Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_000406

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1O1doub1.21Å1.24Å
C1C2sing1.51Å1.51Å
C2H1sing1.09Å1.10Å
C2H2sing1.09Å1.10Å
C2H3sing1.09Å1.10Å
N1C3sing1.46Å1.46Å
N1H4sing0.97Å1.00Å
C3C4sing1.53Å1.53Å
C3C13sing1.51Å1.53Å
C3H5sing1.09Å1.10Å
C4C5sing1.51Å1.49Å
C4H6sing1.09Å1.10Å
C4H7sing1.09Å1.10Å
C5C6doub1.38Å1.40ÅAromatic
C5C8sing1.38Å1.39ÅAromatic
C6C7sing1.38Å1.41ÅAromatic
C6H8sing1.08Å1.08Å
C7C10doub1.38Å1.39ÅAromatic
C7H9sing1.08Å1.08Å
C8C9doub1.38Å1.41ÅAromatic
C8H10sing1.08Å1.08Å
C9C10sing1.38Å1.39ÅAromatic
C9H11sing1.08Å1.08Å
C10C11sing1.51Å1.52Å
C11C12sing1.51Å1.52Å
C11H12sing1.09Å1.10Å
C11H13sing1.09Å1.10Å
C12O2sing1.34Å1.25Å
C12O3doub1.21Å1.24Å
O2H14sing0.97Å0.95Å
C13O4doub1.21Å1.24Å
N2C14sing1.46Å1.45Å
N2H15sing0.97Å1.00Å
C14C15sing1.51Å1.54Å
C14C16sing1.53Å1.53Å
C14H16sing1.09Å1.10Å
C15O5doub1.21Å1.24Å
C16C17sing1.53Å1.51Å
C16H17sing1.09Å1.10Å
C16H18sing1.09Å1.10Å
C17C18sing1.51Å1.53Å
C17H19sing1.09Å1.10Å
C17H20sing1.09Å1.10Å
C18O6doub1.21Å1.24Å
C18O7sing1.34Å1.24Å
O7H21sing0.97Å0.95Å
N3C19sing1.46Å1.45Å
N3H22sing0.97Å1.00Å
C19C20sing1.51Å1.52Å
C19C21sing1.53Å1.54Å
C19H23sing1.09Å1.10Å
C20O8doub1.21Å1.24Å
C21C22sing1.53Å1.51Å
C21H24sing1.09Å1.10Å
C21H25sing1.09Å1.10Å
C22C23sing1.51Å1.53Å
C22H26sing1.09Å1.10Å
C22H27sing1.09Å1.10Å
C23O9doub1.21Å1.24Å
C23O10sing1.34Å1.24Å
O10H28sing0.97Å0.95Å
N4C24sing1.47Å1.45Å
N4H29sing0.97Å1.00Å
C24C25sing1.51Å1.56Å
C24C26sing1.53Å1.55Å
C24H30sing1.09Å1.10Å
C25O11doub1.21Å1.25Å
C25O12sing1.34Å1.25Å
C26C27sing1.53Å1.53Å
C26C28sing1.53Å1.53Å
C26H31sing1.09Å1.10Å
C27C29sing1.53Å1.52Å
C27H32sing1.09Å1.10Å
C27H33sing1.09Å1.10Å
C28H34sing1.09Å1.10Å
C28H35sing1.09Å1.10Å
C28H36sing1.09Å1.10Å
C29H37sing1.09Å1.10Å
C29H38sing1.09Å1.10Å
C29H39sing1.09Å1.10Å
O12H40sing0.97Å0.95Å
C1N1sing1.35Å1.34Å
C13N2sing1.35Å1.32Å
C15N3sing1.35Å1.33Å
C20N4sing1.35Å1.33Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C1C2119.8°120.0°
O1C1N1124.0°120.0°
C1C2H1109.5°109.4°
C1C2H2109.5°109.5°
C1C2H3109.4°109.5°
C2C1N1116.0°120.0°
H1C2H2109.5°109.5°
H1C2H3109.4°109.5°
H2C2H3109.5°109.5°
C3N1H4117.8°120.0°
N1C3C4108.9°109.5°
N1C3C13115.8°109.4°
N1C3H5108.1°109.5°
C3N1C1124.3°120.0°
H4N1C1117.9°120.0°
C4C3C13109.3°109.5°
C4C3H5107.2°109.5°
C3C4C5111.6°109.5°
C3C4H6108.9°109.5°
C3C4H7108.9°109.5°
C13C3H5107.2°109.5°
