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3VQV
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CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PYRROLYSYL-TRNA SYNTHETASE IN COMPLEX WITH AMPPNP (RE-REFINED)
Descriptor:Pyrrolysine--tRNA ligase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, MAGNESIUM ION
Authors:Yanagisawa, T., Sumida, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2012-04-01
Release date:2013-01-02
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site
Acta Crystallogr.,Sect.D, 69, 2013
2EL7
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CRYSTAL STRUCTURE OF TRYPTOPHANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS
Descriptor:Tryptophanyl-tRNA synthetase, PHOSPHATE ION
Authors:Yanagisawa, T., Sumida, T., Ishii, R., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-26
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of Tryptophanyl-tRNA synthetase from Thermus thermophilus
To be published
3VQW
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CRYSTAL STRUCTURE OF THE SEMET SUBSTITUTED CATALYTIC DOMAIN OF PYRROLYSYL-TRNA SYNTHETASE
Descriptor:Pyrrolysine--tRNA ligase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, MAGNESIUM ION
Authors:Yanagisawa, T., Sumida, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2012-04-01
Release date:2013-01-02
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site
Acta Crystallogr.,Sect.D, 69, 2013
3VQX
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CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PYRROLYSYL-TRNA SYNTHETASE IN TRICLINIC CRYSTAL FORM
Descriptor:Pyrrolysine--tRNA ligase, ADENOSINE MONOPHOSPHATE, PHOSPHATE ION, ...
Authors:Yanagisawa, T., Sumida, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2012-04-02
Release date:2013-01-02
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site
Acta Crystallogr.,Sect.D, 69, 2013
3VQY
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CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PYRROLYSYL-TRNA SYNTHETASE IN COMPLEX WITH BOCLYS AND AMPPNP (FORM 2)
Descriptor:Pyrrolysine--tRNA ligase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, N~6~-(tert-butoxycarbonyl)-L-lysine, ...
Authors:Yanagisawa, T., Sumida, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2012-04-02
Release date:2013-01-02
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:A novel crystal form of pyrrolysyl-tRNA synthetase reveals the pre- and post-aminoacyl-tRNA synthesis conformational states of the adenylate and aminoacyl moieties and an asparagine residue in the catalytic site
Acta Crystallogr.,Sect.D, 69, 2013
3WNB
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CRYSTAL STRUCTURE OF EF-PYL IN COMPLEX WITH GMPPNP
Descriptor:Protein translation elongation factor 1A, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION
Authors:Yanagisawa, T., Ishii, R., Fukunaga, R., Sengoku, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of EF-Pyl, an EF-Tu/SelB/aIF2gamma-like translation factor from Methanosarcina mazei, in the GTP-bound, GDP-bound, and apo forms
To be Published
3WNC
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CRYSTAL STRUCTURE OF EF-PYL IN COMPLEX WITH GDP
Descriptor:Protein translation elongation factor 1A, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Yanagisawa, T., Ishii, R., Fukunaga, R., Sengoku, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of EF-Pyl, an EF-Tu/SelB/aIF2gamma-like translation factor from Methanosarcina mazei, in the GTP-bound, GDP-bound, and apo forms
To be Published
3WND
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CRYSTAL STRUCTURE OF EF-PYL
Descriptor:Protein translation elongation factor 1A, CITRIC ACID
Authors:Yanagisawa, T., Ishii, R., Fukunaga, R., Sengoku, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:crystal structures of EF-Pyl, an EF-Tu/SelB/aIF2gamma-like translation factor from Methanosarcina mazei, in the GTP-bound, GDP-bound, and apo forms
To be Published
2E3C
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CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PYRROLYSYL-TRNA SYNTHETASE
Descriptor:Pyrrolysyl-tRNA synthetase
Authors:Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-11-22
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystallographic Studies on Multiple Conformational States of Active-site Loops in Pyrrolysyl-tRNA Synthetase
J.Mol.Biol., 378, 2008
2ZCE
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CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PYRROLYSYL-TRNA SYNTHETASE IN COMPLEX WITH PYRROLYSINE AND AN ATP ANALOGUE
Descriptor:Pyrrolysyl-tRNA synthetase, MAGNESIUM ION, PYRROLYSINE, ...
