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PRD_000388

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1Cdoub1.22Å1.24Å
CO2sing1.35Å1.39Å
O2CTsing1.45Å1.44Å
CTC1sing1.53Å1.55Å
CTC2sing1.53Å1.55Å
CTC3sing1.53Å1.55Å
C1H11sing1.09Å1.10Å
C1H12sing1.09Å1.10Å
C1H13sing1.09Å1.10Å
C2H21sing1.09Å1.10Å
C2H22sing1.09Å1.10Å
C2H23sing1.09Å1.10Å
C3H31sing1.09Å1.10Å
C3H32sing1.09Å1.10Å
C3H33sing1.09Å1.10Å
NCAsing1.47Å1.44Å
NHsing0.97Å1.00Å
CAC4sing1.51Å1.53Å
CACBsing1.53Å1.53Å
CAHAsing1.09Å1.10Å
C4Odoub1.21Å1.25Å
CBHB1sing1.09Å1.10Å
CBHB2sing1.09Å1.10Å
CBHB3sing1.09Å1.10Å
N1CA1sing1.46Å1.45Å
N1H1sing0.97Å1.00Å
CA1C5sing1.51Å1.54Å
CA1CB1sing1.53Å1.56Å
CA1HA1sing1.09Å1.10Å
C5O3doub1.21Å1.25Å
CB1CG1sing1.53Å1.52Å
CB1CG2sing1.53Å1.49Å
CB1HBsing1.09Å1.10Å
CG1HG11sing1.09Å1.10Å
CG1HG12sing1.09Å1.10Å
CG1HG13sing1.09Å1.10Å
CG2HG21sing1.09Å1.10Å
CG2HG22sing1.09Å1.10Å
CG2HG23sing1.09Å1.10Å
N2CA2sing1.46Å1.46Å
N2HN1sing0.97Å1.00Å
CA2CB2sing1.53Å1.52Å
CA2Bsing1.57Å1.59Å
CA2HA2sing1.09Å1.10Å
CB2CGsing1.53Å1.50Å
CB2HB11sing1.09Å1.10Å
CB2HB21sing1.09Å1.10Å
CGCDsing1.53Å1.49Å
CGHG1sing1.09Å1.10Å
CGHG2sing1.09Å1.10Å
CDCEsing1.53Å1.52Å
CDHD1sing1.09Å1.10Å
CDHD2sing1.09Å1.10Å
CENZsing1.47Å1.46Å
CEHE1sing1.09Å1.10Å
CEHE2sing1.09Å1.10Å
NZHZ1sing1.01Å1.00Å
NZHZ2sing1.01Å1.00Å
NZHZ3sing1.01Å1.00Å
BO4sing1.42Å1.38Å
O4HOsing0.97Å0.95Å
C11O11sing1.43Å1.45Å
C11C21sing1.53Å1.52Å
C11H111sing1.09Å1.10Å
C11H121sing1.09Å1.10Å
C21C31sing1.53Å1.51Å
C21H211sing1.09Å1.10Å
C21H221sing1.09Å1.10Å
C31O31sing1.43Å1.41Å
C31H311sing1.09Å1.10Å
C31H321sing1.09Å1.10Å
O31HO3sing0.97Å0.95Å
CNsing1.35Å1.33Å
C4N1sing1.35Å1.33Å
C5N2sing1.35Å1.34Å
BO11sing1.42Å1.72Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1CO2121.0°119.9°
O1CN122.1°120.1°
CO2CT128.7°117.0°
O2CN116.9°120.0°
O2CTC1108.6°109.5°
O2CTC2114.7°109.5°
O2CTC3108.7°109.5°
C1CTC2108.6°109.5°
C1CTC3108.9°109.5°
CTC1H11109.5°109.5°
CTC1H12109.4°109.5°
CTC1H13109.4°109.5°
C2CTC3107.3°109.4°
CTC2H21109.5°109.5°
CTC2H22109.5°109.5°
CTC2H23109.4°109.5°
CTC3H31109.5°109.5°
CTC3H32109.5°109.5°
CTC3H33109.4°109.4°
H11C1H12109.5°109.4°
H11C1H13109.4°109.4°
H12C1H13109.5°109.5°
H21C2H22109.5°109.5°
H21C2H23109.5°109.4°
H22C2H23109.5°109.5°
H31C3H32109.5°109.5°
H31C3H33109.5°109.5°
H32C3H33109.5°109.5°
CANH118.9°120.0°
NCAC4112.8°109.5°
NCACB109.2°109.5°
NCAHA107.4°109.5°
CANC122.3°120.0°
HNC118.8°120.0°
C4CACB109.6°109.5°
C4CAHA107.0°109.5°
CAC4O127.3°120.0°
CAC4N1107.9°120.0°
CBCAHA110.8°109.4°
CACBHB1109.5°109.5°
CACBHB2109.4°109.5°
CACBHB3109.4°109.5°
OC4N1124.8°120.0°
HB1CBHB2109.5°109.5°
HB1CBHB3109.5°109.4°
HB2CBHB3109.5°109.4°
CA1N1H1117.4°120.0°
N1CA1C5105.8°109.5°
N1CA1CB1102.1°109.4°
N1CA1HA1119.5°109.5°
CA1N1C4125.3°120.0°
H1N1C4117.4°120.0°
C5CA1CB1117.6°109.5°
C5CA1HA1104.6°109.5°
CA1C5O3119.2°120.0°
CA1C5N2119.9°120.0°
CB1CA1HA1108.1°109.5°
CA1CB1CG1113.8°109.5°
CA1CB1CG2107.4°109.5°
CA1CB1HB108.4°109.5°
O3C5N2120.9°120.0°
CG1CB1CG2110.9°109.5°
CG1CB1HB104.8°109.5°
CB1CG1HG11109.5°109.5°
CB1CG1HG12109.5°109.5°
CB1CG1HG13109.5°109.5°
CG2CB1HB111.5°109.5°
CB1CG2HG21109.5°109.5°
CB1CG2HG22109.5°109.5°
CB1CG2HG23109.5°109.5°
HG11CG1HG12109.4°109.5°
HG11CG1HG13109.4°109.4°
HG12CG1HG13109.5°109.5°
HG21CG2HG22109.4°109.5°
HG21CG2HG23109.5°109.5°
HG22CG2HG23109.5°109.4°
CA2N2HN1118.8°120.0°
N2CA2CB2103.5°109.5°
N2CA2B100.4°109.4°
N2CA2HA2122.2°109.5°
CA2N2C5122.3°120.0°
HN1N2C5118.9°120.0°
CB2CA2B118.7°109.5°
CB2CA2HA2105.0°109.5°
CA2CB2CG107.0°109.5°
CA2CB2HB11110.3°109.5°
CA2CB2HB21110.8°109.5°
BCA2HA2108.0°109.5°
CA2BO4120.1°120.0°
CA2BO11105.6°120.0°
CGCB2HB11110.3°109.5°
CGCB2HB21110.8°109.5°
CB2CGCD109.5°109.5°
CB2CGHG1109.5°109.5°
CB2CGHG2109.5°109.5°
HB11CB2HB21107.6°109.4°
CDCGHG1109.5°109.5°
CDCGHG2109.5°109.5°
CGCDCE107.4°109.5°
CGCDHD1110.2°109.5°
CGCDHD2110.7°109.4°
HG1CGHG2109.5°109.4°
CECDHD1110.2°109.5°
CECDHD2110.6°109.5°
CDCENZ107.8°109.5°
CDCEHE1110.1°109.5°
CDCEHE2110.4°109.5°
HD1CDHD2107.9°109.5°
NZCEHE1110.0°109.5°
NZCEHE2110.4°109.5°
CENZHZ1109.5°109.5°
CENZHZ2109.4°109.5°
CENZHZ3109.5°109.5°
HE1CEHE2108.2°109.4°
HZ1NZHZ2109.5°109.5°
HZ1NZHZ3109.4°109.5°
HZ2NZHZ3109.5°109.4°
BO4HO109.5°114.0°
O4BO1195.5°120.0°
O11C11C21105.5°109.5°
O11C11H111110.8°109.4°
O11C11H121111.6°109.5°
C11O11B116.6°114.0°
C21C11H111110.8°109.5°
C21C11H121111.7°109.4°
C11C21C31110.7°109.5°
C11C21H211109.1°109.5°
C11C21H221108.8°109.4°
H111C11H121106.5°109.5°
C31C21H211109.1°109.5°
C31C21H221108.8°109.5°
C21C31O31110.3°109.5°
C21C31H311109.2°109.5°
C21C31H321109.0°109.4°
H211C21H221110.4°109.5°
O31C31H311109.2°109.5°
O31C31H321109.0°109.5°
C31O31HO3109.5°113.9°
H311C31H321110.1°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1CO2N178.4°179.8°
O1CO2CT110.0°0.1°
O1CNCA5.3°0.0°
O1CNH174.7°179.9°
CO2CTC1175.4°59.9°
CO2CTC263.0°180.0°
CO2CTC357.0°60.1°
O2CNCA176.3°179.7°
O2CNH3.7°0.3°
O2CTC1C2125.3°120.0°
O2CTC1C3118.2°120.0°
O2CTC2C3120.8°120.0°
O2CTC1H11114.5°60.0°
O2CTC1H125.5°180.0°
O2CTC1H13125.6°60.0°
O2CTC2H2196.2°59.9°
O2CTC2H2223.8°180.0°
O2CTC2H23143.8°60.0°
O2CTC3H3176.4°60.0°
O2CTC3H3243.6°179.9°
O2CTC3H33163.5°60.0°
CTO2CN71.6°179.7°
C1CTC2C3117.6°120.0°
CTC1H11H12120.0°120.0°
CTC1H11H13120.0°120.0°
CTC1H12H13120.0°120.1°
C1CTC2H2125.4°180.0°
C1CTC2H22145.4°60.0°
C1CTC2H2394.6°60.1°
C1CTC3H31165.4°60.0°
C1CTC3H3274.5°60.0°
C1CTC3H3345.4°180.0°
C2CTC1H11120.2°60.0°
C2CTC1H12119.7°59.9°
C2CTC1H130.3°180.0°
CTC2H21H22120.0°120.0°
CTC2H21H23120.0°120.0°
CTC2H22H23120.0°120.0°
C2CTC3H3148.1°180.0°
C2CTC3H32168.1°60.0°
C2CTC3H3371.9°60.0°
C3CTC1H113.7°180.0°
C3CTC1H12123.7°60.0°
C3CTC1H13116.2°60.0°
C3CTC2H21143.0°60.0°
C3CTC2H2297.0°60.0°
C3CTC2H2323.0°180.0°
CTC3H31H32120.0°120.0°
CTC3H31H33120.0°120.0°
CTC3H32H33120.0°120.0°
H11C1H12H13120.0°119.9°
H21C2H22H23120.0°119.9°
H31C3H32H33120.0°120.0°
CANHC180.0°180.0°
NCAC4CB121.9°120.0°
NCAC4HA117.9°120.0°
NCACBHA118.1°120.0°
NCAC4O45.3°0.0°
NCACBHB168.5°60.0°
NCACBHB2171.5°180.0°
NCACBHB351.6°60.0°
NCAC4N1134.4°180.0°
HNCAC497.4°25.0°
HNCACB24.7°95.0°
HNCAHA144.9°145.0°
C4CACBHA117.8°120.0°
CAC4ON1179.7°179.9°
C4CACBHB155.6°60.0°
C4CACBHB264.4°60.0°
C4CACBHB3175.6°180.0°
CAC4N1CA1174.4°180.0°
CAC4N1H15.6°0.1°
C4CANC82.6°155.0°
CBCAC4O76.6°120.0°
CACBHB1HB2120.0°120.0°
CACBHB1HB3120.0°120.0°
CACBHB2HB3120.0°120.0°
CBCANC155.2°85.0°
CBCAC4N1103.7°60.0°
HACAC4O163.3°120.0°
HACACBHB1173.4°180.0°
HACACBHB253.4°60.0°
HACACBHB366.6°60.0°
HACANC35.0°35.0°
HACAC4N116.5°59.9°
OC4N1CA15.8°0.1°
OC4N1H1174.2°180.0°
HB1CBHB2HB3120.0°120.0°
CA1N1H1C4180.0°179.9°
N1CA1C5CB1113.1°120.0°
N1CA1C5HA1127.0°120.0°
N1CA1CB1HA1126.9°120.0°
N1CA1C5O339.2°19.6°
N1CA1CB1CG1106.2°64.9°
N1CA1CB1CG2130.6°55.1°
N1CA1CB1HB10.0°175.1°
N1CA1C5N2138.5°160.4°
H1N1CA1C5116.2°25.0°
H1N1CA1CB17.3°95.0°
H1N1CA1HA1126.4°145.0°
C5CA1CB1HA1118.0°120.0°
CA1C5O3N2177.6°180.0°
C5CA1CB1CG19.0°175.0°
C5CA1CB1CG2114.2°64.9°
C5CA1CB1HB125.2°55.1°
CA1C5N2CA2176.9°175.3°
CA1C5N2HN13.1°4.7°
C5CA1N1C463.8°155.0°
CB1CA1C5O373.9°100.4°
CA1CB1CG1CG2121.3°120.0°
CA1CB1CG1HB118.3°120.0°
CA1CB1CG2HB118.7°120.0°
CA1CB1CG1HG1128.3°66.1°
CA1CB1CG1HG12148.3°173.9°
CA1CB1CG1HG1391.7°53.9°
CA1CB1CG2HG21158.1°60.0°
CA1CB1CG2HG2238.1°180.0°
CA1CB1CG2HG2381.9°60.0°
CB1CA1N1C4172.7°85.0°
CB1CA1C5N2108.4°79.6°
HA1CA1C5O3166.2°139.6°
HA1CA1CB1CG1127.0°55.0°
HA1CA1CB1CG23.8°175.1°
HA1CA1CB1HB116.8°64.9°
HA1CA1N1C453.6°34.9°
HA1CA1C5N211.5°40.4°
O3C5N2CA25.5°4.7°
O3C5N2HN1174.6°175.3°
CG1CB1CG2HB116.4°120.0°
CB1CG1HG11HG12120.0°120.0°
CB1CG1HG11HG13120.0°120.0°
CB1CG1HG12HG13120.0°120.0°
CG1CB1CG2HG2133.1°180.0°
CG1CB1CG2HG2286.8°60.0°
CG1CB1CG2HG23153.1°60.0°
CG2CB1CG1HG1192.9°53.9°
CG2CB1CG1HG1227.0°66.1°
CG2CB1CG1HG13147.1°173.9°
CB1CG2HG21HG22120.0°120.0°
CB1CG2HG21HG23120.0°120.0°
CB1CG2HG22HG23120.0°120.0°
HBCB1CG1HG11146.6°173.9°
HBCB1CG1HG1293.4°53.9°
HBCB1CG1HG1326.6°66.1°
HBCB1CG2HG2183.3°60.0°
HBCB1CG2HG22156.8°60.0°
HBCB1CG2HG2336.7°180.0°
HG11CG1HG12HG13120.0°120.0°
HG21CG2HG22HG23120.0°120.0°
CA2N2HN1C5180.0°180.0°
N2CA2CB2B110.0°120.0°
N2CA2CB2HA2129.2°120.1°
N2CA2BHA2128.9°120.0°
N2CA2CB2CG77.7°180.0°
N2CA2CB2HB1142.4°60.0°
N2CA2CB2HB21161.4°59.9°
N2CA2BO435.3°0.1°
N2CA2BO11141.4°180.0°
HN1N2CA2CB240.5°45.0°
HN1N2CA2B82.6°75.0°
HN1N2CA2HA2158.3°165.0°
CB2CA2BHA2119.2°120.0°
CA2CB2CGHB11120.0°120.0°
CA2CB2CGHB21121.0°120.1°
CA2CB2HB11HB21121.0°120.0°
CA2CB2CGCD168.8°NaN°
CA2CB2CGHG171.2°60.0°
CA2CB2CGHG248.8°59.9°
CB2CA2BO4147.1°120.0°
CB2CA2N2C5139.5°135.0°
CB2CA2BO11106.8°60.0°
BCA2CB2CG172.3°60.0°
BCA2CB2HB1167.7°180.0°
BCA2CB2HB2151.3°60.0°
CA2BO4O11111.6°179.9°
CA2BO4HO128.4°180.0°
CA2BO11C11170.7°180.0°
BCA2N2C597.3°105.0°
HA2CA2CB2CG51.5°60.0°
HA2CA2CB2HB11171.5°60.0°
HA2CA2CB2HB2169.4°180.0°
HA2CA2BO493.6°120.0°
HA2CA2N2C521.7°15.0°
HA2CA2BO1112.4°60.0°
CGCB2HB11HB21121.0°120.0°
CB2CGCDHG1120.0°120.0°
CB2CGCDHG2120.0°120.0°
CB2CGHG1HG2120.0°120.0°
CB2CGCDCE173.7°180.0°
CB2CGCDHD166.3°60.0°
CB2CGCDHD252.9°60.0°
HB11CB2CGCD48.8°60.0°
HB11CB2CGHG1168.8°NaN°
HB11CB2CGHG271.2°60.0°
HB21CB2CGCD70.2°59.9°
HB21CB2CGHG149.8°60.0°
HB21CB2CGHG2169.8°180.0°
CDCGHG1HG2120.0°120.0°
CGCDCEHD1120.0°120.0°
CGCDCEHD2120.8°120.0°
CGCDHD1HD2120.9°120.0°
CGCDCENZ175.2°180.0°
CGCDCEHE155.2°60.0°
CGCDCEHE264.1°59.9°
HG1CGCDCE53.7°60.0°
HG1CGCDHD1173.7°180.0°
HG1CGCDHD267.1°60.0°
HG2CGCDCE66.3°60.0°
HG2CGCDHD153.7°60.0°
HG2CGCDHD2172.9°180.0°
CECDHD1HD2120.8°120.0°
CDCENZHE1120.0°120.0°
CDCENZHE2120.7°120.1°
CDCEHE1HE2120.7°120.0°
CDCENZHZ199.3°180.0°
CDCENZHZ220.7°60.0°
CDCENZHZ3140.7°60.0°
HD1CDCENZ64.8°60.0°
HD1CDCEHE1175.2°180.0°
HD1CDCEHE255.9°60.0°
HD2CDCENZ54.4°60.0°
HD2CDCEHE165.6°60.0°
HD2CDCEHE2175.0°179.9°
NZCEHE1HE2120.7°120.0°
CENZHZ1HZ2120.0°120.0°
CENZHZ1HZ3120.0°120.0°
CENZHZ2HZ3120.0°120.0°
HE1CENZHZ1140.6°60.0°
HE1CENZHZ299.4°180.0°
HE1CENZHZ320.7°60.0°
HE2CENZHZ121.3°60.0°
HE2CENZHZ2141.3°60.1°
HE2CENZHZ398.6°180.0°
HZ1NZHZ2HZ3120.0°120.0°
O4BO11C1147.3°0.0°
HOO4BO1116.8°0.0°
O11C11C21H111120.0°120.0°
O11C11C21H121121.5°120.0°
O11C11H111H121121.6°120.0°
O11C11C21C3160.7°180.0°
O11C11C21H211179.2°60.0°
O11C11C21H22158.7°60.0°
C21C11H111H121121.6°120.0°
C11C21C31H211120.0°120.0°
C11C21C31H221119.5°120.0°
C11C21H211H221119.5°119.9°
C11C21C31O31150.2°180.0°
C11C21C31H31130.1°60.0°
C11C21C31H32190.2°60.0°
C21C11O11B104.9°180.0°
H111C11C21C3159.2°60.0°
H111C11C21H21160.8°179.9°
H111C11C21H221178.7°60.0°
H111C11O11B135.1°60.0°
H121C11C21C31177.8°60.1°
H121C11C21H21157.8°60.0°
H121C11C21H22162.7°180.0°
H121C11O11B16.6°60.0°
C31C21H211H221119.5°120.0°
C21C31O31H311120.0°120.0°
C21C31O31H321119.7°119.9°
C21C31H311H321119.7°119.9°
C21C31O31HO3112.5°180.0°
H211C21C31O3189.8°60.0°
H211C21C31H311150.2°180.0°
H211C21C31H32129.8°60.0°
H221C21C31O3130.6°60.1°
H221C21C31H31189.4°60.0°
H221C21C31H321150.3°180.0°
O31C31H311H321119.7°120.0°
H311C31O31HO3127.5°60.0°
H321C31O31HO37.2°60.1°

220113

PDB entries from 2024-05-22

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