Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_000331

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1O1doub1.22Å1.25Å
C1O2sing1.35Å1.39Å
O2C2sing1.45Å1.43Å
C2C3sing1.51Å1.49Å
C2H1sing1.09Å1.10Å
C2H2sing1.09Å1.10Å
C3C4doub1.38Å1.45ÅAromatic
C3C8sing1.38Å1.46ÅAromatic
C4C5sing1.38Å1.44ÅAromatic
C4H3sing1.08Å1.08Å
C5C6doub1.38Å1.45ÅAromatic
C5H4sing1.08Å1.08Å
C6C7sing1.38Å1.45ÅAromatic
C6H5sing1.08Å1.08Å
C7C8doub1.38Å1.45ÅAromatic
C7H6sing1.08Å1.08Å
C8H7sing1.08Å1.08Å
N1C9sing1.46Å1.43Å
N1H8sing0.97Å1.00Å
C9C10sing1.51Å1.57Å
C9C11sing1.53Å1.51Å
C9H9sing1.09Å1.10Å
C10O3doub1.21Å1.25Å
C11C12sing1.51Å1.53Å
C11H10sing1.09Å1.10Å
C11H11sing1.09Å1.10Å
C12O4doub1.21Å1.32Å
C12O5sing1.34Å1.30Å
O5H12sing0.97Å0.95Å
N2C13sing1.47Å1.50Å
N2H13sing0.97Å1.00Å
C13C14sing1.51Å1.55Å
C13C15sing1.53Å1.56Å
C13H14sing1.09Å1.10Å
C14O6doub1.21Å1.25Å
C15C16sing1.53Å1.55Å
C15H15sing1.09Å1.10Å
C15H16sing1.09Å1.10Å
C16C17sing1.51Å1.56Å
C16H17sing1.09Å1.10Å
C16H18sing1.09Å1.10Å
C17O7doub1.21Å1.30Å
C17O8sing1.34Å1.31Å
O8H19sing0.97Å0.95Å
N3C18sing1.47Å1.49Å
N3H20sing0.97Å1.00Å
C18C19sing1.51Å1.47Å
C18C20sing1.53Å1.54Å
C18H21sing1.09Å1.10Å
C19O9doub1.21Å1.23Å
C20C21sing1.53Å1.53Å
C20C22sing1.53Å1.53Å
C20H22sing1.09Å1.10Å
C21H23sing1.09Å1.10Å
C21H24sing1.09Å1.10Å
C21H25sing1.09Å1.10Å
C22H26sing1.09Å1.10Å
C22H27sing1.09Å1.10Å
C22H28sing1.09Å1.10Å
N4C23sing1.47Å1.40Å
N4H29sing0.97Å1.00Å
C23C24sing1.51Å1.54Å
C23C25sing1.53Å1.54Å
C23H30sing1.09Å1.10Å
C24O10doub1.21Å1.30Å
C24H31sing1.08Å1.08Å
C25C26sing1.51Å1.54Å
C25H32sing1.09Å1.10Å
C25H33sing1.09Å1.10Å
C26O11doub1.21Å1.29Å
C26O12sing1.34Å1.29Å
O12H34sing0.97Å0.95Å
C1N1sing1.35Å1.27Å
C19N4sing1.35Å1.27Å
C10N2sing1.35Å1.32Å
C14N3sing1.35Å1.33Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C1O2124.4°120.0°
O1C1N1123.6°120.0°
C1O2C2124.5°117.0°
O2C1N1112.0°120.0°
O2C2C3101.8°109.4°
O2C2H1111.3°109.4°
O2C2H2111.3°109.5°
C3C2H1111.3°109.5°
C3C2H2111.4°109.5°
C2C3C4119.9°120.0°
C2C3C8120.7°120.0°
H1C2H2109.5°109.5°
C4C3C8119.5°120.0°
C3C4C5120.0°120.0°
C3C4H3120.0°120.0°
C3C8C7120.7°120.0°
C3C8H7119.6°120.0°
C5C4H3120.0°120.0°
C4C5C6120.7°120.0°
C4C5H4119.7°120.0°
C6C5H4119.7°120.0°
C5C6C7120.0°120.0°
C5C6H5120.0°120.0°
C7C6H5120.0°120.0°
C6C7C8119.3°120.0°
C6C7H6120.4°120.0°
C8C7H6120.4°120.0°
C7C8H7119.7°120.0°
C9N1H8118.6°120.0°
N1C9C1098.1°109.5°
N1C9C11115.3°109.5°
N1C9H9109.6°109.5°
C9N1C1122.8°120.0°
H8N1C1118.6°120.0°
C10C9C11116.9°109.5°
C10C9H9107.8°109.4°
C9C10O3120.9°119.9°
C9C10N2116.1°120.0°
C11C9H9108.5°109.4°
C9C11C12114.7°109.5°
C9C11H10108.1°109.5°
C9C11H11108.2°109.4°
O3C10N2122.6°120.0°
C12C11H10108.2°109.5°
C12C11H11108.1°109.4°
C11C12O4119.5°120.0°
C11C12O5120.0°120.0°
H10C11H11109.5°109.5°
O4C12O5120.6°120.0°
C12O5H12109.5°117.0°
C13N2H13117.5°120.0°
N2C13C14107.1°109.4°
N2C13C15112.7°109.5°
N2C13H14109.8°109.4°
C13N2C10125.1°120.0°
H13N2C10117.4°120.0°
C14C13C15109.0°109.5°
C14C13H14109.2°109.5°
C13C14O6121.4°120.1°
C13C14N3116.3°120.0°
C15C13H14109.0°109.5°
C13C15C16116.3°109.5°
C13C15H15107.8°109.5°
C13C15H16107.7°109.5°
O6C14N3122.3°120.0°
C16C15H15107.7°109.4°
C16C15H16107.7°109.5°
C15C16C17117.7°109.5°
C15C16H17107.4°109.4°
C15C16H18107.4°109.4°
H15C15H16109.4°109.5°
C17C16H17107.4°109.5°
C17C16H18107.4°109.5°
C16C17O7121.8°120.0°
C16C17O8119.0°120.0°
H17C16H18109.5°109.4°
O7C17O8119.2°120.0°
C17O8H19109.5°117.0°
C18N3H20119.4°120.0°
N3C18C19110.1°109.4°
N3C18C20107.7°109.5°
N3C18H21107.2°109.4°
C18N3C14121.1°120.0°
H20N3C14119.4°120.0°
C19C18C20117.4°109.5°
C19C18H21107.4°109.5°
C18C19O9121.9°120.1°
C18C19N4110.5°120.0°
C20C18H21106.7°109.5°
C18C20C21112.8°109.5°
C18C20C22113.1°109.5°
C18C20H22108.3°109.5°
O9C19N4127.4°120.0°
C21C20C22105.6°109.5°
C21C20H22108.4°109.5°
C20C21H23109.5°109.5°
C20C21H24109.5°109.4°
C20C21H25109.4°109.5°
C22C20H22108.4°109.4°
C20C22H26109.5°109.5°
C20C22H27109.5°109.5°
C20C22H28109.5°109.4°
H23C21H24109.5°109.5°
H23C21H25109.5°109.5°
H24C21H25109.5°109.5°
H26C22H27109.5°109.5°
H26C22H28109.5°109.5°
H27C22H28109.5°109.4°
C23N4H29119.5°120.0°
N4C23C24105.8°109.4°
N4C23C25109.9°109.5°
N4C23H30111.8°109.5°
C23N4C19121.1°120.0°
H29N4C19119.5°120.0°
C24C23C25109.9°109.5°
C24C23H30109.7°109.5°
C23C24O10121.4°120.0°
C23C24H31119.3°120.0°
C25C23H30109.8°109.5°
C23C25C26114.4°109.5°
C23C25H32108.2°109.5°
C23C25H33108.2°109.4°
O10C24H31119.3°120.0°
C26C25H32108.2°109.5°
C26C25H33108.2°109.5°
C25C26O11120.3°120.0°
C25C26O12120.0°120.0°
H32C25H33109.5°109.4°
O11C26O12119.7°120.0°
C26O12H34109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C1O2N1178.2°179.8°
O1C1O2C21.0°0.1°
O1C1N1C92.5°5.2°
O1C1N1H8177.5°174.8°
C1O2C2C3177.3°180.0°
C1O2C2H158.5°60.0°
C1O2C2H263.9°60.0°
O2C1N1C9175.7°174.6°
O2C1N1H84.2°5.4°
O2C2C3H1118.7°120.0°
O2C2C3H2118.7°120.0°
O2C2H1H2123.5°120.0°
O2C2C3C483.7°90.0°
O2C2C3C894.8°90.3°
C2O2C1N1179.2°179.7°
C3C2H1H2123.6°120.0°
C2C3C4C8178.5°179.7°
C2C3C4C5178.8°180.0°
C2C3C4H31.2°0.0°
C2C3C8C7178.9°179.8°
C2C3C8H71.1°0.0°
H1C2C3C435.1°30.0°
H1C2C3C8146.5°149.8°
H2C2C3C4157.6°150.0°
H2C2C3C823.9°29.7°
C3C4C5H3180.0°180.0°
C3C4C5C60.1°0.0°
C3C4C5H4179.9°180.0°
C4C3C8C70.4°0.4°
C4C3C8H7179.6°179.7°
C8C3C4C50.3°0.2°
C8C3C4H3179.6°179.7°
C3C8C7C60.3°0.4°
C3C8C7H7180.0°179.8°
C3C8C7H6179.7°179.7°
C4C5C6H4180.0°180.0°
C4C5C6C70.0°0.1°
C4C5C6H5180.0°180.0°
H3C4C5C6179.8°180.0°
H3C4C5H40.1°0.0°
C5C6C7H5180.0°180.0°
C5C6C7C80.1°0.1°
C5C6C7H6179.9°180.0°
H4C5C6C7180.0°180.0°
H4C5C6H50.0°0.0°
C6C7C8H6180.0°179.9°
C6C7C8H7179.7°179.8°
H5C6C7C8179.9°179.8°
H5C6C7H60.1°0.0°
H6C7C8H70.3°0.1°
C9N1H8C1180.0°180.0°
N1C9C10C11123.8°120.0°
N1C9C10H9113.7°120.0°
N1C9C11H9123.4°120.0°
N1C9C10O367.8°0.0°
N1C9C11C1268.7°64.1°
N1C9C11H10170.5°175.9°
N1C9C11H1152.0°55.9°
N1C9C10N2104.6°180.0°
H8N1C9C1062.5°93.4°
H8N1C9C1162.4°26.6°
H8N1C9H9174.8°146.6°
C10C9C11H9122.1°119.9°
C9C10O3N2171.9°180.0°
C10C9C11C12176.8°175.9°
C10C9C11H1056.0°55.8°
C10C9C11H1162.5°64.2°
C9C10N2C13175.6°180.0°
C9C10N2H134.4°0.0°
C10C9N1C1117.4°86.6°
C11C9C10O3168.4°120.0°
C9C11C12H10120.8°120.1°
C9C11C12H11120.8°119.9°
C9C11H10H11117.6°120.0°
C9C11C12O464.3°3.3°
C9C11C12O5116.9°176.6°
C11C9N1C1117.7°153.4°
C11C9C10N219.2°60.0°
H9C9C10O345.9°120.0°
H9C9C11C1254.6°56.0°
H9C9C11H1066.1°64.1°
H9C9C11H11175.4°175.9°
H9C9N1C15.1°33.4°
H9C9C10N2141.7°60.0°
O3C10N2C133.3°0.0°
O3C10N2H13176.7°179.9°
C12C11H10H11117.6°120.0°
C11C12O4O5178.9°179.9°
C11C12O5H12178.8°180.0°
H10C11C12O456.5°123.4°
H10C11C12O5122.4°56.5°
H11C11C12O4175.0°116.6°
H11C11C12O53.9°63.5°
O4C12O5H120.0°0.1°
C13N2H13C10180.0°179.9°
N2C13C14C15122.1°120.0°
N2C13C14H14118.9°119.9°
N2C13C15H14122.2°119.9°
N2C13C14O638.4°0.0°
N2C13C15C1650.7°65.0°
N2C13C15H1570.3°55.0°
N2C13C15H16171.7°175.0°
N2C13C14N3140.7°180.0°
H13N2C13C1431.4°25.1°
H13N2C13C1588.4°94.9°
H13N2C13H14149.8°145.1°
C14C13C15H14119.1°120.1°
C13C14O6N3179.0°180.0°
C14C13C15C16169.4°175.0°
C14C13C15H1548.4°65.0°
C14C13C15H1669.6°55.0°
C13C14N3C18179.0°180.0°
C13C14N3H201.0°0.0°
C14C13N2C10148.6°155.0°
C15C13C14O683.7°120.0°
C13C15C16H15121.0°120.0°
C13C15C16H16121.0°120.0°
C13C15H15H16116.9°120.0°
C13C15C16C17144.5°180.0°
C13C15C16H1723.4°60.0°
C13C15C16H1894.3°60.0°
C15C13N2C1091.6°85.0°
C15C13C14N397.2°60.0°
H14C13C14O6157.3°119.9°
H14C13C15C1671.5°55.0°
H14C13C15H15167.5°175.0°
H14C13C15H1649.5°65.0°
H14C13N2C1030.2°35.0°
H14C13C14N321.8°60.0°
O6C14N3C180.1°0.0°
O6C14N3H20179.9°180.0°
C16C15H15H16116.9°120.0°
C15C16C17H17121.2°120.0°
C15C16C17H18121.2°120.0°
C15C16H17H18116.3°119.9°
C15C16C17O727.9°0.0°
C15C16C17O8152.7°179.9°
H15C15C16C1794.4°60.0°
H15C15C16H17144.4°180.0°
H15C15C16H1826.8°60.1°
H16C15C16C1723.5°60.0°
H16C15C16H1797.6°60.0°
H16C15C16H18144.7°180.0°
C17C16H17H18116.3°120.0°
C16C17O7O8179.4°179.9°
C16C17O8H19179.4°180.0°
H17C16C17O7149.1°120.0°
H17C16C17O831.5°59.9°
H18C16C17O793.2°120.0°
H18C16C17O886.1°60.1°
O7C17O8H190.0°0.1°
C18N3H20C14180.0°180.0°
N3C18C19C20123.6°120.0°
N3C18C19H21116.4°120.0°
N3C18C20H21114.8°119.9°
N3C18C19O929.8°18.7°
N3C18C20C2156.1°65.5°
N3C18C20C2263.7°54.6°
N3C18C20H22176.1°174.5°
N3C18C19N4146.6°161.3°
H20N3C18C1988.2°25.0°
H20N3C18C2040.8°95.0°
H20N3C18H21155.3°145.0°
C19C18C20H21120.5°120.1°
C18C19O9N4175.8°180.0°
C19C18C20C21179.1°174.5°
C19C18C20C2261.1°65.4°
C19C18C20H2259.1°54.5°
C18C19N4C23175.6°174.6°
C18C19N4H294.4°5.3°
C19C18N3C1491.8°155.0°
C20C18C19O993.8°101.2°
C18C20C21C22124.1°120.0°
C18C20C21H22120.0°120.0°
C18C20C22H22120.1°120.0°
C18C20C21H23180.0°66.2°
C18C20C21H2460.0°173.8°
C18C20C21H2560.0°53.8°
C18C20C22H26180.0°60.0°
C18C20C22H2760.0°180.0°
C18C20C22H2860.0°60.1°
C20C18C19N489.8°78.7°
C20C18N3C14139.2°85.0°
H21C18C19O9146.2°138.7°
H21C18C20C2158.7°54.5°
H21C18C20C22178.5°174.5°
H21C18C20H2261.3°65.6°
H21C18C19N430.3°41.3°
H21C18N3C1424.8°35.0°
O9C19N4C238.2°5.4°
O9C19N4H29171.8°174.7°
C21C20C22H22116.0°120.0°
C20C21H23H24120.0°120.0°
C20C21H23H25120.0°120.0°
C20C21H24H25120.0°120.0°
C21C20C22H2656.1°180.0°
C21C20C22H2763.9°60.0°
C21C20C22H28176.1°60.0°
C22C20C21H2355.9°53.8°
C22C20C21H24176.0°66.2°
C22C20C21H2564.1°173.9°
C20C22H26H27120.0°120.0°
C20C22H26H28120.0°120.0°
C20C22H27H28120.0°119.9°
H22C20C21H2360.1°173.8°
H22C20C21H2460.0°53.8°
H22C20C21H25179.9°66.2°
H22C20C22H2659.9°60.0°
H22C20C22H27179.9°60.1°
H22C20C22H2860.2°180.0°
H23C21H24H25120.0°120.0°
H26C22H27H28120.0°120.0°
C23N4H29C19180.0°179.9°
N4C23C24C25118.5°120.0°
N4C23C24H30120.7°120.0°
N4C23C25H30123.3°120.0°
N4C23C24O10168.6°0.1°
N4C23C24H3111.5°180.0°
N4C23C25C2696.3°65.0°
N4C23C25H3224.4°55.0°
N4C23C25H33143.0°175.0°
H29N4C23C2479.1°95.0°
H29N4C23C2539.5°25.0°
H29N4C23H30161.6°145.0°
C24C23C25H30120.7°120.0°
C23C24O10H31180.0°179.9°
C24C23C25C26147.7°175.0°
C24C23C25H3291.6°64.9°
C24C23C25H3327.0°55.0°
C24C23N4C19100.9°85.0°
C25C23C24O1072.9°120.1°
C25C23C24H31107.1°60.1°
C23C25C26H32120.7°120.0°
C23C25C26H33120.7°120.0°
C23C25H32H33117.8°119.9°
C23C25C26O1111.9°0.0°
C23C25C26O12168.1°180.0°
C25C23N4C19140.5°155.0°
H30C23C24O1047.9°119.9°
H30C23C24H31132.1°60.0°
H30C23C25C2627.0°55.0°
H30C23C25H32147.7°175.0°
H30C23C25H3393.7°65.0°
H30C23N4C1918.4°35.0°
C26C25H32H33117.7°120.0°
C25C26O11O12179.9°180.0°
C25C26O12H34179.9°180.0°
H32C25C26O11132.7°120.0°
H32C25C26O1247.4°60.0°
H33C25C26O11108.8°120.0°
H33C25C26O1271.2°60.0°
O11C26O12H340.0°0.0°

221716

PDB entries from 2024-06-26

PDB statisticsPDBj update infoContact PDBjnumon