C3C13O4121.7°120.0°
C3C13N2114.9°120.0°
C5C4H6108.9°109.5°
C5C4H7108.9°109.5°
C4C5C6120.4°120.0°
C4C5C8121.1°120.0°
H6C4H7109.5°109.4°
C6C5C8118.5°120.0°
C5C6C7120.7°120.0°
C5C6H8119.6°120.0°
C5C8C9120.4°120.0°
C5C8H10119.8°120.1°
C7C6H8119.7°120.0°
C6C7C10121.0°120.0°
C6C7H9119.5°120.0°
C10C7H9119.5°120.0°
C7C10C9117.9°120.0°
C7C10C11121.2°120.0°
C9C8H10119.8°120.0°
C8C9C10121.4°120.0°
C8C9H11119.3°120.0°
C10C9H11119.3°120.0°
C9C10C11120.9°120.0°
C10C11C12114.0°109.5°
C10C11H12108.3°109.5°
C10C11H13108.3°109.5°
C12C11H12108.3°109.4°
C12C11H13108.3°109.5°
C11C12O2119.7°120.0°
C11C12O3118.6°120.0°
H12C11H13109.5°109.5°
O2C12O3121.7°120.0°
C12O2H14109.5°117.0°
O4C13N2123.4°120.0°
C14N2H15118.7°120.0°
N2C14C15106.9°109.5°
N2C14C16107.9°109.4°
N2C14H16110.9°109.4°
C14N2C13122.6°120.0°
H15N2C13118.7°120.0°
C15C14C16111.6°109.5°
C15C14H16109.7°109.5°
C14C15O5120.7°120.0°
C14C15N3117.1°120.0°
C16C14H16109.8°109.5°
C14C16C17117.0°109.5°
C14C16H17107.6°109.5°
C14C16H18107.5°109.4°
O5C15N3122.2°120.0°
C17C16H17107.5°109.5°
C17C16H18107.6°109.4°
C16C17C18114.4°109.5°
C16C17H19108.2°109.5°
C16C17H20108.2°109.4°
H17C16H18109.5°109.5°
C18C17H19108.2°109.5°
C18C17H20108.2°109.5°
C17C18O6121.1°120.0°
C17C18O7116.9°120.0°
H19C17H20109.5°109.4°
O6C18O7122.0°120.0°
C18O7H21109.5°117.0°
C19N3H22119.7°120.0°
N3C19C20108.6°109.5°
N3C19C21111.9°109.4°
N3C19H23110.2°109.5°
C19N3C15120.6°120.0°
H22N3C15119.7°119.9°
C20C19C21107.7°109.5°
C20C19H23109.3°109.5°
C19C20O8121.4°120.0°
C19C20N4114.9°120.0°
C21C19H23109.0°109.5°
C19C21C22117.3°109.5°
C19C21H24107.5°109.5°
C19C21H25107.5°109.4°
O8C20N4123.7°120.0°
C22C21H24107.5°109.6°
C22C21H25107.5°109.4°
C21C22C23114.8°109.5°
C21C22H26108.1°109.5°
C21C22H27108.1°109.4°
H24C21H25109.5°109.5°
C23C22H26108.1°109.5°
C23C22H27108.1°109.4°
C22C23O9120.8°120.0°
C22C23O10117.1°120.0°
H26C22H27109.5°109.5°
O9C23O10122.1°120.0°
C23O10H28109.5°117.0°
C24N4H29119.0°120.0°
N4C24C25104.0°109.5°
N4C24C26110.6°109.4°
N4C24H30110.9°109.5°
C24N4C20122.0°120.0°
H29N4C20119.0°120.0°
C25C24C26112.3°109.5°
C25C24H30109.4°109.5°
C24C25O11118.6°120.0°
C24C25O12119.1°120.0°
C26C24H30109.5°109.5°
C24C26C27109.4°109.4°
C24C26C28111.4°109.5°
C24C26H31107.7°109.5°
O11C25O12121.8°120.0°
C25O12H40109.5°117.0°
C27C26C28112.1°109.4°
C27C26H31108.0°109.5°
C26C27C29114.2°109.4°
C26C27H32108.3°109.5°
C26C27H33108.3°109.5°
