Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_000345

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1H1sing1.09Å1.10Å
C1H2sing1.09Å1.10Å
C1H12sing1.09Å1.10Å
O2C7doub1.21Å1.24Å
O3P1doub1.48Å1.54Å
O4P1sing1.61Å1.55Å
O4H3sing0.97Å0.95Å
O5H4sing0.97Å0.95Å
C2C4sing1.38Å1.40ÅAromatic
C2H5sing1.08Å1.08Å
C3C5doub1.38Å1.42ÅAromatic
C3C8sing1.39Å1.39ÅAromatic
C3H6sing1.08Å1.08Å
C4H7sing1.08Å1.08Å
C5C9sing1.38Å1.43ÅAromatic
C5H8sing1.08Å1.08Å
N1C1sing1.46Å1.45Å
N1C6sing1.35Å1.36Å
N1H13sing0.97Å1.00Å
O6C8sing1.36Å1.43Å
O6P1sing1.61Å1.63Å
C6O1doub1.21Å1.22Å
C8C2doub1.39Å1.42ÅAromatic
C9C4doub1.38Å1.41ÅAromatic
C9C12sing1.51Å1.54Å
C10C6sing1.51Å1.52Å
C10C11sing1.53Å1.51Å
C10H9sing1.09Å1.10Å
C11C7sing1.51Å1.56Å
C11H10sing1.09Å1.10Å
C12C10sing1.53Å1.48Å
C12C11sing1.53Å1.59Å
C12H11sing1.09Å1.10Å
P1O5sing1.61Å1.50Å
N2C13sing1.47Å1.47Å
N2H14sing0.97Å1.00Å
C13C14sing1.51Å1.53Å
C13C15sing1.53Å1.54Å
C13H15sing1.09Å1.10Å
C14O7doub1.21Å1.23Å
C15C16sing1.53Å1.51Å
C15H16sing1.09Å1.10Å
C15H17sing1.09Å1.10Å
C16C17sing1.51Å1.52Å
C16H18sing1.09Å1.10Å
C16H19sing1.09Å1.10Å
C17O8doub1.21Å1.25Å
C17O9sing1.34Å1.24Å
O9H20sing0.97Å0.95Å
N3C18sing1.47Å1.46Å
N3H21sing0.97Å1.00Å
C18C19sing1.51Å1.53Å
C18C20sing1.53Å1.52Å
C18H22sing1.09Å1.10Å
C19O10doub1.21Å1.24Å
C20C21sing1.53Å1.50Å
C20H23sing1.09Å1.10Å
C20H24sing1.09Å1.10Å
C21C22sing1.51Å1.52Å
C21H25sing1.09Å1.10Å
C21H26sing1.09Å1.10Å
C22O11doub1.21Å1.26Å
C22O12sing1.34Å1.26Å
O12H27sing0.97Å0.95Å
N4C23sing1.47Å1.47Å
N4H28sing0.97Å1.00Å
C23C24sing1.51Å1.53Å
C23C25sing1.53Å1.57Å
C23H29sing1.09Å1.10Å
C24O13doub1.21Å43.87Å
C24O14sing1.34Å1.26Å
C25C26sing1.53Å1.52Å
C25C27sing1.53Å1.54Å
C25H30sing1.09Å1.10Å
C26C28sing1.53Å1.51Å
C26H31sing1.09Å1.10Å
C26H32sing1.09Å1.10Å
C27H33sing1.09Å1.10Å
C27H34sing1.09Å1.10Å
C27H35sing1.09Å1.10Å
C28H36sing1.09Å1.10Å
C28H37sing1.09Å1.10Å
C28H38sing1.09Å1.10Å
O14H39sing0.97Å0.95Å
C7N2sing1.35Å1.33Å
C14N3sing1.35Å1.33Å
C19N4sing1.35Å1.34Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
H1C1H2109.4°109.5°
H1C1H12109.5°109.4°
H1C1N1109.5°109.5°
H2C1H12109.5°109.5°
H2C1N1109.5°109.5°
H12C1N1109.5°109.4°
O2C7C11118.7°120.0°
O2C7N2120.9°120.0°
O3P1O4109.8°109.5°
O3P1O6102.8°109.4°
O3P1O5114.9°109.5°
P1O4H3109.5°114.0°
O4P1O6108.2°109.5°
O4P1O5114.6°109.5°
H4O5P1109.5°114.0°
C4C2H5121.2°120.0°
C2C4H7118.5°120.0°
C4C2C8117.6°119.9°
C2C4C9123.0°120.1°
H5C2C8121.2°120.0°
C5C3C8121.3°119.9°