Authors:Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-11-08
Release date:2008-04-22
Last modified:2014-02-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic Studies on Multiple Conformational States of Active-site Loops in Pyrrolysyl-tRNA Synthetase
J.Mol.Biol., 378, 2008
2ZIN
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CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PYRROLYSYL-TRNA SYNTHETASE IN COMPLEX WITH BOCLYS AND AN ATP ANALOGUE
Descriptor:Pyrrolysyl-tRNA synthetase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-02-19
Release date:2008-12-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Multistep Engineering of Pyrrolysyl-tRNA Synthetase to Genetically Encode N(varepsilon)-(o-Azidobenzyloxycarbonyl) lysine for Site-Specific Protein Modification
Chem.Biol., 15, 2008
2ZIO
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CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PYRROLYSYL-TRNA SYNTHETASE IN COMPLEX WITH ALOCLYS-AMP AND PNP
Descriptor:Pyrrolysyl-tRNA synthetase, IMIDODIPHOSPHORIC ACID, 5'-O-[(S)-({(2S)-2-amino-6-[(propoxycarbonyl)amino]hexanoyl}oxy)(hydroxy)phosphoryl]adenosine
Authors:Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-02-19
Release date:2008-12-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Multistep Engineering of Pyrrolysyl-tRNA Synthetase to Genetically Encode N(varepsilon)-(o-Azidobenzyloxycarbonyl) lysine for Site-Specific Protein Modification
Chem.Biol., 15, 2008
2EL9
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CRYSTAL STRUCTURE OF E.COLI HISTIDYL-TRNA SYNTHETASE COMPLEXED WITH A HISTIDYL-ADENYLATE ANALOGUE
Descriptor:Histidyl-tRNA synthetase, 5'-O-[(L-HISTIDYLAMINO)SULFONYL]ADENOSINE
Authors:Yanagisawa, T., Si, S.Y., Matsuno, M., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-27
Release date:2008-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of E.coli Histidyl-tRNA synthetase complexed with a histidyl-adenylate analogue
To be published
2YVL
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CRYSTAL STRUCTURE OF TRNA (M1A58) METHYLTRANSFERASE TRMI FROM AQUIFEX AEOLICUS
Descriptor:Hypothetical protein, S-ADENOSYLMETHIONINE
Authors:Yanagisawa, T., Ishii, R., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-13
Release date:2008-04-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of tRNA (m1A58) methyltransferase TrmI from Aquifex aeolicus
To be Published
6AAC
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CRYSTAL STRUCTURE OF METHANOSARCINA MAZEI PYLRS(Y306A/Y384F) COMPLEXED WITH MAZZLYS
Descriptor:Pyrrolysine--tRNA ligase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yanagisawa, T., Kuratani, M., Yokoyama, S.
Deposit date:2018-07-18
Release date:2019-04-17
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (1.479 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AAD
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CRYSTAL STRUCTURE OF METHANOSARCINA MAZEI PYLRS(Y306A/Y384F) COMPLEXED WITH MTMDZLYS
Descriptor:Pyrrolysine--tRNA ligase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yanagisawa, T., Kuratani, M., Yokoyama, S.
Deposit date:2018-07-18
Release date:2019-04-17
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (1.444 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AAN
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CRYSTAL STRUCTURE OF METHANOSARCINA MAZEI PYLRS(Y306A/Y384F) COMPLEXED WITH METZLYS
Descriptor:Pyrrolysine--tRNA ligase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yanagisawa, T., Kuratani, M., Yokoyama, S.
Deposit date:2018-07-18
Release date:2019-04-17
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AAO
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CRYSTAL STRUCTURE OF METHANOSARCINA MAZEI PYLRS(Y306A/Y384F) COMPLEXED WITH TCO*LYS
Descriptor:Pyrrolysine--tRNA ligase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yanagisawa, T., Kuratani, M., Yokoyama, S.
Deposit date:2018-07-18
Release date:2019-04-17
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (1.403 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AAP
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CRYSTAL STRUCTURE OF METHANOSARCINA MAZEI PYLRS(Y306A/Y384F) COMPLEXED WITH ZAESECYS
Descriptor:Pyrrolysine--tRNA ligase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yanagisawa, T., Kuratani, M., Yokoyama, S.
Deposit date:2018-07-18
Release date:2019-04-17
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AAQ
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CRYSTAL STRUCTURE OF METHANOSARCINA MAZEI PYLRS(Y306A/Y384F) COMPLEXED WITH BCNLYS
Descriptor:Pyrrolysine--tRNA ligase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yanagisawa, T., Kuratani, M., Yokoyama, S.
Deposit date:2018-07-18
Release date:2019-04-17
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (1.551 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AAZ
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CRYSTAL STRUCTURE OF METHANOSARCINA MAZEI PYLRS(Y306A/Y384F) COMPLEXED WITH PNO2ZLYS
Descriptor:Pyrrolysine--tRNA ligase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yanagisawa, T., Kuratani, M., Yokoyama, S.
Deposit date:2018-07-19
Release date:2019-04-17
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (1.842 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AB0
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CRYSTAL STRUCTURE OF METHANOSARCINA MAZEI PYLRS(Y306A/Y384F) COMPLEXED WITH PAMPYLYS
Descriptor:Pyrrolysine--tRNA ligase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yanagisawa, T., Kuratani, M., Yokoyama, S.
Deposit date:2018-07-19
Release date:2019-04-17
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (1.441 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AB1
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CRYSTAL STRUCTURE OF METHANOSARCINA MAZEI PYLRS(Y306A/Y384F) COMPLEXED WITH OAZZLYS
Descriptor:Pyrrolysine--tRNA ligase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yanagisawa, T., Kuratani, M., Yokoyama, S.
Deposit date:2018-07-19
Release date:2019-04-17
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (1.381 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AB2
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CRYSTAL STRUCTURE OF METHANOSARCINA MAZEI PYLRS(Y306A/Y384F) COMPLEXED WITH OCLZLYS
Descriptor:Pyrrolysine--tRNA ligase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yanagisawa, T., Kuratani, M., Yokoyama, S.
Deposit date:2018-07-19
Release date:2019-04-17
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AB8
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CRYSTAL STRUCTURE OF METHANOSARCINA MAZEI PYLRS(Y306A/Y384F) COMPLEXED WITH ZLYS
Descriptor:Pyrrolysine--tRNA ligase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Yanagisawa, T., Kuratani, M., Yokoyama, S.
Deposit date:2018-07-20
Release date:2019-04-17
Last modified:2019-08-07
Method:X-RAY DIFFRACTION (1.753 Å)
Cite:Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
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