C28C26H31108.0°109.5°
C26C28H34109.5°109.4°
C26C28H35109.5°109.4°
C26C28H36109.5°109.4°
C29C27H32108.3°109.5°
C29C27H33108.3°109.4°
C27C29H37109.5°109.5°
C27C29H38109.5°109.4°
C27C29H39109.5°109.5°
H32C27H33109.4°109.5°
H34C28H35109.4°109.5°
H34C28H36109.4°109.4°
H35C28H36109.5°109.5°
H37C29H38109.4°109.5°
H37C29H39109.5°109.5°
H38C29H39109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C1C2N1175.4°179.7°
O1C1C2H10.0°0.0°
O1C1C2H2120.0°120.0°
O1C1C2H3120.0°120.0°
O1C1N1C37.1°0.1°
O1C1N1H4172.9°179.9°
C1C2H1H2120.0°120.0°
C1C2H1H3120.0°120.0°
C1C2H2H3120.0°120.0°
C2C1N1C3177.7°179.7°
C2C1N1H42.3°0.2°
H1C2H2H3120.0°120.0°
H1C2C1N1175.5°179.7°
H2C2C1N155.4°59.8°
H3C2C1N164.6°60.3°
C3N1H4C1180.0°179.9°
N1C3C4C13127.4°119.9°
N1C3C4H5116.7°120.0°
N1C3C13H5120.7°120.0°
N1C3C4C569.4°65.1°
N1C3C4H650.9°55.0°
N1C3C4H7170.3°175.0°
N1C3C13O459.0°20.0°
N1C3C13N2121.6°160.0°
H4N1C3C459.3°120.0°
H4N1C3C1364.4°120.1°
H4N1C3H5175.4°0.1°
C4C3C13H5115.9°120.0°
C3C4C5H6120.3°120.1°
C3C4C5H7120.3°120.0°
C3C4H6H7119.0°120.0°
C3C4C5C671.4°90.0°
C3C4C5C8106.0°90.2°
C4C3C13O464.4°100.0°
C4C3N1C1120.7°59.9°
C4C3C13N2115.0°80.0°
C13C3C4C5163.1°175.0°
C13C3C4H676.5°64.9°
C13C3C4H742.8°55.0°
C3C13O4N2179.4°180.0°
C3C13N2C14179.1°180.0°
C3C13N2H150.9°0.0°
C13C3N1C1115.6°60.0°
H5C3C4C547.3°55.0°
H5C3C4H6167.6°175.0°
H5C3C4H773.0°65.0°
H5C3C13O4179.7°140.0°
H5C3N1C14.6°180.0°
H5C3C13N20.9°40.0°
C5C4H6H7119.0°120.0°
C4C5C6C8177.4°179.8°
C4C5C6C7177.3°180.0°
C4C5C6H82.7°0.0°
C4C5C8C9177.2°180.0°
C4C5C8H102.8°0.1°
H6C4C5C6168.2°30.0°
H6C4C5C814.4°149.7°
H7C4C5C648.9°150.0°
H7C4C5C8133.7°29.8°
C5C6C7H8180.0°180.0°
C5C6C7C100.2°0.0°
C5C6C7H9179.8°179.9°
C6C5C8C90.3°0.2°
C6C5C8H10179.7°179.7°
C8C5C6C70.1°0.3°
C8C5C6H8179.9°179.8°
C5C8C9H10180.0°179.9°
C5C8C9C100.1°0.1°
C5C8C9H11179.9°180.0°
C6C7C10H9180.0°180.0°
C6C7C10C90.4°0.3°
C6C7C10C11177.3°180.0°
H8C6C7C10179.8°180.0°
H8C6C7H90.2°0.0°
C7C10C9C80.2°0.3°
C7C10C9C11177.7°179.8°
C7C10C9H11179.8°179.7°
C7C10C11C1216.2°90.0°
C7C10C11H12136.9°150.0°
C7C10C11H13104.5°30.0°
H9C7C10C9179.6°179.8°
H9C7C10C112.7°0.0°
C8C9C10H11180.0°179.9°
C8C9C10C11177.5°179.9°
H10C8C9C10179.9°180.0°
H10C8C9H110.1°0.1°
C9C10C11C12161.4°89.7°
C9C10C11H1240.7°30.2°
C9C10C11H1377.9°150.2°
H11C9C10C112.5°0.0°
C10C11C12H12120.6°120.0°
C10C11C12H13120.6°120.0°
C10C11H12H13117.9°120.0°
C10C11C12O258.1°180.0°
