Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_000409

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2doub1.38Å1.42ÅAromatic
C1C5sing1.38Å1.42ÅAromatic
C1H1sing1.08Å1.08Å
C2C3sing1.38Å1.41ÅAromatic
C2H2sing1.08Å1.08Å
C3C4doub1.38Å1.41ÅAromatic
C3C6sing1.51Å1.48Å
C4C8sing1.39Å1.40ÅAromatic
C4H3sing1.08Å1.08Å
C5C8doub1.39Å1.41ÅAromatic
C5H4sing1.08Å1.08Å
C6O1sing1.45Å1.44Å
C6H5sing1.09Å1.10Å
C6H6sing1.09Å1.10Å
O1C7sing1.35Å1.30Å
C7O2doub1.22Å1.38Å
N1C8sing1.40Å1.35Å
N1H7sing0.97Å1.00Å
N1H8sing0.97Å1.00Å
N2C9sing1.47Å1.41Å
N2H9sing0.97Å1.00Å
C9C10sing1.51Å1.49Å
C9C11sing1.53Å1.56Å
C9H10sing1.09Å1.10Å
C10O3doub1.21Å1.26Å
C11C12sing1.51Å1.53Å
C11H11sing1.09Å1.10Å
C11H12sing1.09Å1.10Å
C12C13doub1.38Å1.42ÅAromatic
C12C14sing1.38Å1.42ÅAromatic
C13C15sing1.38Å1.38ÅAromatic
C13H13sing1.08Å1.08Å
C14C16doub1.38Å1.42ÅAromatic
C14H14sing1.08Å1.08Å
C15C17doub1.39Å1.40ÅAromatic
C15H15sing1.08Å1.08Å
C16C17sing1.39Å1.43ÅAromatic
C16H16sing1.08Å1.08Å
C17O4sing1.36Å1.40Å
O4P1sing1.61Å1.52Å
P1O5doub1.48Å1.44Å
P1O6sing1.61Å1.45Å
P1O7sing1.61Å1.55Å
O6H17sing0.97Å0.95Å
O7H18sing0.97Å0.95Å
N3C18sing1.47Å1.43Å
N3H19sing0.97Å1.00Å
C18C19sing1.53Å1.55Å
C18C20sing1.51Å1.55Å
C18C21sing1.53Å1.57Å
C19H20sing1.09Å1.10Å
C19H21sing1.09Å1.10Å
C19H22sing1.09Å1.10Å
C20O8doub1.21Å1.25Å
C21C22sing1.51Å1.53Å
C21H23sing1.09Å1.10Å
C21H24sing1.09Å1.10Å
C22C23doub1.38Å1.42ÅAromatic
C22C24sing1.38Å1.40ÅAromatic
C23C25sing1.38Å1.40ÅAromatic
C23H25sing1.08Å1.08Å
C24C26doub1.38Å1.42ÅAromatic
C24H26sing1.08Å1.08Å
C25C27doub1.39Å1.41ÅAromatic
C25H27sing1.08Å1.08Å
C26C27sing1.39Å1.40ÅAromatic
C26H28sing1.08Å1.08Å
C27O9sing1.36Å1.41Å
O9P2sing1.61Å1.66Å
P2O10doub1.48Å1.47Å
P2O11sing1.61Å1.48Å
P2O12sing1.61Å1.49Å
O11H29sing0.97Å0.95Å
O12H30sing0.97Å0.95Å
N4C28sing1.47Å1.45Å
N4H31sing0.97Å1.00Å
C28C29sing1.51Å1.53Å
C28C30sing1.53Å1.55Å
C28H32sing1.09Å1.10Å
C29O13doub1.21Å1.27Å
C29O15sing1.34Å1.23Å
C30C31sing1.51Å1.58Å
C30H33sing1.09Å1.10Å
C30H34sing1.09Å1.10Å
C31O14doub1.21Å1.19Å
C31N5sing1.35Å1.30Å
N5H35sing0.97Å1.00Å
N5H36sing0.97Å1.00Å
O15H37sing0.97Å0.95Å
C7N2sing1.35Å1.31Å
C10N3sing1.35Å1.30Å
C20N4sing1.35Å1.32Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1C5120.0°120.1°
C2C1H1120.0°119.9°
C1C2C3118.7°120.1°
C1C2H2120.6°120.0°
C5C1H1120.0°120.0°
C1C5C8119.9°119.9°
C1C5H4120.0°120.0°
C3C2H2120.6°119.9°
C2C3C4121.1°120.1°
C2C3C6122.3°120.0°
C4C3C6116.6°119.9°
C3C4C8120.3°119.9°
C3C4H3119.9°120.0°
C3C6O1122.0°109.5°
C3C6H5106.2°109.5°
C3C6H6106.3°109.5°
C8C4H3119.9°120.1°
C4C8C5120.0°119.8°
C4C8N1119.0°120.0°
C8C5H4120.1°120.0°
C5C8N1121.0°120.1°
O1C6H5106.3°109.4°
O1C6H6106.2°109.5°
C6O1C7129.3°117.0°
H5C6H6109.5°109.4°
O1C7O2124.2°120.0°
O1C7N2110.9°120.0°
O2C7N2119.7°120.0°
C8N1H7109.5°120.0°
C8N1H8109.5°120.0°
H7N1H8109.5°120.0°
C9N2H9116.4°120.0°
N2C9C10101.4°109.5°
N2C9C11113.0°109.4°
N2C9H10112.8°109.4°
C9N2C7127.3°120.0°
H9N2C7116.4°120.0°
C10C9C11107.1°109.5°
C10C9H10111.5°109.5°
C9C10O3124.1°120.0°
C9C10N3109.7°120.0°
C11C9H10110.6°109.5°
C9C11C12112.2°109.5°
C9C11H11108.8°109.5°
C9C11H12108.8°109.5°
O3C10N3125.8°120.0°
C12C11H11108.8°109.5°
C12C11H12108.8°109.5°
C11C12C13118.5°119.9°
C11C12C14121.3°120.0°
H11C11H12109.5°109.5°
C13C12C14120.2°120.1°
C12C13C15120.5°120.0°
C12C13H13119.7°120.0°
C12C14C16120.6°120.1°
C12C14H14119.7°119.9°
C15C13H13119.8°120.0°
C13C15C17118.5°120.0°
C13C15H15120.7°120.0°
C16C14H14119.7°120.0°
C14C16C17116.2°120.0°
C14C16H16121.9°120.0°
C17C15H15120.7°120.0°
C15C17C16123.9°119.9°
C15C17O4117.6°120.1°
C17C16H16121.9°120.0°
C16C17O4118.4°120.0°
C17O4P1127.3°114.0°
O4P1O5106.4°109.5°
O4P1O6113.5°109.5°
O4P1O7108.5°109.5°
O5P1O6109.4°109.5°
O5P1O7108.3°109.5°
O6P1O7110.5°109.5°
P1O6H17109.5°114.0°
P1O7H18109.5°114.0°
C18N3H19119.1°120.0°
N3C18C19110.7°109.5°
N3C18C20112.7°109.5°
N3C18C21102.0°109.4°
C18N3C10121.8°120.0°
H19N3C10119.1°120.0°
C19C18C20120.0°109.5°
C19C18C21102.4°109.5°
C18C19H20109.5°109.5°
C18C19H21109.5°109.5°
C18C19H22109.5°109.5°
C20C18C21106.7°109.5°
C18C20O8120.6°120.0°
C18C20N4118.2°120.0°
C18C21C22115.6°109.5°
C18C21H23107.9°109.5°
C18C21H24107.9°109.5°
H20C19H21109.5°109.5°
H20C19H22109.4°109.5°
H21C19H22109.5°109.4°
O8C20N4121.2°120.0°
C22C21H23107.9°109.5°
C22C21H24107.9°109.5°
C21C22C23120.0°119.9°
C21C22C24119.8°119.9°
H23C21H24109.5°109.4°
C23C22C24120.2°120.1°
C22C23C25119.1°120.1°
C22C23H25120.5°120.0°
C22C24C26122.0°120.1°
C22C24H26119.0°120.0°
C25C23H25120.5°120.0°
C23C25C27119.5°119.9°
C23C25H27120.3°120.0°
C26C24H26119.0°119.9°
C24C26C27116.0°119.9°
C24C26H28122.0°120.0°
C27C25H27120.2°120.1°
C25C27C26123.3°119.9°
C25C27O9120.6°120.0°
C27C26H28122.0°120.0°
C26C27O9116.1°120.1°
C27O9P2121.0°114.0°
O9P2O10104.9°109.5°
O9P2O11109.1°109.4°
O9P2O12110.1°109.5°
O10P2O11114.6°109.4°
O10P2O12110.0°109.5°
O11P2O12108.1°109.5°
P2O11H29109.5°114.0°
P2O12H30109.5°114.0°
C28N4H31120.4°120.0°
N4C28C29109.0°109.5°
N4C28C30111.5°109.5°
N4C28H32110.0°109.4°
C28N4C20119.1°120.0°
H31N4C20120.4°120.0°
C29C28C30109.0°109.5°
C29C28H32108.8°109.5°
C28C29O13121.4°120.0°
C28C29O15116.6°120.0°
C30C28H32108.5°109.5°
C28C30C31113.1°109.5°
C28C30H33108.5°109.5°
C28C30H34108.6°109.5°
O13C29O15122.0°120.0°
C29O15H37109.5°117.0°
C31C30H33108.6°109.4°
C31C30H34108.6°109.4°
C30C31O14121.1°120.0°
C30C31N5116.9°120.0°
H33C30H34109.5°109.4°
O14C31N5122.0°120.0°
C31N5H35120.0°120.0°
C31N5H36120.0°120.0°
H35N5H36120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1C5H1180.0°179.8°
C1C2C3H2180.0°179.9°
C1C2C3C40.9°0.0°
C1C2C3C6178.6°180.0°
C2C1C5C80.5°0.0°
C2C1C5H4179.5°180.0°
C5C1C2C31.2°0.0°
C5C1C2H2178.9°180.0°
C1C5C8C40.5°0.0°
C1C5C8H4180.0°180.0°
C1C5C8N1179.3°180.0°
H1C1C2C3178.8°179.7°
H1C1C2H21.1°0.2°
H1C1C5C8179.6°179.7°
H1C1C5H40.5°0.2°
C2C3C4C6179.6°179.9°
C2C3C4C80.0°0.0°
C2C3C4H3180.0°179.9°
C2C3C6O192.1°90.0°
C2C3C6H5146.2°150.0°
C2C3C6H629.6°30.0°
H2C2C3C4179.1°180.0°
H2C2C3C61.4°0.1°
C3C4C8H3180.0°180.0°
C3C4C8C50.7°0.0°
C4C3C6O188.3°90.0°
C4C3C6H533.4°30.0°
C4C3C6H6150.0°149.9°
C3C4C8N1179.1°180.0°
C6C3C4C8179.6°180.0°
C6C3C4H30.4°0.0°
C3C6O1H5121.7°120.0°
C3C6O1H6121.7°120.0°
C3C6H5H6114.3°120.0°
C3C6O1C71.1°180.0°
C4C8C5N1179.8°180.0°
C4C8C5H4179.5°180.0°
C4C8N1H7180.0°0.0°
C4C8N1H860.0°179.9°
H3C4C8C5179.2°179.9°
H3C4C8N10.9°0.0°
C5C8N1H70.2°179.9°
C5C8N1H8120.2°0.0°
H4C5C8N10.7°0.0°
O1C6H5H6114.3°120.0°
C6O1C7O232.4°0.1°
C6O1C7N2173.6°180.0°
H5C6O1C7122.9°60.0°
H6C6O1C7120.6°59.9°
O1C7O2N2151.9°179.9°
O1C7N2C9171.7°179.9°
O1C7N2H98.3°0.1°
O2C7N2C932.9°0.0°
O2C7N2H9147.0°179.9°
C8N1H7H8120.0°179.9°
C9N2H9C7180.0°179.9°
N2C9C10C11118.6°119.9°
N2C9C10H10120.3°120.0°
N2C9C11H10127.4°120.0°
N2C9C10O341.5°0.0°
N2C9C11C1272.0°65.0°
N2C9C11H1148.4°55.0°
N2C9C11H12167.6°175.0°
N2C9C10N3131.5°179.9°
H9N2C9C1016.2°24.9°
H9N2C9C1198.1°95.1°
H9N2C9H10135.6°144.9°
C10C9C11H10121.7°120.1°
C9C10O3N3171.8°179.9°
C10C9C11C12177.1°175.0°
C10C9C11H1162.4°65.0°
C10C9C11H1256.7°55.0°
C9C10N3C18177.8°180.0°
C9C10N3H192.2°0.1°
C10C9N2C7163.8°155.0°
C11C9C10O377.1°119.9°
C9C11C12H11120.4°120.0°
C9C11C12H12120.4°120.0°
C9C11H11H12118.7°120.0°
C9C11C12C1397.6°90.0°
C9C11C12C1481.1°90.3°
C11C9N2C781.9°85.0°
C11C9C10N3109.9°60.0°
H10C9C10O3161.7°120.0°
H10C9C11C1255.4°54.9°
H10C9C11H11175.8°174.9°
H10C9C11H1265.0°65.1°
H10C9N2C744.4°34.9°
H10C9C10N311.2°60.1°
O3C10N3C185.0°0.1°
O3C10N3H19175.0°180.0°
C12C11H11H12118.7°120.0°
C11C12C13C14178.7°179.7°
C11C12C13C15178.7°180.0°
C11C12C13H131.3°0.0°
C11C12C14C16179.3°180.0°
C11C12C14H140.7°0.0°
H11C11C12C1322.8°30.0°
H11C11C12C14158.5°149.7°
H12C11C12C13142.0°150.0°
H12C11C12C1439.3°29.8°
C12C13C15H13180.0°180.0°
C13C12C14C160.6°0.3°
C13C12C14H14179.4°179.8°
C12C13C15C170.3°0.0°
C12C13C15H15179.7°180.0°
C14C12C13C150.0°0.2°
C14C12C13H13180.0°179.7°
C12C14C16H14180.0°180.0°
C12C14C16C170.8°0.0°
C12C14C16H16179.2°179.9°
C13C15C17H15180.0°180.0°
C13C15C17C160.1°0.3°
C13C15C17O4179.7°180.0°
H13C13C15C17179.7°180.0°
H13C13C15H150.3°0.0°
C14C16C17C150.5°0.3°
C14C16C17H16180.0°179.9°
C14C16C17O4179.8°180.0°
H14C14C16C17179.2°180.0°
H14C14C16H160.8°0.1°
C15C17C16O4179.7°179.7°
C15C17C16H16179.5°179.6°
C15C17O4P1144.0°90.0°
H15C15C17C16179.9°179.7°
H15C15C17O40.3°0.0°
C16C17O4P136.2°89.8°
H16C16C17O40.2°0.1°
C17O4P1O5136.1°55.0°
C17O4P1O615.8°175.0°
C17O4P1O7107.5°65.0°
O4P1O5O6122.9°120.0°
O4P1O5O7116.5°120.1°
O4P1O6O7122.2°120.0°
O4P1O6H17118.6°180.0°
O4P1O7H18115.1°60.0°
O5P1O6O7119.2°120.0°
O5P1O6H170.0°60.0°
O5P1O7H180.0°180.0°
O6P1O7H18119.9°60.0°
O7P1O6H17119.2°60.0°
C18N3H19C10180.0°179.9°
N3C18C19C20134.1°120.0°
N3C18C19C21108.1°120.0°
N3C18C20C21111.1°120.0°
N3C18C19H20180.0°60.0°
N3C18C19H2160.0°180.0°
N3C18C19H2260.0°60.0°
N3C18C20O8142.5°145.0°
N3C18C21C22169.4°180.0°
N3C18C21H2348.5°60.0°
N3C18C21H2469.7°60.0°
N3C18C20N434.6°35.0°
H19N3C18C1994.8°119.9°
H19N3C18C20127.6°120.0°
H19N3C18C2113.5°0.0°
C19C18C20C21115.6°120.0°
C18C19H20H21120.0°120.0°
C18C19H20H22120.0°120.0°
C18C19H21H22120.0°120.0°
C19C18C20O89.2°25.0°
C19C18C21C2254.7°60.0°
C19C18C21H2366.2°60.0°
C19C18C21H24175.6°180.0°
C19C18N3C1085.2°60.0°
C19C18C20N4167.8°155.0°
C20C18C19H2045.9°180.0°
C20C18C19H2174.1°59.9°
C20C18C19H22165.9°60.0°
C18C20O8N4177.0°180.0°
C20C18C21C2272.2°60.0°
C20C18C21H23166.9°180.0°
C20C18C21H2448.7°60.0°
C18C20N4C28179.0°180.0°
C18C20N4H311.0°0.0°
C20C18N3C1052.4°60.0°
C21C18C19H2071.9°60.0°
C21C18C19H21168.1°60.1°
C21C18C19H2248.1°180.0°
C21C18C20O8106.4°95.0°
C18C21C22H23120.9°120.0°
C18C21C22H24120.9°120.0°
C18C21H23H24117.2°120.0°
C18C21C22C2398.1°90.0°
C18C21C22C2481.1°90.3°
C21C18N3C10166.5°180.0°
C21C18C20N476.6°85.0°
H20C19H21H22119.9°120.0°
O8C20N4C282.0°0.0°
O8C20N4H31178.0°180.0°
C22C21H23H24117.2°120.0°
C21C22C23C24179.2°179.7°
C21C22C23C25179.2°180.0°
C21C22C23H250.8°0.1°
C21C22C24C26179.3°180.0°
C21C22C24H260.7°0.0°
H23C21C22C2322.8°30.0°
H23C21C22C24158.0°149.7°
H24C21C22C23141.0°149.9°
H24C21C22C2439.8°29.7°
C22C23C25H25180.0°179.9°
C23C22C24C260.2°0.3°
C23C22C24H26179.9°179.7°
C22C23C25C270.2°0.0°
C22C23C25H27179.8°180.0°
C24C22C23C250.0°0.3°
C24C22C23H25180.0°179.7°
C22C24C26H26180.0°180.0°
C22C24C26C270.0°0.0°
C22C24C26H28180.0°179.9°
C23C25C27H27180.0°180.0°
C23C25C27C260.4°0.3°
C23C25C27O9179.6°180.0°
H25C23C25C27179.8°180.0°
H25C23C25H270.2°0.0°
C24C26C27C250.3°0.3°
C24C26C27H28180.0°180.0°
C24C26C27O9179.7°180.0°
H26C24C26C27180.0°180.0°
H26C24C26H280.0°0.0°
C25C27C26O9180.0°179.7°
C25C27C26H28179.7°179.7°
C25C27O9P2133.1°90.0°
H27C25C27C26179.6°179.7°
H27C25C27O90.4°0.0°
C26C27O9P246.9°89.7°
H28C26C27O90.3°0.0°
C27O9P2O10172.8°55.0°
C27O9P2O1149.6°175.0°
C27O9P2O1268.9°65.0°
O9P2O10O11119.6°119.9°
O9P2O10O12118.4°120.0°
O9P2O11O12119.7°120.0°
O9P2O11H29117.2°180.0°
O9P2O12H30115.2°60.0°
O10P2O11O12123.1°120.0°
O10P2O11H290.0°60.0°
O10P2O12H300.0°180.0°
O11P2O12H30125.7°60.0°
O12P2O11H29123.1°60.0°
C28N4H31C20180.0°180.0°
N4C28C29C30121.9°120.0°
N4C28C29H32119.9°119.9°
N4C28C30H32121.3°120.0°
N4C28C29O1324.7°0.0°
N4C28C29O15156.1°180.0°
N4C28C30C3159.7°65.0°
N4C28C30H33179.8°55.0°
N4C28C30H3460.9°175.0°
H31N4C28C2977.1°95.0°
H31N4C28C3043.4°25.0°
H31N4C28H32163.8°145.1°
C29C28C30H32118.4°120.0°
C28C29O13O15179.1°180.0°
C29C28C30C3160.7°175.0°
C29C28C30H3359.8°65.0°
C29C28C30H34178.8°55.0°
C28C29O15H37179.2°180.0°
C29C28N4C20103.0°85.0°
C30C28C29O13146.6°120.0°
C30C28C29O1534.2°60.0°
C28C30C31H33120.5°120.0°
C28C30C31H34120.5°120.0°
C28C30H33H34118.3°120.0°
C28C30C31O1429.1°0.0°
C28C30C31N5152.5°180.0°
C30C28N4C20136.6°155.0°
H32C28C29O1395.2°119.9°
H32C28C29O1584.0°60.0°
H32C28C30C31179.1°55.0°
H32C28C30H3358.5°175.0°
H32C28C30H3460.4°65.0°
H32C28N4C2016.2°35.0°
O13C29O15H370.0°0.0°
C31C30H33H34118.4°119.9°
C30C31O14N5178.2°180.0°
C30C31N5H35178.3°0.0°
C30C31N5H361.7°180.0°
H33C30C31O14149.6°120.0°
H33C30C31N532.0°60.0°
H34C30C31O1491.4°120.0°
H34C30C31N586.9°60.0°
O14C31N5H350.0°180.0°
O14C31N5H36180.0°0.0°
C31N5H35H36179.9°180.0°

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon