NCM1HM11180.0°60.0°
C5NCM1HM1260.0°180.0°
C5NCM1HM1360.0°59.9°
C5NCM2HM21180.0°60.0°
C5NCM2HM2260.0°180.0°
C5NCM2HM2360.0°60.0°
C6C7C8H7180.0°180.0°
C6C7C8C8A0.2°0.0°
C6C7C8H8179.8°179.9°
H6C6C7C8179.6°180.0°
H6C6C7H70.4°0.0°
C7C8C8AH8180.0°179.9°
H7C7C8C8A179.8°180.0°
H7C7C8H80.2°0.1°
NCM1HM11HM12120.0°120.0°
NCM1HM11HM13120.0°120.0°
NCM1HM12HM13120.0°120.0°
CM1NCM2HM211.8°176.0°
CM1NCM2HM22121.8°56.0°
CM1NCM2HM23118.2°64.0°
CM2NCM1HM111.8°64.0°
CM2NCM1HM12118.1°56.0°
CM2NCM1HM13121.8°176.1°
NCM2HM21HM22120.0°120.0°
NCM2HM21HM23120.0°120.0°
NCM2HM22HM23120.0°120.0°
HM11CM1HM12HM13120.0°120.0°
HM21CM2HM22HM23120.0°120.0°
O1SSN1O2S116.5°132.9°
O1SSN1CA153.0°48.5°
O1SSN1H87.0°131.7°
SN1CAH120.0°179.9°
SN1CAC77.2°114.4°
SN1CACB162.7°125.6°
SN1CAHA43.5°5.7°
O2SSN1CA36.4°178.6°
O2SSN1H156.4°1.3°
N1CACCB121.7°120.0°
N1CACHA119.1°120.0°
N1CACBHA119.0°119.9°
N1CACO30.9°0.1°
N1CACN2145.8°180.0°
N1CACBCG70.7°65.3°
N1CACBHB249.3°54.7°
N1CACBHB3169.4°174.6°
HN1CAC162.8°65.5°
HN1CACB42.7°54.5°
HN1CAHA76.5°174.4°
CCACBHA120.7°120.1°
CACON2176.5°179.9°
CCACBCG169.0°174.7°
CCACBHB271.0°65.3°
CCACBHB349.1°54.6°
CACN2CA1177.4°180.0°
CACN2H22.5°0.0°
CBCACO90.7°120.1°
CBCACN292.5°60.0°
CACBCGHB2120.0°120.0°
CACBCGHB3120.0°120.1°
CACBHB2HB3118.0°120.0°
CACBCGCD113.8°175.6°
CACBCGHG2126.2°64.4°
CACBCGHG36.2°55.5°
HACACO150.0°120.0°
HACACN226.7°59.9°
HACACBCG48.4°54.6°
HACACBHB2168.4°174.6°
HACACBHB371.6°65.5°
OCN2CA15.9°0.1°
OCN2H2174.1°179.9°
CN2CA1H2180.0°180.0°
CN2CA1C972.8°180.0°
CN2CA1HA247.2°60.0°
CN2CA1HA3167.2°60.0°
CGCBHB2HB3118.0°120.0°
CBCGCDHG2120.0°120.0°
CBCGCDHG3120.0°120.0°
CBCGHG2HG3118.8°119.9°
CBCGCDOE178.5°0.0°
CBCGCDOE2101.7°180.0°
HB2CBCGCD6.2°55.5°
HB2CBCGHG2113.8°175.6°
HB2CBCGHG3126.2°64.5°
HB3CBCGCD126.2°64.4°
HB3CBCGHG26.2°55.7°
HB3CBCGHG3113.8°175.6°
CDCGHG2HG3118.8°120.0°
CGCDOE1OE2179.7°179.9°
CGCDOE2HE2179.7°180.0°
HG2CGCDOE1161.5°120.0°
HG2CGCDOE218.3°59.9°
HG3CGCDOE141.5°120.0°
HG3CGCDOE2138.2°60.0°
OE1CDOE2HE20.0°0.1°
N2CA1C9HA2120.0°120.1°
N2CA1C9HA3120.0°120.0°
N2CA1HA2HA3120.6°120.0°
N2CA1C9O19.4°0.0°
N2CA1C9N3170.4°180.0°
H2N2CA1C9107.2°0.0°
H2N2CA1HA2132.8°120.1°
H2N2CA1HA312.8°120.0°
C9CA1HA2HA3120.6°119.9°
CA1C9O1N3179.8°179.9°
CA1C9N3CA2179.4°180.0°
CA1C9N3H50.6°0.0°
HA2CA1C9O1129.4°120.0°
HA2CA1C9N350.4°59.9°
HA3CA1C9O1110.6°120.1°
HA3CA1C9N369.6°60.0°
O1C9N3CA20.5°0.0°
O1C9N3H5179.5°180.0°
C9N3CA2H5180.0°180.0°
C9N3CA2CC138.9°85.0°
C9N3CA2CB195.4°155.0°
C9N3CA2HA122.3°35.0°
N3CA2CCCB1123.7°120.0°
N3CA2CCHA1118.8°120.0°
N3CA2CB1HA1119.0°120.0°
N3CA2CCO2154.5°15.0°
N3CA2CCCE25.9°165.0°
N3CA2CB1CG162.0°65.0°
N3CA2CB1HB2158.1°55.0°
N3CA2CB1HB31178.0°175.0°
H5N3CA2CC41.1°95.0°
H5N3CA2CB184.6°25.0°
H5N3CA2HA1157.7°144.9°
CCCA2CB1HA1116.4°120.0°
CA2CCO2CE125.1°180.0°
CCCA2CB1CG1173.4°175.0°
CCCA2CB1HB2166.6°65.0°
CCCA2CB1HB3153.4°55.0°
CA2CCCEH11170.0°60.0°
CA2CCCEH2150.0°60.0°
CA2CCCECL170.0°180.0°
CB1CA2CCO281.8°105.0°
CB1CA2CCCE149.7°75.0°
CA2CB1CG1HB21120.0°120.0°
CA2CB1CG1HB31120.0°120.1°
CA2CB1HB21HB31117.4°120.1°
CA2CB1CG1CD1178.3°180.0°
CA2CB1CG1HG2158.3°60.0°
CA2CB1CG1HG3161.7°60.0°
HA1CA2CCO235.6°135.1°
HA1CA2CCCE92.9°45.0°
HA1CA2CB1CG157.0°55.0°
HA1CA2CB1HB21177.0°175.0°
HA1CA2CB1HB3163.0°65.0°
O2CCCEH1167.0°120.0°
O2CCCEH21173.0°119.9°
O2CCCECL152.9°0.0°
CCCEH11H21120.0°120.1°
CCCEH11CL1120.0°120.0°
CCCEH21CL1120.0°119.9°
CG1CB1HB21HB31117.4°120.0°
CB1CG1CD1HG21120.0°120.0°
CB1CG1CD1HG31120.0°120.0°
CB1CG1HG21HG31120.0°120.0°
CB1CG1CD1NE176.7°180.0°
CB1CG1CD1HD263.3°60.0°
CB1CG1CD1HD356.7°60.0°
HB21CB1CG1CD161.7°60.0°
HB21CB1CG1HG21178.3°180.0°
HB21CB1CG1HG3158.3°60.0°
HB31CB1CG1CD158.3°60.0°
HB31CB1CG1HG2161.8°60.0°
HB31CB1CG1HG31178.2°180.0°
CD1CG1HG21HG31120.0°120.0°
CG1CD1NEHD2120.0°120.0°
CG1CD1NEHD3120.0°120.0°
CG1CD1HD2HD3118.2°120.0°
CG1CD1NECZ173.6°180.0°
CG1CD1NEHE6.4°0.0°
HG21CG1CD1NE56.7°60.0°
HG21CG1CD1HD2176.7°180.0°
HG21CG1CD1HD363.3°60.0°
HG31CG1CD1NE63.3°60.0°
HG31CG1CD1HD256.7°60.0°
HG31CG1CD1HD3176.7°180.0°
NECD1HD2HD3118.2°120.0°
CD1NECZHE180.0°180.0°
CD1NECZNH10.0°0.0°
CD1NECZNH2178.7°180.0°
HD2CD1NECZ53.6°60.0°
HD2CD1NEHE126.4°120.0°
HD3CD1NECZ66.3°60.0°
HD3CD1NEHE113.6°120.0°
NECZNH1NH2178.7°180.0°
NECZNH1HH11178.7°0.0°
NECZNH1HH121.4°180.0°
NECZNH2HH21178.7°180.0°
NECZNH2HH221.3°0.0°
HENECZNH1179.9°180.0°
HENECZNH21.3°0.0°
CZNH1HH11HH12180.0°180.0°
NH1CZNH2HH210.0°0.0°
NH1CZNH2HH22180.0°180.0°
NH2CZNH1HH110.0°180.0°
NH2CZNH1HH12180.0°0.0°
CZNH2HH21HH22180.0°180.0°
H11CEH21CL1120.0°120.0°

223532

PDB entries from 2024-08-07

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