C10C11C12O3120.7°0.0°
C12C11H12H13117.9°120.0°
C11C12O2O3178.8°179.9°
C11C12O2H14178.8°180.0°
H12C11C12O262.5°60.0°
H12C11C12O3118.6°120.0°
H13C11C12O2178.8°59.9°
H13C11C12O30.1°120.0°
O3C12O2H140.0°0.0°
O4C13N2C140.4°0.0°
O4C13N2H15179.7°180.0°
C14N2H15C13180.0°180.0°
N2C14C15C16117.7°120.0°
N2C14C15H16120.3°120.0°
N2C14C16H16121.0°119.9°
N2C14C15O525.2°0.0°
N2C14C16C17167.4°65.0°
N2C14C16H1746.3°55.1°
N2C14C16H1871.5°175.0°
N2C14C15N3152.5°180.0°
H15N2C14C15106.3°25.0°
H15N2C14C1613.8°95.0°
H15N2C14H16134.2°145.0°
C15C14C16H16121.8°120.0°
C14C15O5N3177.6°180.0°
C15C14C16C1775.5°175.0°
C15C14C16H17163.5°65.0°
C15C14C16H1845.6°55.0°
C14C15N3C19179.7°180.0°
C14C15N3H220.2°0.0°
C15C14N2C1373.7°155.0°
C16C14C15O592.6°120.0°
C14C16C17H17121.1°120.1°
C14C16C17H18121.1°119.9°
C14C16H17H18116.6°120.0°
C14C16C17C1867.6°180.0°
C14C16C17H19171.6°59.9°
C14C16C17H2053.1°60.0°
C16C14N2C13166.2°85.0°
C16C14C15N389.7°60.0°
H16C14C15O5145.5°120.0°
H16C14C16C1746.4°54.9°
H16C14C16H1774.7°175.0°
H16C14C16H18167.5°65.0°
H16C14N2C1345.8°35.0°
H16C14C15N332.2°60.0°
O5C15N3C192.6°0.0°
O5C15N3H22177.4°180.0°
C17C16H17H18116.6°120.0°
C16C17C18H19120.7°120.0°
C16C17C18H20120.7°120.0°
C16C17H19H20117.7°120.0°
C16C17C18O61.4°0.0°
C16C17C18O7178.5°180.0°
H17C16C17C1853.5°60.0°
H17C16C17H1967.3°180.0°
H17C16C17H20174.2°60.1°
H18C16C17C18171.3°60.0°
H18C16C17H1950.5°60.0°
H18C16C17H2068.0°180.0°
C18C17H19H20117.8°120.0°
C17C18O6O7179.9°180.0°
C17C18O7H21179.9°180.0°
H19C17C18O6119.3°120.0°
H19C17C18O760.8°60.0°
H20C17C18O6122.2°120.0°
H20C17C18O757.7°60.0°
O6C18O7H210.0°0.0°
C19N3H22C15180.0°180.0°
N3C19C20C21121.3°120.0°
N3C19C20H23120.3°120.0°
N3C19C21H23122.2°120.0°
N3C19C20O815.9°0.0°
N3C19C21C2254.7°65.1°
N3C19C21H2466.4°55.1°
N3C19C21H25175.8°175.0°
N3C19C20N4161.6°180.0°
H22N3C19C2048.9°25.0°
H22N3C19C2169.9°95.0°
H22N3C19H23168.6°145.0°
C20C19C21H23118.5°120.0°
C19C20O8N4177.3°180.0°
C20C19C21C22174.0°175.0°
C20C19C21H2452.9°64.9°
C20C19C21H2564.9°55.0°
C19C20N4C24176.4°180.0°
C19C20N4H293.6°0.0°
C20C19N3C15131.1°155.0°
C21C19C20O8105.4°120.0°
C19C21C22H24121.1°120.1°
C19C21C22H25121.1°119.9°
C19C21H24H25116.5°119.9°
C19C21C22C2372.9°180.0°
C19C21C22H2647.9°60.0°
C19C21C22H27166.4°60.1°
C21C19N3C15110.1°85.0°
C21C19C20N477.1°60.0°
H23C19C20O8136.2°120.0°
H23C19C21C2267.5°54.9°
H23C19C21H24171.4°175.1°
H23C19C21H2553.6°65.0°