C5C3H6119.3°120.1°
C3C5C9118.9°120.1°
C3C5H8120.6°119.9°
C8C3H6119.4°120.0°
C3C8O6120.2°120.1°
C3C8C2121.2°119.9°
H7C4C9118.5°120.0°
C9C5H8120.5°120.0°
C5C9C4118.0°120.1°
C5C9C12125.9°119.9°
C1N1C6120.7°120.0°
C1N1H13119.7°120.0°
C6N1H13119.7°120.0°
N1C6O1123.2°120.0°
N1C6C10111.7°120.0°
C8O6P1125.3°114.0°
O6C8C2118.7°120.1°
O6P1O5105.6°109.5°
O1C6C10125.1°120.0°
C4C9C12116.0°119.9°
C9C12C10121.3°117.5°
C9C12C11109.1°117.5°
C9C12H11117.3°115.5°
C6C10C11106.6°117.5°
C6C10H9115.8°115.5°
C6C10C12124.6°117.5°
C11C10H9116.0°117.6°
C10C11C7125.2°117.5°
C10C11H10115.8°117.5°
C11C10C1264.4°60.0°
C10C11C1257.1°60.0°
H9C10C12116.4°117.5°
C7C11H10114.9°115.5°
C7C11C12116.0°117.5°
C11C7N2120.3°120.0°
H10C11C12114.3°117.6°
C10C12C1158.5°60.0°
C10C12H11118.6°117.5°
C11C12H11116.4°117.5°
C13N2H14119.8°120.0°
N2C13C14120.7°109.4°
N2C13C15110.8°109.5°
N2C13H15106.1°109.4°
C13N2C7120.4°120.0°
H14N2C7119.8°120.0°
C14C13C15107.2°109.5°
C14C13H15105.5°109.5°
C13C14O7121.8°120.0°
C13C14N3114.5°120.0°
C15C13H15105.4°109.5°
C13C15C16115.4°109.5°
C13C15H16108.0°109.5°
C13C15H17108.0°109.5°
O7C14N3123.6°120.0°
C16C15H16108.0°109.5°
C16C15H17108.0°109.5°
C15C16C17113.0°109.5°
C15C16H18108.6°109.5°
C15C16H19108.6°109.5°
H16C15H17109.5°109.5°
C17C16H18108.6°109.5°
C17C16H19108.6°109.5°
C16C17O8119.5°120.0°
C16C17O9117.3°120.0°
H18C16H19109.4°109.4°
O8C17O9123.2°120.1°
C17O9H20109.5°117.0°
C18N3H21118.5°120.0°
N3C18C19109.1°109.5°
N3C18C20110.1°109.4°
N3C18H22110.2°109.5°
C18N3C14123.0°120.0°
H21N3C14118.5°120.0°
C19C18C20108.9°109.5°
C19C18H22109.3°109.5°
C18C19O10120.2°120.0°
C18C19N4117.1°120.0°
C20C18H22109.4°109.4°
C18C20C21115.0°109.5°
C18C20H23108.1°109.5°
C18C20H24108.0°109.4°
O10C19N4122.7°120.0°
C21C20H23108.1°109.5°
C21C20H24108.1°109.5°
C20C21C22111.4°109.5°
C20C21H25109.0°109.5°
C20C21H26109.0°109.5°
H23C20H24109.5°109.4°
C22C21H25109.0°109.4°
C22C21H26109.0°109.5°
C21C22O11118.5°120.0°
C21C22O12118.2°120.0°
H25C21H26109.5°109.5°
O11C22O12123.3°120.0°
C22O12H27109.5°117.0°
C23N4H28119.1°120.0°
N4C23C24106.5°109.5°
N4C23C25113.2°109.5°
N4C23H29111.0°109.5°
C23N4C19121.8°120.0°
H28N4C19119.1°120.0°
C24C23C25106.4°109.4°
C24C23H29110.0°109.5°
C23C24O1334.4°120.0°
C23C24O14114.4°120.0°
C25C23H29109.6°109.4°
C23C25C26111.4°109.5°
C23C25C27110.5°109.5°
C23C25H30108.6°109.5°
O13C24O14105.2°120.0°
C24O14H39109.5°117.0°
C26C25C27108.1°109.5°
C26C25H30109.2°109.5°
