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PRD_000328

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1O1doub1.22Å1.26Å
C1O2sing1.35Å1.41Å
O2C2sing1.45Å1.45Å
C2C3sing1.51Å1.51Å
C2H21sing1.09Å1.10Å
C2H22sing1.09Å1.10Å
C3C4doub1.38Å1.41ÅAromatic
C3C8sing1.38Å1.37ÅAromatic
C4C5sing1.38Å1.38ÅAromatic
C4H41sing1.08Å1.08Å
C5C6doub1.38Å1.40ÅAromatic
C5H51sing1.08Å1.08Å
C6C7sing1.38Å1.41ÅAromatic
C6H61sing1.08Å1.08Å
C7C8doub1.38Å1.41ÅAromatic
C7H71sing1.08Å1.08Å
C8H81sing1.08Å1.08Å
NCAsing1.46Å1.44Å
NHsing0.97Å1.00Å
CACsing1.51Å1.56Å
CACBsing1.53Å1.54Å
CAHAsing1.09Å1.10Å
COdoub1.21Å1.28Å
CBHB1sing1.09Å1.10Å
CBHB2sing1.09Å1.10Å
CBHB3sing1.09Å1.10Å
N1CA1sing1.46Å1.46Å
N1H1sing0.97Å1.00Å
CA1C9sing1.51Å1.52Å
CA1CB1sing1.53Å1.55Å
CA1HA1sing1.09Å1.10Å
C9O3doub1.21Å1.21Å
CB1HB11sing1.09Å1.10Å
CB1HB21sing1.09Å1.10Å
CB1HB31sing1.09Å1.10Å
CA2CB2sing1.53Å1.58Å
CA2N2sing1.47Å1.43Å
CA2Psing1.82Å1.84Å
CA2HA2sing1.09Å1.10Å
CB2CGsing1.53Å1.56Å
CB2HB12sing1.09Å1.10Å
CB2HB22sing1.09Å1.10Å
CGCD1sing1.53Å1.53Å
CGCD2sing1.53Å1.55Å
CGHGsing1.09Å1.10Å
CD1HD11sing1.09Å1.10Å
CD1HD12sing1.09Å1.10Å
CD1HD13sing1.09Å1.10Å
CD2HD21sing1.09Å1.10Å
CD2HD22sing1.09Å1.10Å
CD2HD23sing1.09Å1.10Å
N2HN2sing0.97Å1.00Å
PO11doub1.48Å1.42Å
PO21sing1.61Å1.42Å
O21HO2sing0.97Å0.95Å
CA3CB3sing1.53Å1.55Å
CA3CCsing1.51Å1.52Å
CA3OPsing1.43Å1.47Å
CA3HA3sing1.09Å1.10Å
CB3CG1sing1.51Å1.51Å
CB3HB13sing1.09Å1.10Å
CB3HB23sing1.09Å1.10Å
CG1CD11doub1.38Å1.42ÅAromatic
CG1CD21sing1.38Å1.37ÅAromatic
CD11CE1sing1.38Å1.38ÅAromatic
CD11HD1sing1.08Å1.08Å
CD21CE2doub1.38Å1.37ÅAromatic
CD21HD2sing1.08Å1.08Å
CE1CZdoub1.38Å1.38ÅAromatic
CE1HE1sing1.08Å1.08Å
CE2CZsing1.38Å1.39ÅAromatic
CE2HE2sing1.08Å1.08Å
CZHZsing1.08Å1.08Å
CCOSsing1.34Å1.39Å
CCO4doub1.21Å1.20Å
CSOSsing1.45Å1.36Å
CSHS1sing1.09Å1.10Å
CSHS2sing1.09Å1.10Å
CSHS3sing1.09Å1.10Å
C1Nsing1.35Å1.29Å
CN1sing1.35Å1.31Å
C9N2sing1.35Å1.37Å
POPsing1.61Å1.57Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C1O2116.6°120.0°
O1C1N122.4°120.0°
C1O2C2113.6°117.0°
O2C1N120.9°120.0°
O2C2C3106.9°109.5°
O2C2H21110.3°109.4°
O2C2H22110.3°109.5°
C3C2H21110.4°109.5°
C3C2H22110.4°109.5°
C2C3C4119.9°120.0°
C2C3C8117.2°120.0°
H21C2H22108.6°109.5°
C4C3C8122.9°120.0°
C3C4C5119.4°120.0°
C3C4H41120.3°120.0°
C3C8C7118.1°120.0°
C3C8H81121.0°120.0°
C5C4H41120.3°120.0°
C4C5C6118.9°120.0°
C4C5H51120.6°120.0°
C6C5H51120.6°120.0°
C5C6C7121.5°120.0°
C5C6H61119.2°120.0°
C7C6H61119.3°120.0°
C6C7C8119.2°120.0°
C6C7H71120.4°120.0°
C8C7H71120.4°119.9°
C7C8H81121.0°120.0°
CANH119.2°120.0°
NCAC110.0°109.4°
NCACB103.1°109.5°
NCAHA112.5°109.5°
CANC1121.7°120.0°
HNC1119.1°120.0°
CCACB107.1°109.5°
CCAHA108.9°109.5°
CACO119.4°120.0°
CACN1114.4°120.0°
CBCAHA115.2°109.5°
CACBHB1109.5°109.4°
CACBHB2109.4°109.4°
CACBHB3109.5°109.5°
OCN1126.2°120.0°
HB1CBHB2109.5°109.5°
HB1CBHB3109.5°109.5°
HB2CBHB3109.5°109.5°
CA1N1H1120.1°119.9°
N1CA1C9105.3°109.5°
N1CA1CB1113.0°109.5°
N1CA1HA1112.3°109.4°
CA1N1C119.8°120.0°
H1N1C120.1°120.0°
C9CA1CB1115.6°109.5°
C9CA1HA1109.6°109.4°
CA1C9O3119.8°120.0°
CA1C9N2117.7°120.0°
CB1CA1HA1101.2°109.5°
CA1CB1HB11109.5°109.5°
CA1CB1HB21109.4°109.5°
CA1CB1HB31109.4°109.5°
O3C9N2122.4°120.0°
HB11CB1HB21109.5°109.5°
HB11CB1HB31109.5°109.4°
HB21CB1HB31109.5°109.5°
CB2CA2N2110.3°109.5°
CB2CA2P111.1°109.5°
CB2CA2HA2108.3°109.5°
CA2CB2CG116.0°109.5°
CA2CB2HB12107.3°109.5°
CA2CB2HB22107.4°109.5°
N2CA2P111.1°109.5°
N2CA2HA2108.4°109.4°
CA2N2HN2117.7°120.0°
CA2N2C9124.7°120.0°
PCA2HA2107.5°109.4°
CA2PO11108.6°109.5°
CA2PO21106.1°109.5°
CA2POP97.7°109.5°
CGCB2HB12107.3°109.5°
CGCB2HB22107.3°109.4°
CB2CGCD1106.0°109.4°
CB2CGCD2111.1°109.5°
CB2CGHG111.7°109.4°
HB12CB2HB22111.5°109.5°
CD1CGCD2112.2°109.5°
CD1CGHG110.6°109.4°
CGCD1HD11109.5°109.5°
CGCD1HD12109.5°109.5°
CGCD1HD13109.5°109.5°
CD2CGHG105.4°109.5°
CGCD2HD21109.5°109.5°
CGCD2HD22109.5°109.5°
CGCD2HD23109.5°109.5°
HD11CD1HD12109.5°109.5°
HD11CD1HD13109.5°109.5°
HD12CD1HD13109.4°109.4°
HD21CD2HD22109.4°109.4°
HD21CD2HD23109.5°109.5°
HD22CD2HD23109.5°109.5°
HN2N2C9117.7°120.0°
O11PO21123.6°109.4°
O11POP106.2°109.4°
PO21HO2109.5°114.0°
O21POP111.5°109.5°
CB3CA3CC106.6°109.5°
CB3CA3OP108.6°109.5°
CB3CA3HA3112.2°109.4°
CA3CB3CG1114.2°109.5°
CA3CB3HB13107.9°109.5°
CA3CB3HB23107.9°109.5°
CCCA3OP110.3°109.5°
CCCA3HA3110.5°109.5°
CA3CCOS122.9°120.0°
CA3CCO4122.7°120.0°
OPCA3HA3108.6°109.5°
CA3OPP118.1°123.0°
CG1CB3HB13107.9°109.5°
CG1CB3HB23107.9°109.5°
CB3CG1CD11115.7°120.0°
CB3CG1CD21125.1°120.0°
HB13CB3HB23111.0°109.5°
CD11CG1CD21119.3°120.0°
CG1CD11CE1121.8°120.0°
CG1CD11HD1119.1°120.0°
CG1CD21CE2119.3°120.0°
CG1CD21HD2120.3°120.1°
CE1CD11HD1119.1°120.0°
CD11CE1CZ117.4°120.1°
CD11CE1HE1121.3°120.0°
CE2CD21HD2120.4°120.0°
CD21CE2CZ121.1°120.0°
CD21CE2HE2119.5°120.0°
CZCE1HE1121.3°120.0°
CE1CZCE2121.2°119.9°
CE1CZHZ119.4°120.0°
CZCE2HE2119.5°120.0°
CE2CZHZ119.4°120.0°
OSCCO4114.4°120.0°
CCOSCS126.8°117.0°
OSCSHS1109.5°109.5°
OSCSHS2109.4°109.5°
OSCSHS3109.5°109.5°
HS1CSHS2109.4°109.5°
HS1CSHS3109.5°109.5°
HS2CSHS3109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C1O2N175.5°179.7°
O1C1O2C218.0°0.0°
O1C1NCA1.4°0.1°
O1C1NH178.6°180.0°
C1O2C2C3114.7°180.0°
C1O2C2H215.3°60.0°
C1O2C2H22125.3°60.0°
O2C1NCA176.7°179.7°
O2C1NH3.3°0.3°
O2C2C3H21120.0°120.0°
O2C2C3H22120.0°120.0°
O2C2H21H22121.0°120.0°
O2C2C3C4138.6°90.0°
O2C2C3C842.3°90.3°
C2O2C1N157.5°179.7°
C3C2H21H22121.1°120.0°
C2C3C4C8179.1°179.8°
C2C3C4C5180.0°180.0°
C2C3C4H410.0°0.1°
C2C3C8C7179.9°179.8°
C2C3C8H810.0°0.1°
H21C2C3C418.6°30.0°
H21C2C3C8162.3°149.8°
H22C2C3C4101.5°150.0°
H22C2C3C877.7°29.7°
C3C4C5H41180.0°179.9°
C3C4C5C61.4°0.0°
C3C4C5H51178.6°180.0°
C4C3C8C70.9°0.4°
C4C3C8H81179.1°179.7°
C8C3C4C50.9°0.2°
C8C3C4H41179.1°179.7°
C3C8C7C61.5°0.4°
C3C8C7H81180.0°179.8°
C3C8C7H71178.5°179.8°
C4C5C6H51180.0°180.0°
C4C5C6C72.1°0.0°
C4C5C6H61177.9°180.0°
H41C4C5C6178.6°179.9°
H41C4C5H511.4°0.1°
C5C6C7H61180.0°180.0°
C5C6C7C82.1°0.2°
C5C6C7H71177.9°180.0°
H51C5C6C7177.9°180.0°
H51C5C6H612.1°0.0°
C6C7C8H71180.0°179.8°
C6C7C8H81178.6°179.7°
H61C6C7C8177.9°179.8°
H61C6C7H712.1°0.0°
H71C7C8H811.5°0.1°
CANHC1180.0°180.0°
NCACCB111.3°120.0°
NCACHA123.6°120.0°
NCACBHA122.9°120.0°
NCACO15.9°0.0°
NCACBHB1180.0°180.0°
NCACBHB260.0°60.0°
NCACBHB360.0°60.0°
NCACN1163.9°180.0°
HNCAC99.6°25.0°
HNCACB14.3°95.0°
HNCAHA138.9°145.0°
CCACBHA121.2°120.0°
CACON1179.7°180.0°
CCACBHB164.0°60.0°
CCACBHB2176.0°180.0°
CCACBHB356.0°60.0°
CACN1CA1177.8°180.0°
CACN1H12.2°0.0°
CCANC180.4°155.0°
CBCACO95.4°120.0°
CACBHB1HB2120.0°120.0°
CACBHB1HB3120.0°120.0°
CACBHB2HB3120.0°120.0°
CBCANC1165.7°85.0°
CBCACN184.9°60.0°
HACACO139.5°120.0°
HACACBHB157.2°60.0°
HACACBHB262.9°60.0°
HACACBHB3177.2°180.0°
HACANC141.1°35.0°
HACACN140.2°60.0°
OCN1CA12.4°0.0°
OCN1H1177.5°180.0°
HB1CBHB2HB3120.0°120.1°
CA1N1H1C180.0°180.0°
N1CA1C9CB1125.5°120.1°
N1CA1C9HA1121.0°120.0°
N1CA1CB1HA1120.3°120.0°
N1CA1C9O392.2°0.1°
N1CA1CB1HB11180.0°60.0°
N1CA1CB1HB2160.0°179.9°
N1CA1CB1HB3160.0°59.9°
N1CA1C9N285.7°180.0°
H1N1CA1C944.8°25.0°
H1N1CA1CB182.3°95.1°
H1N1CA1HA1164.0°145.0°
C9CA1CB1HA1118.2°120.0°
CA1C9O3N2177.9°179.9°
C9CA1CB1HB1158.6°60.0°
C9CA1CB1HB21178.6°60.0°
C9CA1CB1HB3161.4°180.0°
CA1C9N2CA2177.5°180.0°
CA1C9N2HN22.5°0.0°
C9CA1N1C135.2°155.0°
CB1CA1C9O333.3°120.0°
CA1CB1HB11HB21120.0°120.0°
CA1CB1HB11HB31120.0°120.0°
CA1CB1HB21HB31120.0°120.0°
CB1CA1N1C97.7°85.0°
CB1CA1C9N2148.7°59.9°
HA1CA1C9O3146.8°120.1°
HA1CA1CB1HB1159.7°180.0°
HA1CA1CB1HB2160.3°60.0°
HA1CA1CB1HB31179.7°60.0°
HA1CA1N1C16.1°35.0°
HA1CA1C9N235.3°60.0°
O3C9N2CA20.4°0.1°
O3C9N2HN2179.6°179.9°
HB11CB1HB21HB31120.0°120.0°
CB2CA2N2P123.7°120.0°
CB2CA2N2HA2118.4°120.1°
CB2CA2PHA2118.3°120.1°
CA2CB2CGHB12120.0°120.0°
CA2CB2CGHB22120.0°120.0°
CA2CB2HB12HB22117.4°120.0°
CA2CB2CGCD1174.7°65.0°
CA2CB2CGCD263.2°175.0°
CA2CB2CGHG54.2°55.0°
CB2CA2N2HN258.3°45.0°
CB2CA2PO1155.6°55.0°
CB2CA2PO2179.2°175.0°
CB2CA2N2C9121.7°135.0°
CB2CA2POP165.6°65.0°
N2CA2PHA2118.5°119.9°
N2CA2CB2CG46.9°180.0°
N2CA2CB2HB1273.1°60.0°
N2CA2CB2HB22166.9°60.0°
CA2N2HN2C9180.0°180.0°
N2CA2PO11178.8°65.0°
N2CA2PO2144.0°55.0°
N2CA2POP71.2°175.0°
PCA2CB2CG170.5°60.0°
PCA2CB2HB1250.6°180.0°
PCA2CB2HB2269.5°60.0°
PCA2N2HN265.4°75.0°
CA2PO11O21125.1°120.0°
CA2PO11OP104.2°120.0°
CA2PO21OP105.3°120.1°
CA2PO21HO2126.2°60.0°
CA2POPCA3149.5°175.0°
PCA2N2C9114.6°105.0°
HA2CA2CB2CG71.6°60.0°
HA2CA2CB2HB12168.4°60.0°
HA2CA2CB2HB2248.4°180.0°
HA2CA2N2HN2176.7°165.1°
HA2CA2PO1162.7°175.0°
HA2CA2PO21162.4°65.0°
HA2CA2N2C93.3°14.9°
HA2CA2POP47.3°55.1°
CGCB2HB12HB22117.3°120.0°
CB2CGCD1CD2121.5°120.0°
CB2CGCD1HG121.2°119.9°
CB2CGCD2HG121.1°120.0°
CB2CGCD1HD11180.0°179.9°
CB2CGCD1HD1260.0°60.0°
CB2CGCD1HD1360.0°60.0°
CB2CGCD2HD21180.0°60.0°
CB2CGCD2HD2260.0°180.0°
CB2CGCD2HD2360.0°60.0°
HB12CB2CGCD154.7°55.0°
HB12CB2CGCD2176.9°65.0°
HB12CB2CGHG65.8°174.9°
HB22CB2CGCD165.3°175.0°
HB22CB2CGCD256.9°55.0°
HB22CB2CGHG174.2°65.1°
CD1CGCD2HG120.4°120.0°
CGCD1HD11HD12120.0°120.0°
CGCD1HD11HD13120.0°120.0°
CGCD1HD12HD13120.0°120.0°
CD1CGCD2HD2161.5°180.0°
CD1CGCD2HD2258.5°60.0°
CD1CGCD2HD23178.5°60.0°
CD2CGCD1HD1158.6°60.0°
CD2CGCD1HD12178.6°180.0°
CD2CGCD1HD1361.5°60.0°
CGCD2HD21HD22120.0°120.0°
CGCD2HD21HD23120.0°120.0°
CGCD2HD22HD23120.0°120.0°
HGCGCD1HD1158.8°60.0°
HGCGCD1HD1261.2°59.9°
HGCGCD1HD13178.8°179.9°
HGCGCD2HD2158.9°60.0°
HGCGCD2HD22178.9°60.0°
HGCGCD2HD2361.1°180.0°
HD11CD1HD12HD13120.0°120.0°
HD21CD2HD22HD23120.0°120.0°
O11PO21OP128.5°119.9°
O11PO21HO20.0°180.0°
O11POPCA337.5°55.0°
O21POPCA399.8°65.0°
HO2O21POP128.5°60.1°
CB3CA3CCOP117.7°120.0°
CB3CA3CCHA3122.2°119.9°
CB3CA3OPHA3122.3°119.9°
CA3CB3CG1HB13120.0°120.0°
CA3CB3CG1HB23120.0°120.0°
CA3CB3HB13HB23118.1°120.0°
CA3CB3CG1CD11104.4°90.0°
CA3CB3CG1CD2175.6°90.3°
CB3CA3CCOS55.6°65.0°
CB3CA3CCO4124.2°115.0°
CB3CA3OPP124.2°120.0°
CCCA3OPHA3121.2°120.1°
CCCA3CB3CG161.2°175.0°
CCCA3CB3HB1358.7°65.0°
CCCA3CB3HB23178.8°55.0°
CA3CCOSO4179.8°180.0°
CA3CCOSCS158.5°180.0°
CCCA3OPP119.3°120.0°
OPCA3CB3CG157.6°65.0°
OPCA3CB3HB13177.6°55.0°
OPCA3CB3HB2362.4°175.0°
OPCA3CCOS173.3°175.0°
OPCA3CCO46.5°5.0°
HA3CA3CB3CG1177.6°55.0°
HA3CA3CB3HB1362.4°175.0°
HA3CA3CB3HB2357.7°65.0°
HA3CA3CCOS66.6°54.9°
HA3CA3CCO4113.6°125.1°
HA3CA3OPP2.0°0.1°
CG1CB3HB13HB23118.1°120.0°
CB3CG1CD11CD21179.9°179.7°
CB3CG1CD11CE1179.8°180.0°
CB3CG1CD11HD10.2°0.1°
CB3CG1CD21CE2179.2°180.0°
CB3CG1CD21HD20.8°0.0°
HB13CB3CG1CD1115.6°30.0°
HB13CB3CG1CD21164.4°149.7°
HB23CB3CG1CD11135.6°150.0°
HB23CB3CG1CD2144.4°29.7°
CG1CD11CE1HD1180.0°179.9°
CD11CG1CD21CE20.7°0.3°
CD11CG1CD21HD2179.3°179.7°
CG1CD11CE1CZ0.1°0.0°
CG1CD11CE1HE1179.9°179.9°
CD21CG1CD11CE10.3°0.3°
CD21CG1CD11HD1179.7°179.8°
CG1CD21CE2HD2180.0°179.9°
CG1CD21CE2CZ2.1°0.0°
CG1CD21CE2HE2177.9°180.0°
CD11CE1CZHE1180.0°179.9°
CD11CE1CZCE21.5°0.3°
CD11CE1CZHZ178.5°180.0°
HD1CD11CE1CZ179.9°179.9°
HD1CD11CE1HE10.1°0.0°
CD21CE2CZCE12.5°0.3°
CD21CE2CZHE2180.0°180.0°
CD21CE2CZHZ177.5°180.0°
HD2CD21CE2CZ178.0°180.0°
HD2CD21CE2HE22.0°0.0°
CE1CZCE2HZ180.0°179.7°
CE1CZCE2HE2177.5°179.7°
HE1CE1CZCE2178.5°179.8°
HE1CE1CZHZ1.5°0.1°
HE2CE2CZHZ2.5°0.0°
CCOSCSHS1180.0°60.0°
CCOSCSHS260.0°60.0°
CCOSCSHS360.0°180.0°
O4CCOSCS21.7°0.0°
OSCSHS1HS2120.0°120.0°
OSCSHS1HS3120.0°120.0°
OSCSHS2HS3120.0°120.0°
HS1CSHS2HS3120.0°120.0°

227344

PDB entries from 2024-11-13

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