H23C19N3C1511.4°35.0°
H23C19C20N441.3°60.0°
O8C20N4C246.2°0.0°
O8C20N4H29173.8°180.0°
C22C21H24H25116.4°120.0°
C21C22C23H26120.8°120.1°
C21C22C23H27120.8°119.9°
C21C22H26H27117.5°120.0°
C21C22C23O94.9°0.0°
C21C22C23O10174.9°180.0°
H24C21C22C23166.0°59.9°
H24C21C22H2673.2°180.0°
H24C21C22H2745.2°60.0°
H25C21C22C2348.3°60.1°
H25C21C22H26169.1°59.9°
H25C21C22H2772.5°180.0°
C23C22H26H27117.6°120.0°
C22C23O9O10179.8°180.0°
C22C23O10H28179.8°180.0°
H26C22C23O9125.7°120.0°
H26C22C23O1054.1°60.0°
H27C22C23O9115.8°120.0°
H27C22C23O1064.4°60.0°
O9C23O10H280.0°0.0°
C24N4H29C20180.0°180.0°
N4C24C25C26119.6°119.9°
N4C24C25H30118.6°120.1°
N4C24C26H30122.5°120.0°
N4C24C25O1138.9°0.1°
N4C24C25O12133.8°180.0°
N4C24C26C2779.6°175.0°
N4C24C26C28155.9°65.0°
N4C24C26H3137.6°55.0°
H29N4C24C2595.7°95.0°
H29N4C24C2625.1°25.0°
H29N4C24H30146.8°145.0°
C25C24C26H30121.8°120.0°
C24C25O11O12172.5°180.0°
C25C24C26C27164.6°65.0°
C25C24C26C2840.2°55.0°
C25C24C26H3178.1°175.0°
C24C25O12H40172.5°180.0°
C25C24N4C2084.4°85.0°
C26C24C25O1180.7°120.0°
C26C24C25O12106.5°60.0°
C24C26C27C28124.0°120.0°
C24C26C27H31117.0°120.0°
C24C26C28H31118.1°120.0°
C24C26C27C29179.7°175.0°
C24C26C27H3259.0°65.0°
C24C26C27H3359.6°55.1°
C24C26C28H34180.0°60.1°
C24C26C28H3560.0°60.0°
C24C26C28H3660.0°180.0°
C26C24N4C20154.9°155.0°
H30C24C25O11157.4°120.0°
H30C24C25O1215.3°60.0°
H30C24C26C2742.9°55.0°
H30C24C26C2881.6°175.0°
H30C24C26H31160.1°65.0°
H30C24N4C2033.2°35.0°
O11C25O12H400.0°0.0°
C27C26C28H31118.9°120.0°
C26C27C29H32120.7°120.0°
C26C27C29H33120.7°120.0°
C26C27H32H33117.8°120.1°
C27C26C28H3457.0°180.0°
C27C26C28H35177.0°60.0°
C27C26C28H3663.0°60.1°
C26C27C29H37180.0°60.0°
C26C27C29H3860.0°180.0°
C26C27C29H3960.0°60.0°
C28C26C27C2955.7°65.0°
C28C26C27H3265.0°54.9°
C28C26C27H33176.4°175.0°
C26C28H34H35120.0°120.0°
C26C28H34H36120.0°119.9°
C26C28H35H36120.0°120.0°
H31C26C27C2963.2°55.0°
H31C26C27H32176.1°175.0°
H31C26C27H3357.5°64.9°
H31C26C28H3461.9°60.0°
H31C26C28H3558.1°180.0°
H31C26C28H36178.1°59.9°
C29C27H32H33117.8°120.0°
C27C29H37H38120.0°119.9°
C27C29H37H39120.0°120.0°
C27C29H38H39120.0°119.9°
H32C27C29H3759.3°60.0°
H32C27C29H38179.3°60.0°
H32C27C29H3960.7°180.0°
H33C27C29H3759.3°180.0°
H33C27C29H3860.7°60.0°
H33C27C29H39179.3°60.0°
H34C28H35H36119.9°120.0°
H37C29H38H39120.0°120.1°

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon