Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

PRD_000259

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1O1doub1.21Å1.21Å
C1C2sing1.51Å1.58Å
C2H1sing1.09Å1.10Å
C2H2sing1.09Å1.10Å
C2H3sing1.09Å1.10Å
N1C3sing1.46Å1.43Å
N1H4sing0.97Å1.00Å
C3C4sing1.51Å1.58Å
C3C5sing1.53Å1.55Å
C3H5sing1.09Å1.10Å
C4O2doub1.21Å1.22Å
C5C6sing1.51Å1.51Å
C5H6sing1.09Å1.10Å
C5H7sing1.09Å1.10Å
C6C7doub1.34Å1.36ÅAromatic
C6C8sing1.47Å1.45ÅAromatic
C7N2sing1.37Å1.38ÅAromatic
C7H8sing1.08Å1.08Å
C8C9doub1.41Å1.41ÅAromatic
C8C10sing1.40Å1.41ÅAromatic
N2C9sing1.38Å1.36ÅAromatic
N2H9sing0.97Å1.00Å
C9C11sing1.39Å1.40ÅAromatic
C10C12doub1.37Å1.38ÅAromatic
C10H10sing1.08Å1.08Å
C11C13doub1.38Å1.37ÅAromatic
C11H11sing1.08Å1.08Å
C12C13sing1.39Å1.38ÅAromatic
C12H12sing1.08Å1.08Å
C13H13sing1.08Å1.08Å
N3C14sing1.46Å1.49Å
N3H14sing0.97Å1.00Å
C14C15sing1.51Å1.52Å
C14C16sing1.53Å1.53Å
C14H15sing1.09Å1.10Å
C15O3doub1.21Å1.22Å
C16C17sing1.53Å1.52Å
C16H16sing1.09Å1.10Å
C16H17sing1.09Å1.10Å
C17C18sing1.51Å1.52Å
C17H18sing1.09Å1.10Å
C17H19sing1.09Å1.10Å
C18O4doub1.21Å1.25Å
C18O5sing1.34Å1.25Å
O5H20sing0.97Å0.95Å
N4C19sing1.47Å1.46Å
N4H21sing0.97Å1.00Å
C19C20sing1.51Å1.53Å
C19C21sing1.53Å1.54Å
C19H22sing1.09Å1.10Å
C20O6doub1.21Å1.23Å
C21C22sing1.51Å1.50Å
C21H23sing1.09Å1.10Å
C21H24sing1.09Å1.10Å
C22N5sing1.34Å1.38ÅAromatic
C22C23doub1.35Å1.35ÅAromatic
N5C24doub1.30Å1.32ÅAromatic
N5H25sing0.97Å1.00Å
C23N6sing1.37Å1.37ÅAromatic
C23H26sing1.08Å1.08Å
C24N6sing1.35Å1.32ÅAromatic
C24H27sing1.08Å1.08Å
N6H28sing0.97Å1.00Å
C25O7sing1.43Å1.44Å
C25C26sing1.53Å1.52Å
C25H29sing1.09Å1.10Å
C25H30sing1.09Å1.10Å
C26N7sing1.47Å1.46Å
N7H31sing0.97Å1.00Å
O7H32sing0.97Å0.95Å
C27C26sing1.53Å1.53Å
C26H33sing1.09Å1.10Å
C27C28sing1.51Å1.52Å
C27H34sing1.09Å1.10Å
C27H35sing1.09Å1.10Å
C28O9doub1.21Å1.25Å
C28O8sing1.34Å1.25Å
O8H36sing0.97Å0.95Å
C1N1sing1.35Å1.24Å
C20N7sing1.35Å1.33Å
C4N3sing1.35Å1.36Å
C15N4sing1.35Å1.33Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1C1C2111.9°120.0°
O1C1N1138.5°120.0°
C1C2H1109.5°109.5°
C1C2H2109.5°109.5°
C1C2H3109.5°109.4°
C2C1N1104.8°120.0°
H1C2H2109.5°109.5°
H1C2H3109.5°109.5°
H2C2H3109.5°109.4°
C3N1H4102.9°120.0°
N1C3C4107.1°109.5°
N1C3C5115.0°109.5°
N1C3H5109.9°109.5°
C3N1C1154.3°120.0°
H4N1C1102.9°120.0°
C4C3C5108.3°109.5°
C4C3H5108.0°109.5°
C3C4O2120.6°120.0°
C3C4N3118.9°120.0°
C5C3H5108.3°109.5°
C3C5C6109.5°109.4°
C3C5H6109.5°109.5°
C3C5H7109.5°109.5°
O2C4N3120.5°120.1°
C6C5H6109.5°109.5°
C6C5H7109.5°109.5°
C5C6C7124.7°126.5°
C5C6C8128.6°126.5°
H6C5H7109.5°109.5°
C7C6C8106.6°107.0°
C6C7N2109.6°109.9°
C6C7H8125.2°125.0°
C6C8C9106.4°106.0°
C6C8C10137.1°134.0°
N2C7H8125.2°125.0°
C7N2C9109.5°109.9°
C7N2H9125.3°125.0°
C9C8C10116.5°119.9°
C8C9N2107.9°107.2°
C8C9C11123.2°119.3°
C8C10C12120.1°119.7°
C8C10H10120.0°120.1°
C9N2H9125.2°125.1°
N2C9C11128.9°133.5°
C9C11C13117.8°119.8°
C9C11H11121.1°120.1°
C12C10H10119.9°120.2°
C10C12C13121.6°120.5°
C10C12H12119.2°119.7°
C13C11H11121.1°120.1°
C11C13C12120.8°120.7°
C11C13H13119.6°119.7°
C13C12H12119.2°119.8°
C12C13H13119.6°119.7°
C14N3H14118.3°120.0°
N3C14C15107.0°109.5°
N3C14C16110.3°109.5°
N3C14H15110.6°109.5°
C14N3C4123.4°120.0°
H14N3C4118.3°120.0°
C15C14C16108.8°109.5°
C15C14H15110.1°109.4°
C14C15O3119.2°120.0°
C14C15N4118.4°120.0°
C16C14H15109.9°109.5°
C14C16C17114.0°109.4°
C14C16H16108.3°109.5°
C14C16H17108.3°109.5°
O3C15N4122.3°120.0°
C17C16H16108.3°109.4°
C17C16H17108.3°109.5°
C16C17C18112.6°109.4°
C16C17H18108.7°109.4°
C16C17H19108.7°109.5°
H16C16H17109.5°109.5°
C18C17H18108.7°109.5°
C18C17H19108.7°109.5°
C17C18O4118.5°120.0°
C17C18O5118.3°120.0°
H18C17H19109.5°109.5°
O4C18O5123.2°120.0°
C18O5H20109.5°117.0°
C19N4H21120.1°120.0°
N4C19C20114.2°109.5°
N4C19C21110.7°109.5°
N4C19H22107.8°109.5°
C19N4C15119.8°120.0°
H21N4C15120.1°120.1°
C20C19C21110.0°109.5°
C20C19H22107.0°109.4°
C19C20O6121.0°120.0°
C19C20N7115.6°120.0°
C21C19H22106.8°109.5°
C19C21C22114.1°109.5°
C19C21H23108.3°109.5°
C19C21H24108.3°109.5°
O6C20N7123.4°120.0°
C22C21H23108.3°109.5°
C22C21H24108.3°109.5°
C21C22N5122.8°126.0°
C21C22C23131.1°126.1°
H23C21H24109.5°109.4°
N5C22C23106.1°108.0°
C22N5C24109.4°109.3°
C22N5H25125.3°125.3°
C22C23N6107.2°106.8°
C22C23H26126.4°126.6°
C24N5H25125.3°125.4°
N5C24N6108.4°108.7°
N5C24H27125.8°125.7°
N6C23H26126.4°126.6°
C23N6C24108.9°107.2°
C23N6H28125.5°126.4°
N6C24H27125.8°125.7°
C24N6H28125.5°126.4°
O7C25C26110.5°109.5°
O7C25H29109.2°109.5°
O7C25H30109.2°109.4°
C25O7H32109.5°114.0°
C26C25H29109.2°109.5°
C26C25H30109.2°109.5°
C25C26N7112.2°109.5°
C25C26C27107.7°109.5°
C25C26H33108.4°109.5°
H29C25H30109.5°109.5°
C26N7H31118.5°120.0°
N7C26C27110.9°109.5°
N7C26H33109.2°109.5°
C26N7C20122.9°120.0°
H31N7C20118.6°120.0°
C27C26H33108.3°109.5°
C26C27C28113.0°109.5°
C26C27H34108.6°109.5°
C26C27H35108.6°109.5°
C28C27H34108.6°109.5°
C28C27H35108.6°109.4°
C27C28O9118.8°120.0°
C27C28O8118.4°120.0°
H34C27H35109.5°109.5°
O9C28O8122.8°120.0°
C28O8H36109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C1C2N1160.1°179.7°
O1C1C2H10.0°90.0°
O1C1C2H2120.0°149.9°
O1C1C2H3120.0°30.0°
O1C1N1C336.1°0.0°
O1C1N1H4143.8°180.0°
C1C2H1H2120.0°120.0°
C1C2H1H3120.0°120.0°
C1C2H2H3120.0°119.9°
C2C1N1C3172.3°179.7°
C2C1N1H47.7°0.3°
H1C2H2H3120.0°120.0°
H1C2C1N1160.1°89.7°
H2C2C1N140.1°30.3°
H3C2C1N179.9°150.2°
C3N1H4C1180.0°180.0°
N1C3C4C5124.6°120.0°
N1C3C4H5118.3°120.0°
N1C3C5H5123.3°120.0°
N1C3C4O269.3°20.0°
N1C3C5C680.0°65.0°
N1C3C5H639.9°55.0°
N1C3C5H7159.9°175.0°
N1C3C4N3111.5°160.0°
H4N1C3C4131.3°120.0°
H4N1C3C5108.2°120.0°
H4N1C3H514.3°0.0°
C4C3C5H5116.9°120.0°
C3C4O2N3179.2°180.0°
C4C3C5C6160.2°175.0°
C4C3C5H679.8°65.0°
C4C3C5H740.1°55.0°
C3C4N3C14179.0°180.0°
C3C4N3H141.0°0.1°
C4C3N1C148.7°60.0°
C5C3C4O255.3°100.0°
C3C5C6H6120.0°120.0°
C3C5C6H7120.0°120.0°
C3C5H6H7120.0°120.0°
C3C5C6C777.2°95.0°
C3C5C6C8105.2°84.7°
C5C3N1C171.8°60.0°
C5C3C4N3123.9°80.0°
H5C3C4O2172.4°140.0°
H5C3C5C643.3°55.0°
H5C3C5H6163.3°175.0°
H5C3C5H776.7°65.0°
H5C3N1C1165.7°180.0°
H5C3C4N36.8°40.0°
O2C4N3C140.2°0.0°
O2C4N3H14179.8°180.0°
C6C5H6H7120.0°120.0°
C5C6C7C8178.0°179.8°
C5C6C7N2176.9°180.0°
C5C6C7H83.1°0.0°
C5C6C8C9176.6°180.0°
C5C6C8C101.5°0.0°
H6C5C6C7162.8°145.0°
H6C5C6C814.8°35.2°
H7C5C6C742.8°25.0°
H7C5C6C8134.8°155.3°
C6C7N2H8180.0°179.9°
C7C6C8C91.3°0.3°
C7C6C8C10179.4°179.8°
C6C7N2C90.5°0.2°
C6C7N2H9179.5°180.0°
C8C6C7N21.1°0.3°
C8C6C7H8178.9°179.8°
C6C8C9C10178.5°179.9°
C6C8C9N21.0°0.2°
C6C8C9C11178.4°180.0°
C6C8C10C12178.1°180.0°
C6C8C10H101.9°0.1°
C7N2C9C80.4°0.0°
C7N2C9H9180.0°179.8°
C7N2C9C11179.0°179.8°
H8C7N2C9179.5°179.9°
H8C7N2H90.5°0.1°
C8C9N2C11179.4°179.8°
C8C9N2H9179.6°179.8°
C9C8C10C120.2°0.1°
C9C8C10H10179.8°180.0°
C8C9C11C130.2°0.0°
C8C9C11H11179.9°180.0°
C10C8C9N2179.6°179.9°
C10C8C9C110.2°0.1°
C8C10C12H10180.0°179.9°
C8C10C12C130.8°0.0°
C8C10C12H12179.2°180.0°
N2C9C11C13179.1°179.8°
N2C9C11H110.9°0.2°
H9N2C9C111.0°0.0°
C9C11C13H11180.0°180.0°
C9C11C13C120.8°0.1°
C9C11C13H13179.2°180.0°
C10C12C13C111.2°0.1°
C10C12C13H12180.0°180.0°
C10C12C13H13178.8°180.0°
H10C10C12C13179.2°179.9°
H10C10C12H120.8°0.1°
C11C13C12H13180.0°179.9°
C11C13C12H12178.8°180.0°
H11C11C13C12179.2°179.9°
H11C11C13H130.8°0.0°
H12C12C13H131.2°0.0°
C14N3H14C4180.0°179.9°
N3C14C15C16119.2°120.0°
N3C14C15H15120.3°120.0°
N3C14C16H15122.2°120.0°
N3C14C15O316.8°0.0°
N3C14C16C1735.3°65.0°
N3C14C16H1685.3°55.0°
N3C14C16H17156.0°175.0°
N3C14C15N4162.5°180.0°
H14N3C14C1564.1°25.0°
H14N3C14C1654.1°95.0°
H14N3C14H15175.9°145.0°
C15C14C16H15120.7°120.0°
C14C15O3N4179.3°180.0°
C15C14C16C17152.4°175.0°
C15C14C16H1631.8°65.0°
C15C14C16H1786.9°55.0°
C14C15N4C19178.9°180.0°
C14C15N4H211.1°0.0°
C15C14N3C4115.9°155.0°
C16C14C15O3136.0°120.0°
C14C16C17H16120.7°120.0°
C14C16C17H17120.7°120.0°
C14C16H16H17117.9°120.0°
C14C16C17C18177.6°180.0°
C14C16C17H1861.9°60.0°
C14C16C17H1957.2°60.0°
C16C14N3C4125.9°85.0°
C16C14C15N443.3°60.0°
H15C14C15O3103.4°120.0°
H15C14C16C1786.9°55.0°
H15C14C16H16152.5°175.0°
H15C14C16H1733.8°64.9°
H15C14N3C44.1°35.0°
H15C14C15N477.3°60.0°
O3C15N4C190.4°0.0°
O3C15N4H21179.6°180.0°
C17C16H16H17117.9°120.0°
C16C17C18H18120.5°119.9°
C16C17C18H19120.4°120.0°
C16C17H18H19118.6°120.0°
C16C17C18O4172.7°0.0°
C16C17C18O57.4°180.0°
H16C16C17C1856.9°60.0°
H16C16C17H18177.4°179.9°
H16C16C17H1963.5°60.1°
H17C16C17C1861.7°60.0°
H17C16C17H1858.8°59.9°
H17C16C17H19177.9°180.0°
C18C17H18H19118.6°120.1°
C17C18O4O5179.9°180.0°
C17C18O5H20179.9°180.0°
H18C17C18O466.8°119.9°
H18C17C18O5113.1°60.0°
H19C17C18O452.2°120.0°
H19C17C18O5127.9°60.0°
O4C18O5H200.0°0.1°
C19N4H21C15180.0°180.0°
N4C19C20C21125.2°120.0°
N4C19C20H22119.1°120.0°
N4C19C21H22117.1°120.0°
N4C19C20O620.0°0.0°
N4C19C21C2259.6°65.0°
N4C19C21H23179.7°55.0°
N4C19C21H2461.1°175.0°
N4C19C20N7159.4°180.0°
H21N4C19C2034.7°25.0°
H21N4C19C2190.1°95.0°
H21N4C19H22153.4°145.0°
C20C19C21H22115.8°119.9°
C19C20O6N7179.4°180.0°
C20C19C21C2267.5°174.9°
C20C19C21H2353.2°65.0°
C20C19C21H24171.8°55.0°
C19C20N7C26180.0°180.0°
C19C20N7H310.0°0.0°
C20C19N4C15145.3°155.0°
C21C19C20O6105.2°120.0°
C19C21C22H23120.7°120.0°
C19C21C22H24120.7°120.0°
C19C21H23H24117.8°120.0°
C19C21C22N574.7°95.0°
C19C21C22C23105.2°85.3°
C21C19C20N775.4°60.0°
C21C19N4C1589.9°85.0°
H22C19C20O6139.2°120.0°
H22C19C21C22176.7°55.0°
H22C19C21H2362.6°175.1°
H22C19C21H2456.0°65.0°
H22C19C20N740.3°60.0°
H22C19N4C1526.6°35.0°
O6C20N7C260.5°0.0°
O6C20N7H31179.4°180.0°
C22C21H23H24117.9°120.0°
C21C22N5C23180.0°179.7°
C21C22N5C24180.0°180.0°
C21C22N5H250.1°0.1°
C21C22C23N6180.0°180.0°
C21C22C23H260.0°0.0°
H23C21C22N5164.6°25.0°
H23C21C22C2315.4°154.7°
H24C21C22N546.0°145.0°
H24C21C22C23134.1°34.7°
C22N5C24H25180.0°180.0°
N5C22C23N60.0°0.3°
N5C22C23H26180.0°179.7°
C22N5C24N60.1°0.1°
C22N5C24H27179.9°179.9°
C23C22N5C240.1°0.3°
C23C22N5H25179.9°179.8°
C22C23N6H26180.0°180.0°
C22C23N6C240.0°0.2°
C22C23N6H28180.0°180.0°
N5C24N6C230.0°0.0°
N5C24N6H27180.0°179.9°
N5C24N6H28179.9°179.8°
H25N5C24N6179.9°179.9°
H25N5C24H270.1°0.0°
C23N6C24H28180.0°179.8°
C23N6C24H27179.9°179.9°
H26C23N6C24180.0°179.8°
H26C23N6H280.0°0.0°
H27C24N6H280.1°0.1°
O7C25C26H29120.1°120.0°
O7C25C26H30120.1°119.9°
O7C25H29H30119.5°119.9°
O7C25C26N7115.4°65.0°
O7C25C26C27122.2°55.0°
O7C25C26H335.3°175.0°
C26C25H29H30119.6°120.0°
C25C26N7C27120.4°120.0°
C25C26N7H33120.3°120.0°
C25C26N7H3164.6°95.0°
C26C25O7H32180.0°180.0°
C25C26C27H33117.0°120.0°
C25C26C27C28175.7°175.0°
C25C26C27H3463.8°65.0°
C25C26C27H3555.2°55.0°
C25C26N7C20115.4°85.0°
H29C25C26N74.7°175.0°
H29C25O7H3259.8°59.9°
H29C25C26C27117.6°65.0°
H29C25C26H33125.4°55.0°
H30C25C26N7124.4°54.9°
H30C25O7H3259.9°60.1°
H30C25C26C272.1°174.9°
H30C25C26H33114.8°65.0°
C26N7H31C20180.0°180.0°
N7C26C27H33119.8°120.0°
N7C26C27C2861.2°65.0°
N7C26C27H3459.3°55.0°
N7C26C27H35178.3°175.0°
H31N7C26C2755.9°25.0°
H31N7C26H33175.1°145.1°
C26C27C28H34120.5°120.0°
C26C27C28H35120.5°120.0°
C26C27H34H35118.4°120.0°
C26C27C28O941.0°0.1°
C26C27C28O8139.3°180.0°
C27C26N7C20124.1°155.0°
H33C26C27C2858.6°55.0°
H33C26C27H34179.2°175.0°
H33C26C27H3561.9°65.0°
H33C26N7C204.9°35.0°
C28C27H34H35118.4°120.0°
C27C28O9O8179.7°179.9°
C27C28O8H36179.7°179.9°
H34C27C28O9161.5°120.0°
H34C27C28O818.8°60.0°
H35C27C28O979.5°120.1°
H35C27C28O8100.1°60.0°
O9C28O8H360.0°0.0°

221716

PDB entries from 2024-06-26

PDB statisticsPDBj update infoContact PDBjnumon