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4FIS
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BU of 4fis by Molmil
THE MOLECULAR STRUCTURE OF WILD-TYPE AND A MUTANT FIS PROTEIN: RELATIONSHIP BETWEEN MUTATIONAL CHANGES AND RECOMBINATIONAL ENHANCER FUNCTION OR DNA BINDING
Descriptor: FACTOR FOR INVERSION STIMULATION (FIS)
Authors:Yuan, H.S, Finkel, S.E, Feng, J.-A, Johnson, R.C, Dickerson, R.E.
Deposit date:1991-08-12
Release date:1993-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.
Proc.Natl.Acad.Sci.USA, 88, 1991
3FIS
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BU of 3fis by Molmil
THE MOLECULAR STRUCTURE OF WILD-TYPE AND A MUTANT FIS PROTEIN: RELATIONSHIP BETWEEN MUTATIONAL CHANGES AND RECOMBINATIONAL ENHANCER FUNCTION OR DNA BINDING
Descriptor: FACTOR FOR INVERSION STIMULATION (FIS)
Authors:Yuan, H.S, Finkel, S.E, Feng, J-A, Johnson, R.C, Dickerson, R.E.
Deposit date:1991-08-12
Release date:1993-10-31
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.
Proc.Natl.Acad.Sci.USA, 88, 1991
1FIP
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BU of 1fip by Molmil
THE STRUCTURE OF FIS MUTANT PRO61ALA ILLUSTRATES THAT THE KINK WITHIN THE LONG ALPHA-HELIX IS NOT DUE TO THE PRESENCE OF THE PROLINE RESIDUE
Descriptor: FACTOR FOR INVERSION STIMULATION (FIS), UNKNOWN PEPTIDE, POSSIBLY PART OF THE UNOBSERVED RESIDUES IN ENTITY 1
Authors:Yuan, H.S, Wang, S.S, Yang, W.-Z, Finkel, S.E, Johnson, R.C.
Deposit date:1994-09-26
Release date:1995-02-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure of Fis mutant Pro61Ala illustrates that the kink within the long alpha-helix is not due to the presence of the proline residue.
J.Biol.Chem., 269, 1994
1OUP
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BU of 1oup by Molmil
Crystal structure of the periplasmic endonuclease Vvn complexed with octamer double stranded DNA
Descriptor: 5'-D(*GP*CP*GP*AP*TP*C)-3', 5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3', 5'-D(P*GP*C)-3', ...
Authors:Yuan, H.S, Li, C.-L.
Deposit date:2003-03-25
Release date:2003-08-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:DNA binding and cleavage by the periplasmic nuclease Vvn: a novel structure with a known active site.
Embo J., 22, 2003
1OUO
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BU of 1ouo by Molmil
Crystal structure of the periplasmic endonuclease Vvn
Descriptor: MAGNESIUM ION, Nuclease
Authors:Yuan, H.S, Li, C.L.
Deposit date:2003-03-25
Release date:2003-08-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:DNA binding and cleavage by the periplasmic nuclease Vvn: a novel structure with a known active site.
Embo J., 22, 2003
3S5B
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BU of 3s5b by Molmil
Crystal Structure of CED-3 Protease Suppressor-6 (CPS-6) from Caenorhabditis elegans
Descriptor: Endonuclease G, MAGNESIUM ION
Authors:Yuan, H.S, Lin, J.L.J.
Deposit date:2011-05-23
Release date:2012-01-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.796 Å)
Cite:Structural insights into apoptotic DNA degradation by CED-3 protease suppressor-6 (CPS-6) from Caenorhabditis elegans
J.Biol.Chem., 287, 2012
5ZF6
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BU of 5zf6 by Molmil
Crystal structure of the dimeric human PNPase
Descriptor: Polyribonucleotide nucleotidyltransferase 1, mitochondrial
Authors:Yuan, H.S, Golzarroshan, B.
Deposit date:2018-03-02
Release date:2018-08-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.796 Å)
Cite:Crystal structure of dimeric human PNPase reveals why disease-linked mutants suffer from low RNA import and degradation activities.
Nucleic Acids Res., 46, 2018
2AXC
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BU of 2axc by Molmil
Crystal structure of ColE7 translocation domain
Descriptor: Colicin E7, GLYCEROL, SULFATE ION
Authors:Cheng, Y.S, Shi, Z, Doudeva, L.G, Yang, W.Z, Chak, K.F, Yuan, H.S.
Deposit date:2005-09-04
Release date:2006-03-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High-resolution crystal structure of a truncated ColE7 translocation domain: implications for colicin transport across membranes
J.Mol.Biol., 356, 2006
5XGU
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BU of 5xgu by Molmil
Escherichia coli. RNase R
Descriptor: MAGNESIUM ION, Ribonuclease R
Authors:Chu, L.Y, Hsieh, T.J, Yuan, H.S.