C25C26C28111.6°109.5°
C25C26H31108.9°109.5°
C25C26H32108.9°109.4°
C27C25H30109.0°109.4°
C25C27H33109.5°109.4°
C25C27H34109.4°109.5°
C25C27H35109.5°109.5°
C28C26H31108.9°109.5°
C28C26H32108.9°109.4°
C26C28H36109.5°109.4°
C26C28H37109.4°109.5°
C26C28H38109.5°109.4°
H31C26H32109.5°109.5°
H33C27H34109.5°109.5°
H33C27H35109.5°109.5°
H34C27H35109.5°109.5°
H36C28H37109.5°109.5°
H36C28H38109.4°109.5°
H37C28H38109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
H1C1H2H12120.0°120.0°
H1C1H2N1120.0°120.1°
H1C1H12N1120.0°120.0°
H1C1N1C6180.0°180.0°
H1C1N1H130.0°0.1°
H2C1H12N1120.0°120.0°
H2C1N1C660.0°59.9°
H2C1N1H13120.0°120.0°
H12C1N1C660.0°60.0°
H12C1N1H13120.0°120.0°
O2C7C11C1026.8°68.6°
O2C7C11N2177.0°179.9°
O2C7C11H10176.9°145.8°
O2C7C11C1239.9°0.0°
O2C7N2C131.3°0.1°
O2C7N2H14178.7°180.0°
O3P1O4O6111.5°120.0°
O3P1O4O5131.0°120.1°
O3P1O4H30.0°60.0°
O3P1O5H40.0°180.0°
O3P1O6C8164.9°55.0°
O3P1O6O5120.7°120.0°
O4P1O5H4128.4°60.0°
O4P1O6C879.0°175.0°
O4P1O6O5123.2°120.0°
H3O4P1O6111.5°180.0°
H3O4P1O5131.0°60.1°
H4O5P1O6112.5°60.0°
C4C2H5C8180.0°179.7°
C4C2C8C30.5°0.0°
C2C4H7C9180.0°179.9°
C2C4C9C50.4°0.0°
C4C2C8O6179.2°179.9°
C2C4C9C12179.7°179.4°
H5C2C8C3179.5°179.7°
H5C2C4H70.1°0.1°
H5C2C8O60.9°0.2°
H5C2C4C9179.9°180.0°
C5C3C8H6180.0°179.1°
C3C5C9H8180.0°179.1°
C5C3C8O6179.2°179.5°
C5C3C8C20.4°0.6°
C3C5C9C40.4°0.6°
C3C5C9C12179.6°180.0°
C8C3C5C90.0°0.9°
C8C3C5H8179.9°180.0°
C3C8O6C2179.6°179.9°
C3C8O6P1114.0°90.0°
H6C3C5C9180.0°180.0°
H6C3C5H80.1°0.8°
H6C3C8O60.8°0.4°
H6C3C8C2179.6°179.7°
H7C4C9C5179.6°179.9°
H7C4C2C8179.9°179.8°
H7C4C9C120.4°0.5°
C5C9C4C12179.3°179.4°
C5C9C12C10107.8°66.5°
C5C9C12C1143.8°2.1°
C5C9C12H1191.3°147.8°
H8C5C9C4179.5°179.7°
H8C5C9C120.4°0.9°
C1N1C6H13180.0°179.9°
C1N1C6O125.2°0.1°
C1N1C6C10155.5°180.0°
N1C6O1C10179.2°179.9°
N1C6C10C11178.1°62.0°
N1C6C10H947.4°83.7°
N1C6C10C12111.9°130.6°
H13N1C6O1154.8°180.0°
H13N1C6C1024.5°0.1°
C8O6P1O544.2°65.0°
P1O6C8C266.3°89.9°
O1C6C10C112.6°118.0°
O1C6C10H9133.4°96.3°
O1C6C10C1267.4°49.3°
C8C2C4C90.0°0.3°
C4C9C12C1071.3°114.1°
C4C9C12C11135.4°177.3°
C4C9C12H1189.5°31.6°
C9C12C10C61.2°0.1°
C9C12C11C10115.7°107.5°
C9C12C10H9157.9°145.0°
C9C12C11C7127.6°145.0°
C9C12C11H109.6°0.0°
C9C12C10H11160.6°145.0°
C9C12C11H11135.5°145.0°
C6C10C11H9130.6°145.0°
C6C10C11C12121.0°107.5°
C6C10H9C12161.0°145.6°
C6C10C11C7138.5°145.0°
C6C10C11H1017.6°0.0°
C6C10C12H11161.8°145.0°
C11C10H9C1272.9°68.7°
C10C11C7H10156.3°145.7°
C10C11C7C1266.7°68.6°
C10C11H10C1263.7°68.6°
C11C10C12H11105.1°107.5°
C10C11C7N2150.2°111.3°
H9C10C11C77.9°0.0°
H9C10C11H10148.2°144.9°
H9C10C12H112.7°0.0°
C7C11H10C12137.7°145.7°
C7C11C12H117.9°0.0°
C11C7N2C13175.7°180.0°
C11C7N2H144.4°0.1°
H10C11C12H11145.2°145.0°
H10C11C7N26.1°34.3°
C12C11C7N2143.0°180.0°
C13N2H14C7180.0°179.9°
N2C13C14C15128.0°120.0°
N2C13C14H15120.0°120.0°
N2C13C15H15114.4°120.0°
N2C13C14O725.8°0.0°
N2C13C15C1654.7°65.0°
N2C13C15H1666.2°55.0°
N2C13C15H17175.6°175.0°
N2C13C14N3155.1°180.0°
H14N2C13C14114.9°25.0°
H14N2C13C1511.5°95.0°
H14N2C13H15125.5°145.0°
C14C13C15H15112.1°120.1°
C13C14O7N3179.0°179.9°
C14C13C15C16171.8°175.0°
C14C13C15H1667.4°65.0°
C14C13C15H1750.9°55.0°
C13C14N3C18178.5°180.0°
C13C14N3H211.5°0.0°
C14C13N2C765.1°154.9°
C15C13C14O7102.2°119.9°
C13C15C16H16120.9°120.0°
C13C15C16H17120.9°120.0°
C13C15H16H17117.3°120.0°
C13C15C16C1767.5°180.0°
C13C15C16H1853.0°60.0°
C13C15C16H19171.9°60.0°
C15C13N2C7168.5°85.1°
C15C13C14N376.9°60.0°
H15C13C14O7145.8°120.0°
H15C13C15C1659.7°55.0°
H15C13C15H16179.5°175.0°
H15C13C15H1761.2°65.0°
H15C13N2C754.6°34.9°
H15C13C14N335.1°60.1°
O7C14N3C180.6°0.0°
O7C14N3H21179.4°180.0°
C16C15H16H17117.3°120.0°
C15C16C17H18120.5°120.1°
C15C16C17H19120.5°120.0°
C15C16H18H19118.4°120.0°
C15C16C17O859.7°0.0°
C15C16C17O9121.0°180.0°
H16C15C16C17171.6°60.0°
H16C15C16H1867.9°180.0°
H16C15C16H1951.0°60.0°
H17C15C16C1753.4°60.0°
H17C15C16H18173.9°60.0°
H17C15C16H1967.2°180.0°
C17C16H18H19118.4°120.0°
C16C17O8O9179.3°180.0°
C16C17O9H20179.3°180.0°
H18C16C17O8179.8°120.1°
H18C16C17O90.4°60.0°
H19C16C17O860.8°120.0°
H19C16C17O9118.5°60.0°
O8C17O9H200.0°0.1°
C18N3H21C14180.0°180.0°
N3C18C19C20120.1°120.0°
N3C18C19H22120.5°120.1°
N3C18C20H22121.2°120.0°
N3C18C19O1030.7°0.0°
N3C18C20C2183.8°65.0°
N3C18C20H2337.1°55.0°
N3C18C20H24155.4°175.0°
N3C18C19N4148.1°180.0°
H21N3C18C1961.1°25.0°
H21N3C18C2058.3°95.0°
H21N3C18H22179.0°145.0°
C19C18C20H22119.3°120.0°
C18C19O10N4178.7°180.0°
C19C18C20C21156.7°175.0°
C19C18C20H2382.4°65.0°
C19C18C20H2435.9°55.0°
C18C19N4C23178.8°180.0°
C18C19N4H281.2°0.0°
C19C18N3C14118.9°155.0°
C20C18C19O1089.5°120.0°
C18C20C21H23120.8°120.0°
C18C20C21H24120.8°120.0°
C18C20H23H24117.5°119.9°
C18C20C21C22178.5°180.0°
C18C20C21H2561.2°60.1°
C18C20C21H2658.2°60.0°
C20C18N3C14121.7°85.0°
C20C18C19N491.8°60.0°
H22C18C19O10151.1°120.1°
H22C18C20C2137.4°55.0°