Deposit date:2017-04-17
Release date:2017-10-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.846 Å)
Cite:Structural insights into RNA unwinding and degradation by RNase R.
Nucleic Acids Res., 45, 2017
4Y00
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BU of 4y00 by Molmil
Crystal Structure of Human TDP-43 RRM1 Domain with D169G Mutation in Complex with an Unmodified Single-stranded DNA
Descriptor: DNA (5'-D(P*TP*TP*GP*AP*GP*CP*GP*T)-3'), TAR DNA-binding protein 43
Authors:Chiang, C.H, Kuo, P.H, Yang, W.Z, Yuan, H.S.
Deposit date:2015-02-05
Release date:2016-02-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural analysis of disease-related TDP-43 D169G mutation: linking enhanced stability and caspase cleavage efficiency to protein accumulation
Sci Rep, 6, 2016
4Y0F
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BU of 4y0f by Molmil
Crystal Structure of Human TDP-43 RRM1 Domain in Complex with an Unmodified Single-stranded DNA
Descriptor: DNA (5'-D(*GP*TP*TP*GP*AP*GP*CP*GP*TP*T)-3'), TAR DNA-binding protein 43
Authors:Chiang, C.H, Kuo, P.H, Doudeva, L.G, Wang, Y.T, Yuan, H.S.
Deposit date:2015-02-06
Release date:2016-02-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.648 Å)
Cite:Structural analysis of disease-related TDP-43 D169G mutation: linking enhanced stability and caspase cleavage efficiency to protein accumulation
Sci Rep, 6, 2016
1M08
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BU of 1m08 by Molmil
Crystal structure of the unbound nuclease domain of ColE7
Descriptor: Colicin E7, PHOSPHATE ION, ZINC ION
Authors:Cheng, Y.S, Hsia, K.C, Doudeva, L.G, Chak, K.F, Yuan, H.S.
Deposit date:2002-06-12
Release date:2002-12-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Crystal Structure of the Nuclease Domain of Colicin E7 Suggests a Mechanism for Binding to Double-stranded DNA by the H-N-H Endonucleases
J.mol.biol., 324, 2002
6IID
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BU of 6iid by Molmil
Human EXOG-H140A in complex with RNA-DNA chimeric duplex
Descriptor: DNA (5'-D(*CP*GP*TP*GP*AP*CP*AP*TP*CP*CP*CP*G)-3'), DNA/RNA (5'-R(P*CP*GP*GP*GP*A)-D(P*T)-R(P*G)-D(P*T)-R(P*CP*AP*CP*G)-3'), MAGNESIUM ION, ...
Authors:Wu, C.C, Lin, J.L.J, Yuan, H.S.
Deposit date:2018-10-04
Release date:2019-04-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.986 Å)
Cite:A unique exonuclease ExoG cleaves between RNA and DNA in mitochondrial DNA replication.
Nucleic Acids Res., 47, 2019
3KRN
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BU of 3krn by Molmil
Crystal Structure of C. elegans cell-death-related nuclease 5(CRN-5)
Descriptor: Protein C14A4.5, confirmed by transcript evidence
Authors:Yang, C.-C, Wang, Y.-T, Hsiao, Y.-Y, Doudeva, L.G, Chow, S.Y, Yuan, H.S.
Deposit date:2009-11-19
Release date:2010-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.918 Å)
Cite:Structural and biochemical characterization of CRN-5 and Rrp46: an exosome component participating in apoptotic DNA degradation
Rna, 16, 2010
4QN0
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BU of 4qn0 by Molmil
Crystal structure of the CPS-6 mutant Q130K
Descriptor: Endonuclease G, mitochondrial, MAGNESIUM ION
Authors:Lin, J.L.J, Yuan, H.S.
Deposit date:2014-06-17
Release date:2015-06-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Oxidative Stress Impairs Cell Death by Repressing the Nuclease Activity of Mitochondrial Endonuclease G
Cell Rep, 16, 2016
1UNK
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BU of 1unk by Molmil
STRUCTURE OF COLICIN E7 IMMUNITY PROTEIN
Descriptor: COLICIN E7
Authors:Ko, T.-P, Hsieh, S.-Y, Ku, W.-Y, Tseng, M.-Y, Chak, K.-F, Yuan, H.S.
Deposit date:1996-06-21
Release date:1998-01-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A novel role of ImmE7 in the autoregulatory expression of the ColE7 operon and identification of possible RNase active sites in the crystal structure of dimeric ImmE7.
EMBO J., 16, 1997
1MVE
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BU of 1mve by Molmil
Crystal structure of a natural circularly-permutated jellyroll protein: 1,3-1,4-beta-D-glucanase from Fibrobacter succinogenes
Descriptor: CALCIUM ION, Truncated 1,3-1,4-beta-D-glucanase
Authors:Tsai, L.-C, Shyur, L.-F, Lee, S.-H, Lin, S.-S, Yuan, H.S.
Deposit date:2002-09-25
Release date:2003-07-15
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure of a Natural Circularly Permuted Jellyroll Protein: 1,3-1,4-beta-D-Glucanase from Fibrobacter succinogenes.
J.Mol.Biol., 330, 2003
1MZ8
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BU of 1mz8 by Molmil
CRYSTAL STRUCTURES OF THE NUCLEASE DOMAIN OF COLE7/IM7 IN COMPLEX WITH A PHOSPHATE ION AND A ZINC ION
Descriptor: Colicin E7, Colicin E7 immunity protein, PHOSPHATE ION, ...
Authors:Sui, M.J, Tsai, L.C, Hsia, K.C, Doudeva, L.G, Ku, W.Y, Han, G.W, Yuan, H.S.
Deposit date:2002-10-07
Release date:2002-12-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Metal ions and phosphate binding in the H-N-H motif: crystal structures of the nuclease domain of ColE7/Im7 in complex with a phosphate ion and different divalent metal ions
PROTEIN SCI., 11, 2002
1PT3
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BU of 1pt3 by Molmil
Crystal structures of nuclease-ColE7 complexed with octamer DNA
Descriptor: 5'-GCGATCGC-3', Colicin E7
Authors:Hsia, K.C, Chak, K.F, Cheng, Y.S, Ku, W.Y, Yuan, H.S.
Deposit date:2003-06-22
Release date:2004-03-30
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:DNA binding and degradation by the HNH protein ColE7.
STRUCTURE, 12, 2004
4P5U
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BU of 4p5u by Molmil
Crystal structure of TatD
Descriptor: Tat-linked quality control protein TatD
Authors:Chen, Y, Li, C.-L, Hsiao, Y.-Y, Duh, Y, Yuan, H.S.
Deposit date:2014-03-20
Release date:2014-08-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of TatD exonuclease in DNA repair.
Nucleic Acids Res., 42, 2014
3HKM
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BU of 3hkm by Molmil
Crystal Structure of rice(Oryza sativa) Rrp46
Descriptor: Os03g0854200 protein
Authors:Yang, C.-C, Wang, Y.-T, Hsiao, Y.-Y, Doudeva, L.G, Yuan, H.S.
Deposit date:2009-05-25
Release date:2010-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9845 Å)
Cite:Structural and biochemical characterization of CRN-5 and Rrp46: an exosome component participating in apoptotic DNA degradation
Rna, 16, 2010
4PE8
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BU of 4pe8 by Molmil
Crystal structure of TatD in complex with trinucleotide DNA
Descriptor: DNA (5'-D(*GP*CP*T)-3'), Tat-linked quality control protein TatD
Authors:Chen, Y, Li, C.-L, Hsiao, Y.-Y, Duh, Y, Yuan, H.S.
Deposit date:2014-04-23
Release date:2014-08-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.894 Å)
Cite:Structure and function of TatD exonuclease in DNA repair.
Nucleic Acids Res., 42, 2014
7CEI
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BU of 7cei by Molmil
THE ENDONUCLEASE DOMAIN OF COLICIN E7 IN COMPLEX WITH ITS INHIBITOR IM7 PROTEIN
Descriptor: PROTEIN (COLICIN E7 IMMUNITY PROTEIN), ZINC ION
Authors:Ko, T.P, Liao, C.C, Ku, W.Y, Chak, K.F, Yuan, H.S.
Deposit date:1998-09-17
Release date:1999-09-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein.
Structure Fold.Des., 7, 1999
3CDJ
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BU of 3cdj by Molmil
Crystal structure of the E. coli KH/S1 domain truncated PNPase
Descriptor: Polynucleotide phosphorylase
Authors:Shi, Z, Yang, W.Z, Lin-Chao, S, Chak, K.F, Yuan, H.S.
Deposit date:2008-02-27
Release date:2008-12-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation.
Rna, 14, 2008
3CDI
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BU of 3cdi by Molmil
Crystal structure of E. coli PNPase
Descriptor: Polynucleotide phosphorylase
Authors:Shi, Z, Yang, W.Z, Lin-Chao, S, Chak, K.F, Yuan, H.S.
Deposit date:2008-02-27
Release date:2008-12-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation.
Rna, 14, 2008

 

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