H22C18C20H23158.2°175.0°
H22C18C20H2483.4°65.0°
H22C18N3C141.0°35.0°
H22C18C19N427.6°60.0°
O10C19N4C232.5°0.0°
O10C19N4H28177.5°179.9°
C21C20H23H24117.5°120.1°
C20C21C22H25120.3°119.9°
C20C21C22H26120.3°120.0°
C20C21H25H26119.2°120.1°
C20C21C22O1153.7°0.1°
C20C21C22O12126.1°180.0°
H23C20C21C2257.7°60.0°
H23C20C21H25177.9°179.9°
H23C20C21H2662.6°60.0°
H24C20C21C2260.7°60.0°
H24C20C21H2559.6°59.9°
H24C20C21H26179.0°180.0°
C22C21H25H26119.1°120.0°
C21C22O11O12179.8°179.9°
C21C22O12H27179.7°180.0°
H25C21C22O1166.6°120.0°
H25C21C22O12113.7°60.1°
H26C21C22O11174.0°119.9°
H26C21C22O125.8°59.9°
O11C22O12H270.0°0.1°
C23N4H28C19180.0°180.0°
N4C23C24C25121.0°120.0°
N4C23C24H29120.4°120.1°
N4C23C25H29124.4°120.0°
N4C23C24O1335.3°0.0°
N4C23C24O1446.0°180.0°
N4C23C25C2659.5°175.0°
N4C23C25C27179.7°65.0°
N4C23C25H3060.8°55.0°
H28N4C23C2467.0°94.9°
H28N4C23C2549.6°25.0°
H28N4C23H29173.2°145.0°
C24C23C25H29118.9°120.0°
C23C24O13O14111.1°180.0°
C24C23C25C26176.2°65.0°
C24C23C25C2763.7°55.1°
C24C23C25H3055.8°175.0°
C23C24O14H3935.4°180.0°
C24C23N4C19113.0°85.0°
C25C23C24O13156.3°120.0°
C25C23C24O1475.0°59.9°
C23C25C26C27121.5°120.0°
C23C25C26H30120.0°120.0°
C23C25C27H30119.3°120.0°
C23C25C26C28177.7°175.0°
C23C25C26H3162.0°65.0°
C23C25C26H3257.4°55.0°
C23C25C27H33180.0°60.0°
C23C25C27H3460.0°180.0°
C23C25C27H3560.0°60.0°
C25C23N4C19130.4°155.0°
H29C23C24O1385.1°120.1°
H29C23C24O14166.4°60.0°
H29C23C25C2664.9°55.0°
H29C23C25C2755.3°175.0°
H29C23C25H30174.8°65.1°
H29C23N4C196.8°35.1°
O13C24O14H390.0°0.0°
C26C25C27H30118.6°120.0°
C25C26C28H31120.4°120.1°
C25C26C28H32120.3°120.0°
C25C26H31H32119.0°120.0°
C26C25C27H3357.9°60.0°
C26C25C27H34177.9°60.0°
C26C25C27H3562.1°180.0°
C25C26C28H36180.0°180.0°
C25C26C28H3760.0°59.9°
C25C26C28H3860.0°60.1°
C27C25C26C2860.8°65.0°
C27C25C26H3159.6°55.0°
C27C25C26H32178.9°175.0°
C25C27H33H34120.0°120.0°
C25C27H33H35120.0°120.0°
C25C27H34H35120.0°120.0°
H30C25C26C2857.7°54.9°
H30C25C26H31178.0°175.0°
H30C25C26H3262.6°65.0°
H30C25C27H3360.7°180.0°
H30C25C27H3459.3°60.0°
H30C25C27H35179.3°60.0°
C28C26H31H32119.0°120.0°
C26C28H36H37120.0°120.0°
C26C28H36H38120.0°119.9°
C26C28H37H38120.0°120.0°
H31C26C28H3659.6°60.0°
H31C26C28H37179.6°180.0°
H31C26C28H3860.3°60.0°
H32C26C28H3659.7°60.0°
H32C26C28H3760.3°60.0°
H32C26C28H38179.7°180.0°
H33C27H34H35120.0°120.0°
H36C28H37H38120.0°120.0°

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon